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Genotype-Phenotype Discrepancies in Family Members With a Novel Glucokinase Mutation: Insights Into GCK-MODY and Its Interplay With Insulin Resistance 一种新的葡萄糖激酶突变家族成员的基因型-表型差异:对GCK-MODY及其与胰岛素抵抗的相互作用的见解
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-25 DOI: 10.2337/db24-1036
Shuhui Ji, Hua Shu, Hongqiang Zhao, Hongwei Jiang, Yuanyuan Ye, Xuan Liu, Shanshan Chen, Ying Yang, Wenli Feng, Jingting Qiao, Jinyang Zhen, Xiong Yang, Ziyue Zhang, Yu Fan, Yadi Huang, Qing He, Minxian Wang, Kunling Wang, Ming Liu
Heterozygous inactivating mutations in the glucokinase (GCK) gene cause maturity-onset diabetes of the young (GCK-MODY). We identified a novel variant of uncertain significance in the GCK gene (c.77A>T, p.Q26L) in two family members exhibiting contrasting diabetic phenotypes. To explore the diabetogenic potential of the GCK-Q26L mutation and investigate the mono- and polygenetic factors contributing to different phenotypes, whole-exome sequencing and polygenic risk score (PRS) assessments were conducted on three family members. We found that the proband inherited the GCK-Q26L mutation from her father (who had mild, stable hyperglycemia) but exhibited more severe diabetic symptoms, including polydipsia, polyuria, weight loss, ketosis, and significant dyslipidemia. Genetic analysis linked the proband’s severe phenotypes to her high PRS for insulin resistance (IR) and type 2 diabetes. A global knock-in mouse model expressing GCK-Q26L presented mild hyperglycemia, impaired glucose tolerance, reduced serum insulin, and impaired glucose-stimulated insulin secretion. Both dorzagliatin and liraglutide improved glucose tolerance and insulin secretion in mutant mice. This study demonstrates that GCK-Q26L is a pathogenic GCK-MODY mutation, and its associated phenotypes are influenced by PRS for IR and type 2 diabetes. Article Highlights This study was undertaken to investigate the diabetogenic potential of a novel GCK variant, c.77A>T, p.Q26L, found in two family members with marked differences in diabetic phenotypes. We aimed to understand the role of GCK-Q26L in glucose metabolism and to explore whether genetic backgrounds, including polygenic risk score for insulin resistance and type 2 diabetes, contribute to diabetes manifestations. We found that GCK-Q26L is a pathogenic mutation leading to GCK-MODY, with severity modulated by polygenic risk score for insulin resistance and type 2 diabetes. These findings not only expand the list of GCK-MODY causing mutations but also highlight the importance of polygenic backgrounds in the clinical presentation and management of monogenic diabetes.
葡萄糖激酶(GCK)基因的杂合失活突变导致年轻人的成熟型糖尿病(GCK- mody)。我们在两个表现出截然不同的糖尿病表型的家族成员中发现了GCK基因(c.77A>;T, p.Q26L)的一个不确定意义的新变体。为了探索GCK-Q26L突变的致糖尿病潜力,研究导致不同表型的单基因和多基因因素,我们对3名家族成员进行了全外显子组测序和多基因风险评分(PRS)评估。我们发现先证从她的父亲(患有轻度、稳定的高血糖)遗传了GCK-Q26L突变,但表现出更严重的糖尿病症状,包括多饮、多尿、体重减轻、酮症和明显的血脂异常。遗传分析将先证者的严重表型与她的胰岛素抵抗(IR)和2型糖尿病的高PRS联系起来。表达GCK-Q26L的敲入小鼠模型出现轻度高血糖、糖耐量受损、血清胰岛素降低和葡萄糖刺激胰岛素分泌受损。dorzagliatin和利拉鲁肽均能改善突变小鼠的葡萄糖耐量和胰岛素分泌。本研究表明GCK-Q26L是一种致病性GCK-MODY突变,其相关表型受IR和2型糖尿病PRS的影响。本研究旨在探讨一种新型GCK变异c.77A>;T, p.Q26L,在糖尿病表型有显著差异的两个家族成员中发现。我们旨在了解GCK-Q26L在葡萄糖代谢中的作用,并探讨遗传背景(包括胰岛素抵抗和2型糖尿病的多基因风险评分)是否与糖尿病表现有关。我们发现GCK-Q26L是导致GCK-MODY的致病突变,其严重程度由胰岛素抵抗和2型糖尿病的多基因风险评分调节。这些发现不仅扩大了GCK-MODY引起突变的列表,而且强调了多基因背景在单基因糖尿病的临床表现和管理中的重要性。
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引用次数: 0
Combined Weight Loss and Exercise Training Alters Skeletal Muscle Subcellular Lipid Localization and Intermuscular Adipose Tissue Cellular Composition 联合减肥和运动训练改变骨骼肌亚细胞脂质定位和肌间脂肪组织细胞组成
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-22 DOI: 10.2337/db25-0492
Karin Zemski Berry, Amanda Garfield, Katie L. Whytock, Emily Macias, Simona Zarini, Purevsuren Jambal, Tyler Stepaniak, Sophia Bowen, Leigh Perreault, Chris Johnson, Darcy Kahn, Anna Kerege, Ian J. Tamburini, Christy M. Nguyen, Carlos H. Viesi, Marcus Seldin, Yifei Sun, Martin Walsh, Lauren M. Sparks, Bryan C. Bergman
Subcellular lipid accumulation and intermuscular adipose tissue (IMAT) accumulation are associated with insulin resistance, but the impact of combined weight loss and exercise training on localization of lipids and IMAT cellular composition is not known. Twenty-one adults with obesity (18 female and 3 male; 46 ± 2 years; 35.0 ± 0.9 kg/m2) completed a 3-month supervised weight loss and exercise training intervention. Insulin sensitivity was measured using a hyperinsulinemic-euglycemic clamp, and basal and insulin-stimulated vastus lateralis biopsies were collected pre- and postintervention. After the intervention, body weight and body fat decreased (11 ± 1% and 9 ± 1%, respectively), while VO2 peak and insulin sensitivity increased (14 ± 3% and 68 ± 14%, respectively). Lipidomics revealed reduced sarcolemmal and nuclear triglycerides, with unchanged whole-muscle triglycerides. Whole-muscle diacylglycerols increased because of increased nuclear 1,2-diacylglycerols without PKCε, PKCθ, or PKCδ activation. Whole-muscle sphingolipid levels increased because of cytosolic accumulation. Single-nuclei RNA sequencing showed altered IMAT cellular composition, including increased fibro-adipogenic progenitors, vascular cells, and macrophages, and decreased preadipocytes. Bulk muscle RNA sequencing indicated upregulation of genes related to muscle remodeling and cellular respiration, and there were changes in the relationship between nuclear diacylglycerols and gene expression postintervention. These findings dissociate improvements in insulin sensitivity from total muscle diacylglycerol and sphingolipid levels and highlight roles for subcellular lipid redistribution and IMAT remodeling in insulin sensitization. Article Highlights Evaluation of subcellular fractionated muscle revealed decreases in sarcolemmal and nuclear triglycerides and increases in nuclear diacylglycerols and cytosolic sphingolipids postintervention. Weight loss revealed alteration in the cellular composition of intermuscular adipose tissue and upregulation of genes related to muscle remodeling and cellular respiration. These findings dissociate improvements in insulin sensitivity from total muscle 1,2-diacylglycerol and sphingolipid levels and highlight roles of intermuscular adipose tissue remodeling for enhanced insulin sensitivity.
亚细胞脂质积累和肌间脂肪组织(IMAT)积累与胰岛素抵抗有关,但联合减肥和运动训练对脂质定位和IMAT细胞组成的影响尚不清楚。21名肥胖成人(女性18名,男性3名;46±2岁;35.0±0.9 kg/m2)完成了为期3个月的监督减肥和运动训练干预。采用高胰岛素-正血糖钳测量胰岛素敏感性,并在干预前后收集基础和胰岛素刺激的股外侧肌活检。干预后,体重和体脂下降(分别为11±1%和9±1%),VO2峰值和胰岛素敏感性升高(分别为14±3%和68±14%)。脂质组学显示肌上皮和核甘油三酯减少,全肌肉甘油三酯不变。在没有PKCε、PKCθ或PKCδ活化的情况下,核1,2-二酰基甘油增加导致全肌二酰基甘油增加。全肌鞘脂水平因胞浆积累而增加。单核RNA测序显示IMAT细胞组成改变,包括纤维脂肪祖细胞、血管细胞和巨噬细胞增加,前脂肪细胞减少。大肌肉RNA测序显示,与肌肉重塑和细胞呼吸相关的基因上调,干预后核二酰基甘油与基因表达的关系发生变化。这些发现将胰岛素敏感性的改善与总肌二酰基甘油和鞘脂水平分离,并强调了亚细胞脂质再分配和IMAT重塑在胰岛素敏感化中的作用。亚细胞分离肌肉的评估显示,干预后肌层和核甘油三酯减少,核二酰基甘油和胞浆鞘脂增加。体重减轻揭示了肌间脂肪组织的细胞组成的改变以及与肌肉重塑和细胞呼吸相关的基因的上调。这些发现将胰岛素敏感性的改善与总肌肉1,2-二酰基甘油和鞘脂水平分离开来,并强调了肌间脂肪组织重塑对胰岛素敏感性增强的作用。
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引用次数: 0
Systems Biology and Functional Assessments of Human iPSC-Cardiomyocyte Models of Insulin Resistance Capture Key Hallmarks of Diabetic Cardiomyopathy 人类ipsc -胰岛素抵抗心肌细胞模型的系统生物学和功能评估捕捉糖尿病心肌病的关键特征
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-16 DOI: 10.2337/db25-0204
Ryan D. Carter, Ujang Purnama, Marcos Castro-Guarda, Claudia N. Montes-Aparicio, Anandhakumar Chandran, Richard Mbasu, Maxwell Ruby, Charlotte Daly, Kirsti Brisk, Helen C. Christian, Jack J.J.J. Miller, Francesca M. Buffa, Lisa C. Heather, Carolyn A. Carr
Human-centric models of diabetic cardiomyopathy (DbCM) are needed to provide mechanistic insights and translationally relevant therapeutic targets for patients with diabetes. A systems biology approach using insulin resistant (IR) two-dimensional (2D) human induced pluripotent stem cell–derived cardiomyocytes (hiPSC-CMs) and three-dimensional (3D) engineered heart tissue (EHT) provides a comprehensive evaluation of dysregulated pathways and determines suitability as a translationally relevant model of DbCM. Culturing hiPSC-CMs in 2D or 3D EHT in IR media induced insulin resistance and activated multiple pathways implicated in DbCM, including metabolic remodeling, mitochondrial dysfunction, extracellular matrix remodeling, endoplasmic reticulum stress, and blunted response to hypoxia, as assessed using transcriptomics and proteomics. Metabolic flux measurements in both IR 2D and 3D platforms demonstrated increased fatty acid oxidation and lipid storage, whereas glucose metabolism was downregulated. Modeling DbCM in 3D EHTs conferred additional metabolic and functional advantages over the 2D hiPSC-CM, demonstrating impaired contractility and muscle architecture. Metformin treatment improved both contractility and metabolic function, demonstrating the utility of IR EHT for drug assessment. In conclusion, IR 2D and 3D hiPSC-CM models effectively capture key DbCM features. However, 3D EHT provides additional insights into physiological and structural modifications. This highlights the potential of IR EHT for both mechanistic studies and drug screening in DbCM. Article Highlights Human-centric cardiac models are needed that recapitulate mechanistic and functional changes in the type 2 diabetic myocardium for understanding disease pathogenesis and developing new therapies. Using human induced pluripotent stem cell–derived cardiomyocytes (hiPSC-CM) in 2D and 3D as engineered heart tissue (EHT), we aimed to model diabetic cardiomyopathy in cellulo. Taking an unbiased systems biology approach, our cellular models recapitulated the dysregulated pathways and functional derangement of diabetic cardiomyopathy. Three-dimensional EHT models showed contractile dysfunction akin to that seen in patients, with mechanistic and functional changes reversed with metformin. It is possible to generate translationally relevant hiPSC-CM models that mimic diabetic cardiomyopathy.
以人为中心的糖尿病性心肌病(DbCM)模型需要为糖尿病患者提供机制见解和翻译相关的治疗靶点。利用胰岛素抵抗(IR)二维(2D)人诱导多能干细胞来源的心肌细胞(hiPSC-CMs)和三维(3D)工程化心脏组织(EHT)的系统生物学方法提供了对失调通路的全面评估,并确定了作为DbCM翻译相关模型的适用性。利用转录组学和蛋白质组学评估,在IR介质中2D或3D EHT中培养hiPSC-CMs可诱导胰岛素抵抗,并激活与DbCM相关的多种途径,包括代谢重塑、线粒体功能障碍、细胞外基质重塑、内质网应激和对缺氧的迟钝反应。在IR 2D和3D平台上的代谢通量测量显示脂肪酸氧化和脂质储存增加,而葡萄糖代谢下调。在3D EHTs中建模DbCM比2D hiPSC-CM具有额外的代谢和功能优势,显示收缩性和肌肉结构受损。二甲双胍治疗改善了收缩力和代谢功能,证明了IR EHT在药物评估中的实用性。总之,红外2D和3D hiPSC-CM模型有效地捕获了DbCM的关键特征。然而,3D EHT提供了对生理和结构变化的额外见解。这突出了红外EHT在DbCM的机制研究和药物筛选方面的潜力。为了了解2型糖尿病的发病机制和开发新的治疗方法,需要以人类为中心的心脏模型来概括2型糖尿病心肌的机制和功能变化。利用人诱导多能干细胞来源的心肌细胞(hiPSC-CM)作为工程化心脏组织(EHT),在细胞中建立糖尿病心肌病模型。采用不偏不倚的系统生物学方法,我们的细胞模型概括了糖尿病心肌病的失调途径和功能紊乱。三维EHT模型显示与患者相似的收缩功能障碍,二甲双胍逆转了机制和功能变化。有可能产生翻译相关的hiPSC-CM模型,模拟糖尿病性心肌病。
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引用次数: 0
Proinflammatory Cytokines Mediate Pancreatic β-Cell–Specific Alterations to Golgi Integrity via iNOS-Dependent Mitochondrial Inhibition 促炎细胞因子通过inos依赖性线粒体抑制介导胰腺β细胞特异性高尔基体完整性改变
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-04 DOI: 10.2337/db25-0132
Sandra E. Blom, Palin R. Narsian, Riley M. Behan-Bush, James A. Ankrum, Ling Yang, Samuel B. Stephens
Type 1 diabetes (T1D) is caused by the selective autoimmune ablation of pancreatic β-cells. Emerging evidence reveals β-cell secretory dysfunction arises early in T1D development and may contribute to diseases etiology; however, the underlying mechanisms are not well understood. Our data reveal that proinflammatory cytokines elicit a complex change in the β-cell’s Golgi structure and function. The structural modifications include Golgi compaction and loss of the interconnecting ribbon resulting in Golgi fragmentation. We further show that Golgi structural alterations coincide with persistent altered cell surface glycoprotein composition. Our data demonstrate that inducible nitric oxide synthase (iNOS)–generated nitric oxide (NO) is necessary and sufficient for β-cell Golgi restructuring. Moreover, the unique sensitivity of the β-cell to NO-dependent mitochondrial inhibition results in β-cell–specific Golgi alterations that are absent in other cell types, including α-cells. Examination of human pancreas samples from autoantibody-positive and T1D donors with residual β-cells further revealed alterations in β-cell, but not α-cell, Golgi structure that correlate with T1D progression. Collectively, our studies provide critical clues as to how β-cell secretory functions are specifically impacted by cytokines and NO that may contribute to the development of β-cell autoantigens relevant to T1D. Article Highlights Proinflammatory cytokines drive disruptions in Golgi structure and function in human, mouse, and rat β-cells. Golgi alterations result from inducible nitric oxide synthase (iNOS)– and nitric oxide (NO)–dependent inhibition of mitochondrial metabolism. α-Cell Golgi structure is insensitive to cytokine- and NO-mediated metabolic inhibition. Analysis of human donor tissue shows early Golgi alteration in β-cells from autoantibody-positive donors, which persists in residual β-cells from T1D donors.
1型糖尿病(T1D)是由胰腺β细胞的选择性自身免疫消融引起的。越来越多的证据表明β细胞分泌功能障碍在T1D发展早期出现,并可能导致疾病病因;然而,其潜在机制尚不清楚。我们的数据显示,促炎细胞因子引起β细胞高尔基结构和功能的复杂变化。结构变化包括高尔基压实和互连带的损失,导致高尔基断裂。我们进一步表明高尔基结构改变与持续改变的细胞表面糖蛋白组成一致。我们的数据表明,诱导型一氧化氮合酶(iNOS)产生的一氧化氮(NO)对于β细胞高尔基重组是必要和充分的。此外,β-细胞对no依赖性线粒体抑制的独特敏感性导致β-细胞特异性高尔基改变,这在其他细胞类型(包括α-细胞)中是不存在的。对自身抗体阳性和T1D供者胰腺样本中残留β细胞的检查进一步揭示了与T1D进展相关的β细胞而非α细胞高尔基结构的改变。总的来说,我们的研究为β细胞分泌功能如何受到细胞因子和NO的特异性影响提供了重要线索,这些细胞因子和NO可能有助于与T1D相关的β细胞自身抗原的形成。促炎细胞因子在人、小鼠和大鼠β细胞中驱动高尔基结构和功能的破坏。高尔基改变是由诱导型一氧化氮合酶(iNOS)和一氧化氮(NO)依赖性线粒体代谢抑制引起的。α-细胞高尔基结构对细胞因子和no介导的代谢抑制不敏感。对人类供体组织的分析显示,来自自身抗体阳性供体的β-细胞存在早期高尔基改变,这种改变在T1D供体的残余β-细胞中持续存在。
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引用次数: 0
Application of Dental Pulp Stem Cell–Derived Intracellular Vesicles for Diabetic Wound Healing 牙髓干细胞源性细胞内囊泡在糖尿病创面愈合中的应用
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-04 DOI: 10.2337/db24-0686
Pengcheng Pang, Yonghao Liu, Haicheng Song, Zhifei Ye, Heng Zhou, Rui Zhang, Tushar Kumeria, Wenting She, Chun Xu, Peter L. Mei, Yan He, Qingsong Ye
Diabetic wounds represent a significant clinical and economic burden, affecting both patients and health care systems. While current therapeutic approaches, such as negative pressure wound therapy, offer benefits, their limitations necessitate alternative strategies. Newly discovered dental pulp stem cell–derived intracellular vesicles have emerged as a promising candidate in regenerative medicine due to their therapeutic potential. In vitro assessments using HUVECs, HaCaTs, and RAW264.7 cells revealed that intracellular vesicles enhance cell migration, angiogenesis, and proliferation while suppressing the cGAS-STING pathway. Additionally, intracellular vesicles promoted M2 macrophage polarization and maintained mitochondrial function. In a diabetic mouse wound model, both intracellular vesicles and negative pressure wound therapy individually improved wound healing, but their combination exhibited a synergistic effect, resulting in faster wound closure, enhanced angiogenesis, and reduced inflammation. The combined treatment also exhibited excellent biocompatibility. These findings highlight the therapeutic potential of intracellular vesicles as an adjunct to negative pressure wound therapy for diabetic wound treatment. Article Highlights Chronic diabetic wounds are difficult to heal, and current treatments, such as negative pressure wound therapy, have limited effectiveness. The potential of intracellular vesicles derived from dental pulp stem cell lysate for diabetic wound healing is well worth exploring. Intracellular vesicles promoted angiogenesis, cell proliferation, and M2 macrophage polarization by inhibiting cGAS-STING signaling and restoring mitochondrial function. Combined with negative pressure wound therapy, intracellular vesicles accelerated wound healing in diabetic mice. Intracellular vesicles offer a promising cell-free strategy to enhance negative pressure wound therapy outcomes and improve diabetic wound treatment.
糖尿病性伤口是一个重大的临床和经济负担,影响患者和卫生保健系统。虽然目前的治疗方法,如负压伤口治疗,提供了好处,但其局限性需要替代策略。新发现的牙髓干细胞来源的细胞内囊泡因其治疗潜力而成为再生医学的一个有前途的候选物。使用HUVECs、HaCaTs和RAW264.7细胞进行的体外评估显示,细胞内囊泡增强细胞迁移、血管生成和增殖,同时抑制cGAS-STING途径。细胞内囊泡促进M2巨噬细胞极化,维持线粒体功能。在糖尿病小鼠伤口模型中,细胞内囊泡和负压伤口治疗都能促进伤口愈合,但它们的组合表现出协同效应,导致伤口愈合更快,血管生成增强,炎症减少。联合处理也表现出良好的生物相容性。这些发现强调了细胞内囊泡作为负压伤口治疗糖尿病伤口的辅助治疗潜力。慢性糖尿病伤口难以愈合,目前的治疗方法,如负压伤口治疗,效果有限。从牙髓干细胞裂解液中提取的细胞内囊泡在糖尿病伤口愈合中的潜力值得探索。细胞内囊泡通过抑制cGAS-STING信号和恢复线粒体功能,促进血管生成、细胞增殖和M2巨噬细胞极化。结合负压创面治疗,细胞内囊泡加速糖尿病小鼠创面愈合。细胞内囊泡为提高负压伤口治疗效果和改善糖尿病伤口治疗提供了一种有前途的无细胞策略。
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引用次数: 0
Heterogeneity in Phenotype and Early Metabolic Response to Lifestyle Interventions in Type 2 Diabetes in China Using a Tree-Like Representation 中国2型糖尿病患者对生活方式干预的表型和早期代谢反应的异质性
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-04 DOI: 10.2337/db25-0197
Yi Ding, Qi Zhou, Youjin Jiang, Qiuyu Cao, Xianglin Wu, Xiaoran Li, Yu Xu, Jieli Lu, Min Xu, Tiange Wang, Zhiyun Zhao, Yuhong Chen, Yan Liu, Jie Li, Guang Ning, Weiqing Wang, Yufang Bi, Mian Li
Deciphering the heterogeneity of type 2 diabetes in prognosis and treatment effect is essential. We used a novel dimensionality reduction approach to describe the type 2 diabetes phenotype continuum and visualize the difference in lifestyle intervention efficacy in Chinese patients. Based on 17,816 participants with newly diagnosed type 2 diabetes (aged ≥40 years) from a nationwide cohort, 12 key phenotypes were residualized for age and sex to construct a two-dimensional tree structure. The tree demonstrated the continuous type 2 diabetes spectrum and region-specific characteristics, with a mixed phenotypic trunk and three extreme phenotypic branches. When mapping data from 325 participants with type 2 diabetes from a randomized controlled trial onto the original tree, lifestyle intervention induced a migration toward the left part of tree, indicating an overall metabolic improvement. Specifically, diet intervention was more effective for glycemic control in the upper part of the tree and featured moderate diabesity and elevated insulin, whereas exercise intervention was more effective for glycemic control in the left side of the tree and featured less adiposity and better overall metabolic status. In summary, this analysis depicted the tree structure representing the underlying pathophysiological features of patients with newly diagnosed type 2 diabetes and identified tree regions with different sensitivity to diet or exercise intervention. The results have the potential to aid lifestyle intervention selection. Article Highlights Deciphering the heterogeneity of diabetes is essential for prognosis prediction and treatment guidance, but current classifications are flawed because they lose continuous phenotypic information. We wanted to determine if the novel data reduction method, the data dimensionality reduction tree (DDRTree), is applicable to visualizing the phenotypic continuum, comorbid conditions, and lifestyle intervention effects in Chinese patients with type 2 diabetes. The DDRTree structure demonstrated the region-specific characteristics of type 2 diabetes. Diet intervention was more effective for glycemic control in the upper part of the tree, featuring moderate diabesity, whereas exercise intervention was more effective in the left side of the tree, featuring less adiposity and better overall metabolic status. The Chinese type 2 diabetes tree structure indicates individualized pathophysiology and guides the selection of lifestyle intervention.
揭示2型糖尿病在预后和治疗效果上的异质性至关重要。我们使用一种新颖的降维方法来描述2型糖尿病表型连续体,并可视化中国患者生活方式干预效果的差异。基于来自全国队列的17,816名新诊断的2型糖尿病患者(年龄≥40岁),根据年龄和性别对12个关键表型进行残基化,以构建二维树结构。该树表现出连续的2型糖尿病谱和区域特异性特征,具有混合表型主干和三个极端表型分支。当将325名随机对照试验的2型糖尿病患者的数据映射到原始树时,生活方式干预诱导了向树左侧的迁移,表明整体代谢改善。具体而言,饮食干预对树上部的血糖控制更有效,表现为中度糖尿病和胰岛素升高,而运动干预对树左侧的血糖控制更有效,表现为脂肪较少,整体代谢状况更好。总之,该分析描绘了代表新诊断2型糖尿病患者潜在病理生理特征的树形结构,并确定了对饮食或运动干预不同敏感性的树形区域。研究结果可能有助于生活方式干预的选择。解读糖尿病的异质性对于预测预后和指导治疗至关重要,但目前的分类存在缺陷,因为它们失去了连续的表型信息。我们想确定数据降维树(DDRTree)这种新的数据降维方法是否适用于中国2型糖尿病患者的表型连续体、合并症和生活方式干预效果的可视化。DDRTree结构显示了2型糖尿病的区域特异性特征。在树的上部,饮食干预对血糖控制更有效,表现为中度糖尿病,而在树的左侧,运动干预更有效,表现为脂肪较少,整体代谢状况较好。中国2型糖尿病树状结构提示个体化病理生理,指导生活方式干预的选择。
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引用次数: 0
Cell Type–Specific Expression of Long Noncoding RNAs in Human Diabetic Kidneys Identifies TARID as a Key Regulator of Podocyte Function 长链非编码rna在人糖尿病肾脏细胞类型特异性表达鉴定TARID是足细胞功能的关键调节因子
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-03 DOI: 10.2337/db25-0272
Juliette A. de Klerk, Roderick C. Slieker, Wilson C. Parker, Haojia Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ’t Hart, Janneke H.D. Peerlings, Floris Herrewijnen, Heein Song, H. Siebe Spijker, Sébastien J. Dumas, Marije Koning, Loïs A.K. van der Pluijm, Hans J. Baelde, Tessa Gerrits, Joris I. Rotmans, Anton Jan van Zonneveld, Coen van Solingen, Benjamin D. Humphreys, Roel Bijkerk
Long noncoding RNAs (lncRNAs) play essential roles in cellular processes, often exhibiting cell type–specific expression and influencing kidney function. While single-cell RNA sequencing (scRNA-seq) has advanced our understanding of cellular specificity, past studies focus solely on protein-coding genes. We hypothesize that lncRNAs, due to their cell-specific nature, have crucial functions within particular renal cells and thereby play essential roles in renal cell function and disease. Using single-nucleus RNA-seq (snRNA-seq) data from kidney samples of five healthy individuals and six patients with diabetic kidney disease (DKD), we explored the noncoding transcriptome. Cell type–specific lncRNAs were identified, and their differential expression in DKD was assessed. Integrative analyses included expression quantitative trait loci (eQTL), genome-wide association studies (GWAS) for estimated glomerular filtration rate (eGFR), and gene regulatory networks. Functional studies focused on TCF21 antisense RNA inducing promoter demethylation (TARID), a lncRNA with podocyte-specific expression, to elucidate its role in podocyte health. We identified 174 lncRNAs with cell type–specific expression across kidney cell types. Of these, 54 lncRNAs were differentially expressed in DKD. Integrative analyses, including eQTL data, GWAS results for eGFR, and gene regulatory networks, pinpointed TARID, a podocyte-specific lncRNA, as a key candidate upregulated in DKD. Functional studies confirmed TARID's podocyte-specific expression and revealed its central role in actin cytoskeleton reorganization. Our study provides a comprehensive resource of single-cell lncRNA expression in the human kidney and highlights the importance of cell type–specific lncRNAs in kidney function and disease. Specifically, we demonstrate the functional relevance of TARID in podocyte health. ARTICLE HIGHLIGHTS This study provides a resource for kidney (cell type–specific) long noncoding (lnc)RNA expression and demonstrates the importance of lncRNAs in renal health. We identified 174 cell type-specific lncRNAs in the human kidney, with 54 showing altered expression in diabetic kidney disease. TCF21 antisense RNA inducing promoter demethylation (TARID), a podocyte-specific lncRNA upregulated in diabetic kidney disease, is crucial for actin cytoskeleton reorganization in podocytes.
长链非编码rna (lncRNAs)在细胞过程中发挥重要作用,通常表现出细胞类型特异性表达并影响肾功能。虽然单细胞RNA测序(scRNA-seq)提高了我们对细胞特异性的理解,但过去的研究只关注蛋白质编码基因。我们假设lncrna由于其细胞特异性,在特定的肾细胞中具有关键功能,从而在肾细胞功能和疾病中发挥重要作用。利用来自5名健康个体和6名糖尿病肾病(DKD)患者肾脏样本的单核RNA-seq (snRNA-seq)数据,我们探索了非编码转录组。鉴定细胞类型特异性lncrna,并评估其在DKD中的差异表达。综合分析包括表达数量性状位点(eQTL)、估计肾小球滤过率(eGFR)的全基因组关联研究(GWAS)和基因调控网络。功能研究集中在TCF21反义RNA诱导启动子去甲基化(TARID)上,这是一种具有足细胞特异性表达的lncRNA,旨在阐明其在足细胞健康中的作用。我们在肾细胞类型中鉴定出174种具有细胞类型特异性表达的lncrna。其中,54个lncrna在DKD中差异表达。包括eQTL数据、eGFR的GWAS结果和基因调控网络在内的综合分析指出,足细胞特异性lncRNA TARID是DKD上调的关键候选基因。功能研究证实了TARID的足细胞特异性表达,并揭示了它在肌动蛋白细胞骨架重组中的核心作用。我们的研究提供了人类肾脏中单细胞lncRNA表达的综合资源,并强调了细胞类型特异性lncRNA在肾脏功能和疾病中的重要性。具体来说,我们证明了TARID在足细胞健康中的功能相关性。本研究为肾脏(细胞类型特异性)长链非编码(lnc)RNA表达提供了资源,并证明了lncRNAs在肾脏健康中的重要性。我们在人类肾脏中鉴定了174个细胞类型特异性lncrna,其中54个在糖尿病肾病中表达改变。TCF21反义RNA诱导启动子去甲基化(TARID)是一种在糖尿病肾病中上调的足细胞特异性lncRNA,对足细胞中肌动蛋白细胞骨架重组至关重要。
{"title":"Cell Type–Specific Expression of Long Noncoding RNAs in Human Diabetic Kidneys Identifies TARID as a Key Regulator of Podocyte Function","authors":"Juliette A. de Klerk, Roderick C. Slieker, Wilson C. Parker, Haojia Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ’t Hart, Janneke H.D. Peerlings, Floris Herrewijnen, Heein Song, H. Siebe Spijker, Sébastien J. Dumas, Marije Koning, Loïs A.K. van der Pluijm, Hans J. Baelde, Tessa Gerrits, Joris I. Rotmans, Anton Jan van Zonneveld, Coen van Solingen, Benjamin D. Humphreys, Roel Bijkerk","doi":"10.2337/db25-0272","DOIUrl":"https://doi.org/10.2337/db25-0272","url":null,"abstract":"Long noncoding RNAs (lncRNAs) play essential roles in cellular processes, often exhibiting cell type–specific expression and influencing kidney function. While single-cell RNA sequencing (scRNA-seq) has advanced our understanding of cellular specificity, past studies focus solely on protein-coding genes. We hypothesize that lncRNAs, due to their cell-specific nature, have crucial functions within particular renal cells and thereby play essential roles in renal cell function and disease. Using single-nucleus RNA-seq (snRNA-seq) data from kidney samples of five healthy individuals and six patients with diabetic kidney disease (DKD), we explored the noncoding transcriptome. Cell type–specific lncRNAs were identified, and their differential expression in DKD was assessed. Integrative analyses included expression quantitative trait loci (eQTL), genome-wide association studies (GWAS) for estimated glomerular filtration rate (eGFR), and gene regulatory networks. Functional studies focused on TCF21 antisense RNA inducing promoter demethylation (TARID), a lncRNA with podocyte-specific expression, to elucidate its role in podocyte health. We identified 174 lncRNAs with cell type–specific expression across kidney cell types. Of these, 54 lncRNAs were differentially expressed in DKD. Integrative analyses, including eQTL data, GWAS results for eGFR, and gene regulatory networks, pinpointed TARID, a podocyte-specific lncRNA, as a key candidate upregulated in DKD. Functional studies confirmed TARID's podocyte-specific expression and revealed its central role in actin cytoskeleton reorganization. Our study provides a comprehensive resource of single-cell lncRNA expression in the human kidney and highlights the importance of cell type–specific lncRNAs in kidney function and disease. Specifically, we demonstrate the functional relevance of TARID in podocyte health. ARTICLE HIGHLIGHTS This study provides a resource for kidney (cell type–specific) long noncoding (lnc)RNA expression and demonstrates the importance of lncRNAs in renal health. We identified 174 cell type-specific lncRNAs in the human kidney, with 54 showing altered expression in diabetic kidney disease. TCF21 antisense RNA inducing promoter demethylation (TARID), a podocyte-specific lncRNA upregulated in diabetic kidney disease, is crucial for actin cytoskeleton reorganization in podocytes.","PeriodicalId":11376,"journal":{"name":"Diabetes","volume":"33 1","pages":""},"PeriodicalIF":7.7,"publicationDate":"2025-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144987390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proinflammatory Stress Activates Neutral Sphingomyelinase 2–Based Generation of a Ceramide-Enriched β-Cell EV Subpopulation 促炎应激激活中性鞘磷脂酶2 -基神经酰胺富集β-细胞EV亚群的生成
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-02 DOI: 10.2337/db24-0341
Jerry Xu, Irene Amalaraj, Andre De Oliveira, Arianna Harris-Kawano, Jacob R. Enriquez, Raghavendra G. Mirmira, Josie G. Eder, Meagan C. Burnet, Ivo Diaz Ludovico, Javier E. Flores, Ernesto S. Nakayasu, Emily K. Sims
β-cell extracellular vesicles (EVs) play a role as paracrine effectors in islet health, yet mechanisms connecting β-cell stress to changes in EV cargo and potential impacts on diabetes remain poorly defined. We hypothesized that β-cell inflammatory stress engages neutral sphingomyelinase 2 (nSMase2)–dependent EV formation pathways, generating ceramide-enriched small EVs that could impact surrounding β-cells. Consistent with this, proinflammatory cytokine treatment of INS-1 β-cells and human islets concurrently increased β-cell nSMase2 and ceramide abundance, as well as small EV ceramide species. Direct chemical activation or genetic knockdown of nSMase2, chemical treatment to inhibit cell death pathways, or treatment with a glucagon-like peptide-1 (GLP-1) receptor agonist also modulated β-cell EV ceramide. RNA sequencing of ceramide-enriched EVs identified a distinct set of miRNAs linked to β-cell function and identity. EV treatment from cytokine-exposed parent cells inhibited peak glucose-stimulated insulin secretion in wild-type recipient cells; this effect was abrogated when using EVs from nSMase2 knockdown parent cells. Finally, plasma EVs in children with recent-onset type 1 diabetes showed increases in multiple ceramide species. These findings highlight nSMase2 as a regulator of β-cell EV cargo and identify ceramide-enriched EV populations as a contributor to EV-related paracrine signaling under conditions of β-cell inflammatory stress and death. ARTICLE HIGHLIGHTS Mechanisms connecting β-cell stress to extracellular vesicle (EV) cargo and diabetes are poorly defined. Does β-cell inflammatory stress engage neutral sphingomyelinase 2 (nSMase2)–dependent EV formation to generate ceramide-enriched small EVs? Proinflammatory cytokines increased β-cell small EV ceramide via increases in nSMase2. Ceramide-enriched EVs housed distinct cargo linked to insulin signaling, and ceramide species were enriched in plasma EVs from individuals with type 1 diabetes. Ceramide-enriched EV populations are a potential contributor to β-cell EV-related paracrine signaling.
β细胞胞外囊泡(EVs)在胰岛健康中扮演着旁分泌效应物的角色,然而,将β细胞应激与EVs载重变化和对糖尿病的潜在影响联系起来的机制仍不清楚。我们假设β细胞炎症应激参与中性鞘磷脂酶2 (nSMase2)依赖的EV形成途径,产生富含神经酰胺的小EV,可以影响周围的β细胞。与此一致的是,促炎细胞因子处理INS-1 β-细胞和人胰岛同时增加β-细胞nSMase2和神经酰胺丰度,以及小EV神经酰胺种类。直接化学激活或基因敲低nSMase2,化学处理以抑制细胞死亡途径,或胰高血糖素样肽-1 (GLP-1)受体激动剂处理也可调节β-细胞EV神经酰胺。神经酰胺富集ev的RNA测序鉴定出一组与β细胞功能和身份相关的独特mirna。暴露于细胞因子的亲本细胞的EV处理抑制了野生型受体细胞葡萄糖刺激的胰岛素分泌峰值;当使用来自nSMase2敲低亲本细胞的ev时,这种效应被消除。最后,最近发病的1型糖尿病儿童血浆EVs显示多种神经酰胺种类的增加。这些发现强调了nSMase2作为β细胞EV货物的调节剂,并确定了在β细胞炎症应激和死亡条件下,神经酰胺富集的EV群体作为EV相关旁分泌信号的一个因素。连接β细胞应激与细胞外囊泡(EV)货物和糖尿病的机制尚不明确。β细胞炎症应激是否参与中性鞘磷脂酶2 (nSMase2)依赖性EV的形成以产生富含神经酰胺的小型EV ?促炎细胞因子通过增加nSMase2增加β细胞小EV神经酰胺。神经酰胺富集的ev含有与胰岛素信号相关的独特货物,神经酰胺种类在1型糖尿病患者的血浆ev中富集。神经酰胺富集的EV群体是β细胞EV相关旁分泌信号的潜在贡献者。
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引用次数: 0
Proteogenomic Discovery of Novel Open Reading Frames With HLA Immune Presentation on Human β-Cells 人类β细胞HLA免疫呈递的新型开放阅读框架的蛋白质基因组学发现
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-09-02 DOI: 10.2337/db24-0527
Kathryn Walters, Roberto Castro-Gutierrez, Soumyadeep Sarkar, Amber Baldwin, Alexandra S. Baker, Ali H. Shilleh, Amanda M. Anderson, Maki Nakayama, Tim Fugman, Ernesto S. Nakayasu, Neelanjan Mukherjee, Holger A. Russ
Ribosome profiling (Ribo-seq) measures translational regulation and reveals novel or unannotated open reading frames (nuORFs) otherwise difficult to identify. Recent reports demonstrate that nuORFs regulate gene expression and immune recognition, highlighting their emerging biological roles. Pancreatic β-cells are critical for maintaining euglycemic conditions, and β-cell impairment contributes to diabetes development. Identification of nuORF and protein/peptide products in human β-cells could reveal novel mechanisms that regulate β-cell function during homeostatic and disease conditions. Here, we applied a proteogenomic approach to human β-cells to define previously unknown protein/peptide products. First, we applied cell type–specific Ribo-seq to map the translatome of human stem cell–derived β-cells (sBCs). Pathways crucial for β-cell function and antigen presentation were subject to translational regulation. We detected a recently described immunogenic neoantigen, INS-DRiP, presumably originating from a downstream start site in INS mRNA. Moreover, our analysis revealed 965 novel nuORFs in sBCs, with a majority showing protein-level support. Comparison with primary human islets further validated nuORF translation and highlighted β-cell specificity. We identified a novel, primate-specific regulatory upstream ORF within TYK2, which is crucial for β-cell function and interferon response and has many variants strongly associated with type 1 diabetes. Finally, we used immunopeptidomics, HLA-binding prediction models, and T-cell coculture assays to validate the presentation and immunogenicity of preproinsulin peptides and nuORFs. Our findings underscore the importance of translational regulation in β-cell function and provide an important resource to the diabetes research community. ARTICLE HIGHLIGHTS We developed a cell type–specific proteogenomic approach to reveal novel or unannotated open reading frames (nuORFs) using transcriptomics, ribosomal profiling, and proteomic analysis of human pancreatic β-cells using stem cell–derived β-cells and/or cadaveric islets. Our analysis revealed translational regulation of β-cell–specific pathways during differentiation and identified 965 nuORFs, with a majority exhibiting protein support and substantial β-cell specificity. A primate-specific ORF located in the 5′ untranslated region of the type 1 diabetes risk gene TYK2 may act as a translational activator. We provide HLA class I immunopeptidomic data from cytokine-stimulated human β-cells and demonstrate their utility in coculture assays with autoreactive T-cell transductants. Taken together, our results define the human β-cell translatome, an important resource to the research field.
核糖体分析(Ribo-seq)测量翻译调控,揭示新的或未注释的开放阅读框(nuorf),否则难以识别。最近的报道表明,nuorf调节基因表达和免疫识别,突出了它们的新生物学作用。胰腺β细胞对维持血糖水平至关重要,而β细胞受损会导致糖尿病的发生。鉴定人类β细胞中的nuORF和蛋白/肽产物可以揭示在稳态和疾病条件下调节β细胞功能的新机制。在这里,我们将蛋白质基因组学方法应用于人类β细胞,以确定以前未知的蛋白质/肽产物。首先,我们应用细胞类型特异性核糖核酸序列(Ribo-seq)绘制了人类干细胞衍生β细胞(sbc)的翻译组。对β细胞功能和抗原呈递至关重要的途径受到翻译调节。我们检测到最近描述的免疫原性新抗原INS- drip,可能起源于INS mRNA的下游起始位点。此外,我们的分析在sbc中发现了965个新的nuorf,其中大多数显示出蛋白质水平的支持。与原代人胰岛的比较进一步证实了nuORF的翻译,并强调了β细胞特异性。我们在TYK2中发现了一个新的,灵长类特异性调控的上游ORF,它对β细胞功能和干扰素反应至关重要,并且有许多变体与1型糖尿病密切相关。最后,我们使用免疫肽组学、hla结合预测模型和t细胞共培养实验来验证胰岛素前原肽和nuorf的呈现和免疫原性。我们的发现强调了β细胞功能中翻译调控的重要性,并为糖尿病研究界提供了重要的资源。我们开发了一种细胞类型特异性蛋白质基因组学方法,利用转录组学、核糖体分析和人类胰腺β细胞的蛋白质组学分析,利用干细胞来源的β细胞和/或尸体胰岛,揭示新的或未注释的开放阅读框架(nuorf)。我们的分析揭示了分化过程中β细胞特异性途径的翻译调控,并鉴定出965个nuorf,其中大多数表现出蛋白质支持和显著的β细胞特异性。位于1型糖尿病风险基因TYK2 5 '非翻译区的灵长类特异性ORF可能作为翻译激活因子。我们提供了来自细胞因子刺激的人β细胞的HLA I类免疫肽组学数据,并证明了它们在与自身反应性t细胞转导剂共培养试验中的实用性。综上所述,我们的结果定义了人类β细胞翻译组,这是研究领域的重要资源。
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引用次数: 0
Novel Approach for Assessing Outcomes of Type 1 Diabetes Prevention Trials Over a Fixed Time Interval 评估固定时间间隔内1型糖尿病预防试验结果的新方法
IF 7.7 1区 医学 Q1 ENDOCRINOLOGY & METABOLISM Pub Date : 2025-08-29 DOI: 10.2337/db25-0310
Emily K. Sims, William E. Russell, David Cuthbertson, Jay S. Skyler, Laura M. Jacobsen, Heba M. Ismail, Maria J. Redondo, Brandon M. Nathan, Alice L.J. Carr, Peter N. Taylor, Colin M. Dayan, Alfonso Galderisi, Kevan C. Herold, Jay M. Sosenko
We evaluated whether a binary metabolic end point for change (Δ) from baseline to 1-year postrandomization could be useful in type 1 diabetes (T1D) prevention trials. Using 2-h oral glucose tolerance testing data from the stage 1 participants in the recent abatacept prevention trial and similar participants in the observational TrialNet Pathway to Prevention (PTP) study, we assessed Δmetabolic measures, plotted glucose and C-peptide response curves, and categorized vectors for Δ from baseline to 1 year as metabolic treatment failure versus success. Analyses were validated using the teplizumab prevention study. PTP participants with Δglucose >0 and ΔC-peptide <0 from baseline to 1 year were at substantially higher risk for stage 3 T1D than those with Δglucose <0 and ΔC-peptide >0 (P < 0.0001). Based on this, we compared placebo versus treatment groups in both trials for failure (Δglucose >0 with ΔC-peptide <0) versus success (Δglucose <0 with ΔC-peptide >0) after 1 year. Using this endpoint, a favorable metabolic impact of abatacept was found after 12 months of treatment. An analytic approach using a binary metabolic end point of failure versus success at a fixed time interval appears to detect treatment effects at least as well as standard primary end points with shorter follow-up. ARTICLE HIGHLIGHTS Challenges in time to event type 1 diabetes (T1D) prevention trial design can yield negative results even for treatments that may actually improve disease pathology. We evaluated whether a binary metabolic end point for 12-month change from baseline to 1 year postrandomization could be useful in T1D prevention trials. This approach detected treatment effects at least as well as standard primary end points with shorter follow-up. Fixed interval metabolic end points should be used in combination with traditional T1D end points to better understand treatment effects of preventive agents.
我们评估了从基线到随机化后1年的二元代谢变化终点(Δ)在1型糖尿病(T1D)预防试验中是否有用。利用最近abatacept预防试验的1期参与者和观察性TrialNet预防途径(PTP)研究的类似参与者的2小时口服葡萄糖耐量测试数据,我们评估了Δmetabolic措施,绘制了葡萄糖和c肽反应曲线,并将Δ从基线到1年的载体分类为代谢治疗失败与成功。使用teplizumab预防研究验证了分析。PTP参与者Δglucose &;gt;0和ΔC-peptide &;lt;从基线到1年的3期T1D风险明显高于Δglucose &;lt;0和ΔC-peptide &;gt;0 (P < 0.0001)。基于此,我们比较了两项试验中安慰剂组与治疗组在1年后的失败(Δglucose >;0与ΔC-peptide &;lt;0)与成功(Δglucose <;0与ΔC-peptide &;gt;0)。使用这个终点,治疗12个月后发现阿巴接受有良好的代谢影响。在固定的时间间隔内,使用失败与成功的二元代谢终点的分析方法似乎至少可以检测到治疗效果以及较短随访时间的标准主要终点。1型糖尿病(T1D)预防试验设计的及时挑战可能产生负面结果,即使治疗可能实际上改善疾病病理。我们评估了随机化后12个月从基线到1年的二元代谢终点是否可用于T1D预防试验。该方法在随访时间较短的情况下检测到治疗效果至少与标准主要终点一样好。固定间隔代谢终点应与传统T1D终点联合使用,以便更好地了解预防药物的治疗效果。
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Diabetes
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