Pub Date : 2026-02-01Epub Date: 2026-01-06DOI: 10.1016/j.ebiom.2025.106116
Lei Zhang, Mina Al-Saeedi, Aleksandar Denic, Kyra L Jordan, Ning Yang, Fei Yuan, Xiangyang Zhu, Ailing Xue, Hui Tang, Alfonso Eirin, Amir Lerman, Mary Fidler, LaTonya J Hickson, Andrew D Rule, Aleksandra Kukla, Lilach O Lerman
Background: Obesity is a major risk factor for kidney dysfunction, with cellular senescence and senescence-associated secretory phenotype (SASP) activation contributing to early kidney injury. Urinary extracellular vesicles (uEVs) provide a non-invasive approach to assess cellular stress. We hypothesised that obesity induces podocyte senescence detectable by podocyte-derived uEVs.
Methods: We recruited 28 obese (OB) individuals and 16 healthy volunteers (HV). Of these, uEVs from 21 OB (OB-1) and 10 HV (HV-1) were analysed for tubular-derived (urat1+, uromodulin+, or prominin+) or podocyte-specific (PODXL+) uEVs bearing markers of senescence (p16) and SASP (MCP-1) using flow cytometry. Their correlations with metabolic and urinary renal injury markers (kidney injury molecule-1 [KIM-1], neutrophil gelatinase-associated lipocalin [NGAL], tumour necrosis factor-alpha [TNF-α], proteinuria) were assessed. Furthermore, kidney biopsies obtained from comparable OB-2 (n = 7) and HV-2 (n = 6) subjects were examined for tissue podocyte senescence using immunofluorescence. Podocytes were also counted in a subset of HV (n = 5) and OB (n = 4) urine samples.
Findings: OB had elevated body mass index (BMI) but preserved kidney function. OB-1 exhibited significantly elevated P16+MCP-1+PODXL+ uEVs fractions compared to HV-1, which correlated with metabolic dysfunction (BMI, insulin resistance) and renal injury markers. Tubular-derived uEVs showed no differences between the groups. Kidney biopsies confirmed increased podocyte senescence (P16+ PODXL+ immunoreactivity) in OB-2 vs. HV-2, and numbers of urinary podocytes increased in OB.
Interpretation: Human obesity induces in persons with normal kidney function podocyte senescence, which is detectable non-invasively by uEVs.
Fundings: This study was partly supported by NIH grant numbers: DK120292, DK122734, HL158691, AG062104 (all LOL), and AG076537 (LJH). KDIGO provided support to Dr. Kukla to the 2024 Obesity and Chronic Kidney Disease Controversies Conference.
{"title":"Renal podocyte senescence in human obesity detected by urinary extracellular vesicles.","authors":"Lei Zhang, Mina Al-Saeedi, Aleksandar Denic, Kyra L Jordan, Ning Yang, Fei Yuan, Xiangyang Zhu, Ailing Xue, Hui Tang, Alfonso Eirin, Amir Lerman, Mary Fidler, LaTonya J Hickson, Andrew D Rule, Aleksandra Kukla, Lilach O Lerman","doi":"10.1016/j.ebiom.2025.106116","DOIUrl":"10.1016/j.ebiom.2025.106116","url":null,"abstract":"<p><strong>Background: </strong>Obesity is a major risk factor for kidney dysfunction, with cellular senescence and senescence-associated secretory phenotype (SASP) activation contributing to early kidney injury. Urinary extracellular vesicles (uEVs) provide a non-invasive approach to assess cellular stress. We hypothesised that obesity induces podocyte senescence detectable by podocyte-derived uEVs.</p><p><strong>Methods: </strong>We recruited 28 obese (OB) individuals and 16 healthy volunteers (HV). Of these, uEVs from 21 OB (OB-1) and 10 HV (HV-1) were analysed for tubular-derived (urat1<sup>+</sup>, uromodulin<sup>+</sup>, or prominin<sup>+</sup>) or podocyte-specific (PODXL<sup>+</sup>) uEVs bearing markers of senescence (p16) and SASP (MCP-1) using flow cytometry. Their correlations with metabolic and urinary renal injury markers (kidney injury molecule-1 [KIM-1], neutrophil gelatinase-associated lipocalin [NGAL], tumour necrosis factor-alpha [TNF-α], proteinuria) were assessed. Furthermore, kidney biopsies obtained from comparable OB-2 (n = 7) and HV-2 (n = 6) subjects were examined for tissue podocyte senescence using immunofluorescence. Podocytes were also counted in a subset of HV (n = 5) and OB (n = 4) urine samples.</p><p><strong>Findings: </strong>OB had elevated body mass index (BMI) but preserved kidney function. OB-1 exhibited significantly elevated P16<sup>+</sup>MCP-1<sup>+</sup>PODXL<sup>+</sup> uEVs fractions compared to HV-1, which correlated with metabolic dysfunction (BMI, insulin resistance) and renal injury markers. Tubular-derived uEVs showed no differences between the groups. Kidney biopsies confirmed increased podocyte senescence (P16<sup>+</sup> PODXL<sup>+</sup> immunoreactivity) in OB-2 vs. HV-2, and numbers of urinary podocytes increased in OB.</p><p><strong>Interpretation: </strong>Human obesity induces in persons with normal kidney function podocyte senescence, which is detectable non-invasively by uEVs.</p><p><strong>Fundings: </strong>This study was partly supported by NIH grant numbers: DK120292, DK122734, HL158691, AG062104 (all LOL), and AG076537 (LJH). KDIGO provided support to Dr. Kukla to the 2024 Obesity and Chronic Kidney Disease Controversies Conference.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106116"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12811474/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145917190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Early detection is a major clinical challenge in pancreatic cancer due to its nonspecific symptoms and frequent late-stage diagnosis. While predictive models using electronic health record (EHR) data show promise, their real world implementation remains underexplored. We previously developed a random survival forest (RSF) model to estimate pancreatic cancer risk using structured EHR data from 2007 to 2017. This study evaluates practical considerations for deploying such a model in a prospective clinical context.
Methods: We refit the original RSF model using a cohort from 2018 to 2019 and evaluated its performance on a 2020 cohort. We assessed how model refitting and different imputation strategies influenced predictive performance and compared execution times to evaluate computational feasibility. Three imputation strategies were tested: sub-model estimation (SME), stacked multiple imputation (SMI), and imputation via fixed chained equations (IFCE). To simulate real time use, we applied the model to 53 sequential weekly patient batches (with average batch size 190,206).
Findings: Refitting improved discrimination and calibration. Without refitting, the C-index ranged from 0.69 to 0.84 depending on imputation method; with refitting, it ranged from 0.79 to 0.83. The IFCE method achieved the best balance between performance (C-index: 0.83 with refit) and runtime (19.54 min). SME had the highest C-index (0.85) and sensitivity (18.41%) but required construction of multiple sub-models. SMI was the most computationally intensive, limiting its scalability in routine use. Calibration improved markedly with refitting. Model performance differed across racial and ethnic groups; calibration was poorest among Black patients but improved with SMI. Execution time varied substantially across methods.
Interpretation: Model refitting and appropriate handling of missing data improve the real world performance of predictive models. Among imputation approaches, IFCE offers the best trade-off between computational efficiency and predictive accuracy. These findings provide practical, implementation-focused guidance for deploying risk prediction models in prospective clinical settings.
Funding: Research reported in this publication was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01CA230442.
{"title":"Real world deployment of a pancreatic cancer risk model: impact of refitting, imputation, and computational burden.","authors":"Wansu Chen, Botao Zhou, Tiffany Q Luong, Fagen Xie, Bechien U Wu","doi":"10.1016/j.ebiom.2025.106118","DOIUrl":"10.1016/j.ebiom.2025.106118","url":null,"abstract":"<p><strong>Background: </strong>Early detection is a major clinical challenge in pancreatic cancer due to its nonspecific symptoms and frequent late-stage diagnosis. While predictive models using electronic health record (EHR) data show promise, their real world implementation remains underexplored. We previously developed a random survival forest (RSF) model to estimate pancreatic cancer risk using structured EHR data from 2007 to 2017. This study evaluates practical considerations for deploying such a model in a prospective clinical context.</p><p><strong>Methods: </strong>We refit the original RSF model using a cohort from 2018 to 2019 and evaluated its performance on a 2020 cohort. We assessed how model refitting and different imputation strategies influenced predictive performance and compared execution times to evaluate computational feasibility. Three imputation strategies were tested: sub-model estimation (SME), stacked multiple imputation (SMI), and imputation via fixed chained equations (IFCE). To simulate real time use, we applied the model to 53 sequential weekly patient batches (with average batch size 190,206).</p><p><strong>Findings: </strong>Refitting improved discrimination and calibration. Without refitting, the C-index ranged from 0.69 to 0.84 depending on imputation method; with refitting, it ranged from 0.79 to 0.83. The IFCE method achieved the best balance between performance (C-index: 0.83 with refit) and runtime (19.54 min). SME had the highest C-index (0.85) and sensitivity (18.41%) but required construction of multiple sub-models. SMI was the most computationally intensive, limiting its scalability in routine use. Calibration improved markedly with refitting. Model performance differed across racial and ethnic groups; calibration was poorest among Black patients but improved with SMI. Execution time varied substantially across methods.</p><p><strong>Interpretation: </strong>Model refitting and appropriate handling of missing data improve the real world performance of predictive models. Among imputation approaches, IFCE offers the best trade-off between computational efficiency and predictive accuracy. These findings provide practical, implementation-focused guidance for deploying risk prediction models in prospective clinical settings.</p><p><strong>Funding: </strong>Research reported in this publication was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01CA230442.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106118"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12813562/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145943203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-08DOI: 10.1016/j.ebiom.2025.106091
Jordan J Clark, Stefan Hatzl, Kirill Vasilev, Robert Andreata-Santos, Jeremy S Yong, Eva Mittler, Ezgi Kasikci, Kartik Chandran, Viviana Simon, Robert Krause, Florian Krammer
Background: Orthohantaviruses (hantaviruses) are emerging rodent-borne pathogens that can cause severe human disease. They are present on multiple continents and are responsible for thousands of human cases per year. Despite this, no licenced therapeutics are available, vaccines for most strains are lacking, and the immunological response to infection is poorly characterised. This study aimed to analyse the humoral immune response to Puumala virus (PUUV) infection to inform future studies focussing on the production of therapeutic monoclonal antibodies and vaccination strategies.
Methods: Serum was obtained from a cohort of 24 patients hospitalised with PUUV infection at four time points, covering the early acute, late acute, early convalescent, and late convalescent stages of the disease. The humoral immune responses at each time point were quantified, and cross-binding, cross-neutralising antibody responses were investigated. Serum cytokine levels were also interrogated, and expression was correlated with humoral outputs.
Findings: PUUV infection elicited a robust anti-PUUV neutralising antibody response. However, cross-reactive antibodies that were capable of binding diverse hantaviruses were also induced in late convalescence. Modulations in the abundance of IgG subclasses were evident following infection, with significant differences present months after infection.
Interpretation: This study demonstrates that broadly reactive anti-hantavirus antibodies are produced in response to Old-World hantavirus infection, but predominantly months after recovery. As this is concomitant with changes in IgG subtypes, our results suggest that PUUV infection promotes prolonged class-switching and somatic hypermutation, favouring conserved epitopes long after exposure.
Funding: Work at Mount Sinai was supported by Institutional Funds, work at the Medical University of Vienna was supported by Institutional Funds. The study was supported in part by the Styrian government, Austria (project no. ABT12-106729/2022-13) and the Austrian Science Fund (FWF) (number J 4737-B).
{"title":"Cross-binding antibodies capable of neutralising diverse hantaviruses are produced in response to Puumala virus infection.","authors":"Jordan J Clark, Stefan Hatzl, Kirill Vasilev, Robert Andreata-Santos, Jeremy S Yong, Eva Mittler, Ezgi Kasikci, Kartik Chandran, Viviana Simon, Robert Krause, Florian Krammer","doi":"10.1016/j.ebiom.2025.106091","DOIUrl":"10.1016/j.ebiom.2025.106091","url":null,"abstract":"<p><strong>Background: </strong>Orthohantaviruses (hantaviruses) are emerging rodent-borne pathogens that can cause severe human disease. They are present on multiple continents and are responsible for thousands of human cases per year. Despite this, no licenced therapeutics are available, vaccines for most strains are lacking, and the immunological response to infection is poorly characterised. This study aimed to analyse the humoral immune response to Puumala virus (PUUV) infection to inform future studies focussing on the production of therapeutic monoclonal antibodies and vaccination strategies.</p><p><strong>Methods: </strong>Serum was obtained from a cohort of 24 patients hospitalised with PUUV infection at four time points, covering the early acute, late acute, early convalescent, and late convalescent stages of the disease. The humoral immune responses at each time point were quantified, and cross-binding, cross-neutralising antibody responses were investigated. Serum cytokine levels were also interrogated, and expression was correlated with humoral outputs.</p><p><strong>Findings: </strong>PUUV infection elicited a robust anti-PUUV neutralising antibody response. However, cross-reactive antibodies that were capable of binding diverse hantaviruses were also induced in late convalescence. Modulations in the abundance of IgG subclasses were evident following infection, with significant differences present months after infection.</p><p><strong>Interpretation: </strong>This study demonstrates that broadly reactive anti-hantavirus antibodies are produced in response to Old-World hantavirus infection, but predominantly months after recovery. As this is concomitant with changes in IgG subtypes, our results suggest that PUUV infection promotes prolonged class-switching and somatic hypermutation, favouring conserved epitopes long after exposure.</p><p><strong>Funding: </strong>Work at Mount Sinai was supported by Institutional Funds, work at the Medical University of Vienna was supported by Institutional Funds. The study was supported in part by the Styrian government, Austria (project no. ABT12-106729/2022-13) and the Austrian Science Fund (FWF) (number J 4737-B).</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":" ","pages":"106091"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12905621/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145943147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-06DOI: 10.1016/j.ebiom.2025.106113
James Russ-Silsby, Kevin Colclough, Matthew B Johnson, Matthew N Wakeling, Nick D L Owens, Shenali A Amaratunga, Sarah E Flanagan, Kashyap A Patel, Andrew T Hattersley, Elisa De Franco
Background: Biallelic loss-of-function ZNF808 variants were recently identified as a cause of pancreatic agenesis characterised by insulin-treated permanent neonatal diabetes (PNDM), low birthweight and exocrine pancreatic insufficiency.
Methods: We investigated the phenotypic diversity caused by biallelic loss-of-function ZNF808 variants by screening a cohort of 4699 individuals with genetically undiagnosed monogenic diabetes: 335 with neonatal diabetes (NDM, diagnosed <6 months), 194 with infancy-onset diabetes (diagnosed 6-12 months) and 4170 diagnosed with diabetes between 1 and 60 years of age.
Findings: Through a combination of genome and targeted next-generation-sequencing, we identified 17 previously unreported individuals with biallelic loss-of-function ZNF808 variants, bringing the total number of cases identified in the Exeter cohort to 31 when combined with previously described cases. 30/31 individuals were born to related parents. Clinically, 19 had PNDM, whilst the remaining 12 had other diabetes phenotypes: 5 with infancy-onset diabetes, 4 with transient diabetes and 3 with diabetes diagnosed aged 10, 14 and 23 years. Individuals with ZNF808-diabetes did not always require insulin treatment, with sulphonylurea treatment reported in 3 individuals. Exocrine pancreatic function was not consistently affected across the cohort, with no clinical features of exocrine insufficiency reported in 17 individuals and normal exocrine function biochemically confirmed in one further individual.
Interpretation: Biallelic loss of ZNF808 results in a variable pancreatic phenotype ranging from pancreatic agenesis to adult-onset diabetes without exocrine insufficiency. ZNF808 gene testing should be considered in individuals with diabetes diagnosed after the neonatal period, especially if born to related parents.
{"title":"Loss of function variants in the primate-specific gene ZNF808 cause neonatal, transient and adult-onset diabetes.","authors":"James Russ-Silsby, Kevin Colclough, Matthew B Johnson, Matthew N Wakeling, Nick D L Owens, Shenali A Amaratunga, Sarah E Flanagan, Kashyap A Patel, Andrew T Hattersley, Elisa De Franco","doi":"10.1016/j.ebiom.2025.106113","DOIUrl":"10.1016/j.ebiom.2025.106113","url":null,"abstract":"<p><strong>Background: </strong>Biallelic loss-of-function ZNF808 variants were recently identified as a cause of pancreatic agenesis characterised by insulin-treated permanent neonatal diabetes (PNDM), low birthweight and exocrine pancreatic insufficiency.</p><p><strong>Methods: </strong>We investigated the phenotypic diversity caused by biallelic loss-of-function ZNF808 variants by screening a cohort of 4699 individuals with genetically undiagnosed monogenic diabetes: 335 with neonatal diabetes (NDM, diagnosed <6 months), 194 with infancy-onset diabetes (diagnosed 6-12 months) and 4170 diagnosed with diabetes between 1 and 60 years of age.</p><p><strong>Findings: </strong>Through a combination of genome and targeted next-generation-sequencing, we identified 17 previously unreported individuals with biallelic loss-of-function ZNF808 variants, bringing the total number of cases identified in the Exeter cohort to 31 when combined with previously described cases. 30/31 individuals were born to related parents. Clinically, 19 had PNDM, whilst the remaining 12 had other diabetes phenotypes: 5 with infancy-onset diabetes, 4 with transient diabetes and 3 with diabetes diagnosed aged 10, 14 and 23 years. Individuals with ZNF808-diabetes did not always require insulin treatment, with sulphonylurea treatment reported in 3 individuals. Exocrine pancreatic function was not consistently affected across the cohort, with no clinical features of exocrine insufficiency reported in 17 individuals and normal exocrine function biochemically confirmed in one further individual.</p><p><strong>Interpretation: </strong>Biallelic loss of ZNF808 results in a variable pancreatic phenotype ranging from pancreatic agenesis to adult-onset diabetes without exocrine insufficiency. ZNF808 gene testing should be considered in individuals with diabetes diagnosed after the neonatal period, especially if born to related parents.</p><p><strong>Funding: </strong>Wellcome Trust, Diabetes UK.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106113"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12808904/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145917243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-19DOI: 10.1016/j.ebiom.2026.106125
Jason N Kennedy, Stuthi Iyer, Peter C Nauka, Katherine M Reitz, Joyce Chang, Lu Tang, Donald Yealy, Derek C Angus, Rombout B E Amstel, Lonneke A van Vught, Christopher W Seymour
Background: Sepsis is common and deadly, and subtypes are proposed to guide precision treatment. However, little is known about the uncertainty in subtype classification, and its implications for trajectory and treatment response.
Methods: In multiple electronic health record and trial data of adults with sepsis, we assigned patients clinical sepsis subtypes (α, β, γ, or δ-type), and measured uncertainty by defining core (≥90%) and margin (<90%) strata for each subtype according to model-derived membership probabilities. In multivariable logistic regression models, we determined the association between subtype, core/margin strata, and two outcomes, i.) change in subtype over 48 h and ii.) 365-day mortality in the ProCESS randomised trial.
Findings: We included 35,691 adult patients (mean age 68 [SD 16] years; 51% male, 85% White, 5.7% in-hospital mortality) with community-acquired sepsis according to Sepsis-3. Most patients changed clinical sepsis subtype during the 48 h after presentation (82%) regardless of initial subtype. The majority of patients were in the margin stratum of the subtype (α-type: 70%, β-type: 66%, γ-type: 64%), except for those in δ-type (18% margin strata). The odds of subtype change over 48 h was increased in the margin strata (interaction p = 0.023), where, for example, patients with the margin delta subtype had significantly higher odds than patients with alpha core (ref) subtype (odds ratio, 7.13; 95% confidence interval [CI], 5.16-9.85). For risk-adjusted 365-day mortality in the ProCESS trial, the effect of randomised treatment was modified by the subtype margin strata (interaction p = 0.026).
Interpretation: In patients with community sepsis, clinical subtypes are dynamic. Patients on the subtype margin are more likely to change groups, and uncertainty of subtype classification modified treatment effects.
Funding: National Institutes of Health, National Institute of General Medical Sciences (R35GM119519).
{"title":"Fuzzy classification of sepsis subtypes and implications for trajectory and treatment.","authors":"Jason N Kennedy, Stuthi Iyer, Peter C Nauka, Katherine M Reitz, Joyce Chang, Lu Tang, Donald Yealy, Derek C Angus, Rombout B E Amstel, Lonneke A van Vught, Christopher W Seymour","doi":"10.1016/j.ebiom.2026.106125","DOIUrl":"10.1016/j.ebiom.2026.106125","url":null,"abstract":"<p><strong>Background: </strong>Sepsis is common and deadly, and subtypes are proposed to guide precision treatment. However, little is known about the uncertainty in subtype classification, and its implications for trajectory and treatment response.</p><p><strong>Methods: </strong>In multiple electronic health record and trial data of adults with sepsis, we assigned patients clinical sepsis subtypes (α, β, γ, or δ-type), and measured uncertainty by defining core (≥90%) and margin (<90%) strata for each subtype according to model-derived membership probabilities. In multivariable logistic regression models, we determined the association between subtype, core/margin strata, and two outcomes, i.) change in subtype over 48 h and ii.) 365-day mortality in the ProCESS randomised trial.</p><p><strong>Findings: </strong>We included 35,691 adult patients (mean age 68 [SD 16] years; 51% male, 85% White, 5.7% in-hospital mortality) with community-acquired sepsis according to Sepsis-3. Most patients changed clinical sepsis subtype during the 48 h after presentation (82%) regardless of initial subtype. The majority of patients were in the margin stratum of the subtype (α-type: 70%, β-type: 66%, γ-type: 64%), except for those in δ-type (18% margin strata). The odds of subtype change over 48 h was increased in the margin strata (interaction p = 0.023), where, for example, patients with the margin delta subtype had significantly higher odds than patients with alpha core (ref) subtype (odds ratio, 7.13; 95% confidence interval [CI], 5.16-9.85). For risk-adjusted 365-day mortality in the ProCESS trial, the effect of randomised treatment was modified by the subtype margin strata (interaction p = 0.026).</p><p><strong>Interpretation: </strong>In patients with community sepsis, clinical subtypes are dynamic. Patients on the subtype margin are more likely to change groups, and uncertainty of subtype classification modified treatment effects.</p><p><strong>Funding: </strong>National Institutes of Health, National Institute of General Medical Sciences (R35GM119519).</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106125"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12856465/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146009210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-02-03DOI: 10.1016/j.ebiom.2026.106151
Kim Hei-Man Chow, Ted Abel
Alzheimer's disease-related dementia (ADRD) is a progressive neurodegenerative condition characterised by cognitive decline and overlapping pathological features. Despite advances in diagnostic tools and therapies, challenges persist due to limited efficacy, high costs, and the complexity of ADRD pathophysiology. Evidence suggests that ADRD arises from a lifelong interplay of genetic, lifestyle, and environmental factors, with recent findings indicating potential neurodevelopmental origins. Proteins implicated in neurodegeneration, such as amyloid and tau, may play critical roles in early nervous system development, whereas disruptions during critical periods, such as adolescence, may increase later-life susceptibility to ADRD. The global prevalence of ADRD is projected to reach 153 million by 2050, emphasising the urgent need for prevention strategies in addition to therapeutic interventions. Reframing ADRD as a neurodevelopmental condition with a delayed onset may provide alternative insights into its aetiology, paving the way for alternative innovative therapeutic and preventive approaches.
{"title":"Neurodevelopmental origins of age-related neurodegenerative diseases.","authors":"Kim Hei-Man Chow, Ted Abel","doi":"10.1016/j.ebiom.2026.106151","DOIUrl":"10.1016/j.ebiom.2026.106151","url":null,"abstract":"<p><p>Alzheimer's disease-related dementia (ADRD) is a progressive neurodegenerative condition characterised by cognitive decline and overlapping pathological features. Despite advances in diagnostic tools and therapies, challenges persist due to limited efficacy, high costs, and the complexity of ADRD pathophysiology. Evidence suggests that ADRD arises from a lifelong interplay of genetic, lifestyle, and environmental factors, with recent findings indicating potential neurodevelopmental origins. Proteins implicated in neurodegeneration, such as amyloid and tau, may play critical roles in early nervous system development, whereas disruptions during critical periods, such as adolescence, may increase later-life susceptibility to ADRD. The global prevalence of ADRD is projected to reach 153 million by 2050, emphasising the urgent need for prevention strategies in addition to therapeutic interventions. Reframing ADRD as a neurodevelopmental condition with a delayed onset may provide alternative insights into its aetiology, paving the way for alternative innovative therapeutic and preventive approaches.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106151"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12890709/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146118199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-10DOI: 10.1016/j.ebiom.2025.106114
Reid Goodman, Alice Bewley, Andrew Atkinson, Helen Newland, Nicole J Tarlton, George Turabelidze, Kevin Hsueh, Cristian Bologa, Michael J Durkin, Victoria J Fraser, M Cristina Vazquez Guillamet
Background: Accurate monitoring of antimicrobial consumption is essential for developing effective stewardship interventions. Hospitals are mandated to report antibiotic treatment duration using the CDC's Standardized Antimicrobial Administration Ratio (SAAR). We aimed to create a metric for measuring antimicrobial spectrum to complement SAAR, benchmarked against local and individual resistance.
Methods: This retrospective cohort study utilised data from nine acute care hospitals within BJC Healthcare from January 2018 to December 2023. Adult patients meeting CDC sepsis event criteria were included, focussing on infections caused by Gram-negative bacilli (GNB). Data on patient characteristics, microbiology results, treatments, and timing were collected. We defined the antibiotic effective spectrum (AES) as the ratio of susceptible GNB to all GNB cultured. Mathematical optimisation identified the optimal antibiotic as the antibiotic with the narrowest effective spectrum active against the isolated GNB. We calculated the empirical (before culture results are available) and directed Optimal Spectrum Antibiotic Ratio (OSAR) as the ratio between the AES chosen clinically to the optimal AES, reported it for each hospital yearly, and compared it to SAAR and the Antibiotic Spectrum Index (ASI). Sensitivity analyses focused on empirical undertreatment (OSAR <1, where the empirical choice did not cover the cultured GNB).
Findings: We included 10,277 GNB cultured from clinical specimens in 7997 distinct patients. The AES ranged from 0.15 for ampicillin to 0.94 for amikacin. Empirical OSAR varied between 1.08 (95% CI 1.05-1.10) and 1.89 (95% CI 1.51-2.28), with undertreatment present in 1396 (13.6%) of cases overall and wide variations across hospitals. Directed OSAR was lower, ranging between 0.74 (95% CI 0.73-0.75) and 1.45 (95% CI 1.41-1.49). OSAR, SAAR and ASI had different trends across hospitals over the six study years.
Interpretation: The OSAR yielded different conclusions about antibiotic utilisation, complementing duration-based measures like SAAR. It determines the appropriateness of antibiotic spectrum based on local and individual resistance.
Funding: The project was funded by the CDC (5U54CK000609).
背景:准确监测抗菌药物的使用情况对于制定有效的管理干预措施至关重要。医院被要求使用疾病预防控制中心的标准化抗菌素管理比率(SAAR)报告抗生素治疗持续时间。我们的目标是创建一个衡量抗菌药物谱的指标,以补充SAAR,以当地和个体耐药性为基准。方法:本回顾性队列研究利用了2018年1月至2023年12月BJC Healthcare旗下9家急症护理医院的数据。符合CDC脓毒症事件标准的成年患者被纳入,重点是革兰氏阴性杆菌(GNB)引起的感染。收集患者特征、微生物学结果、治疗和时间的数据。我们将抗生素有效谱(AES)定义为敏感GNB与培养的所有GNB的比值。数学优化确定了对分离的GNB具有最窄有效谱活性的抗生素。我们计算了经验(在获得培养结果之前),并将最佳光谱抗生素比(OSAR)作为临床选择的AES与最佳AES之间的比率,每年报告每家医院的最佳光谱抗生素比,并将其与SAAR和抗生素光谱指数(ASI)进行比较。敏感性分析集中在经经验治疗不足(OSAR结果:我们纳入了7997例不同患者临床标本中培养的10,277个GNB。氨苄西林的AES为0.15,阿米卡星的AES为0.94。经验OSAR在1.08 (95% CI 1.05-1.10)和1.89 (95% CI 1.51-2.28)之间变化,总体上有1396例(13.6%)病例治疗不足,各医院差异很大。定向OSAR较低,介于0.74 (95% CI 0.73-0.75)和1.45 (95% CI 1.41-1.49)之间。在六年的研究中,OSAR、SAAR和ASI在各医院有不同的趋势。解释:OSAR得出了关于抗生素使用的不同结论,补充了SAAR等基于持续时间的措施。它根据局部和个体耐药性来确定抗生素谱的适宜性。项目资助:项目由CDC (5U54CK000609)资助。
{"title":"Optimal Spectrum Antibiotic Ratio for assessing antibiotic utilisation in sepsis caused by gram-negative bacilli.","authors":"Reid Goodman, Alice Bewley, Andrew Atkinson, Helen Newland, Nicole J Tarlton, George Turabelidze, Kevin Hsueh, Cristian Bologa, Michael J Durkin, Victoria J Fraser, M Cristina Vazquez Guillamet","doi":"10.1016/j.ebiom.2025.106114","DOIUrl":"10.1016/j.ebiom.2025.106114","url":null,"abstract":"<p><strong>Background: </strong>Accurate monitoring of antimicrobial consumption is essential for developing effective stewardship interventions. Hospitals are mandated to report antibiotic treatment duration using the CDC's Standardized Antimicrobial Administration Ratio (SAAR). We aimed to create a metric for measuring antimicrobial spectrum to complement SAAR, benchmarked against local and individual resistance.</p><p><strong>Methods: </strong>This retrospective cohort study utilised data from nine acute care hospitals within BJC Healthcare from January 2018 to December 2023. Adult patients meeting CDC sepsis event criteria were included, focussing on infections caused by Gram-negative bacilli (GNB). Data on patient characteristics, microbiology results, treatments, and timing were collected. We defined the antibiotic effective spectrum (AES) as the ratio of susceptible GNB to all GNB cultured. Mathematical optimisation identified the optimal antibiotic as the antibiotic with the narrowest effective spectrum active against the isolated GNB. We calculated the empirical (before culture results are available) and directed Optimal Spectrum Antibiotic Ratio (OSAR) as the ratio between the AES chosen clinically to the optimal AES, reported it for each hospital yearly, and compared it to SAAR and the Antibiotic Spectrum Index (ASI). Sensitivity analyses focused on empirical undertreatment (OSAR <1, where the empirical choice did not cover the cultured GNB).</p><p><strong>Findings: </strong>We included 10,277 GNB cultured from clinical specimens in 7997 distinct patients. The AES ranged from 0.15 for ampicillin to 0.94 for amikacin. Empirical OSAR varied between 1.08 (95% CI 1.05-1.10) and 1.89 (95% CI 1.51-2.28), with undertreatment present in 1396 (13.6%) of cases overall and wide variations across hospitals. Directed OSAR was lower, ranging between 0.74 (95% CI 0.73-0.75) and 1.45 (95% CI 1.41-1.49). OSAR, SAAR and ASI had different trends across hospitals over the six study years.</p><p><strong>Interpretation: </strong>The OSAR yielded different conclusions about antibiotic utilisation, complementing duration-based measures like SAAR. It determines the appropriateness of antibiotic spectrum based on local and individual resistance.</p><p><strong>Funding: </strong>The project was funded by the CDC (5U54CK000609).</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106114"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12825060/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145951429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-10DOI: 10.1016/j.ebiom.2025.106108
Cameron A B Smith, Harvey Wilson, Jipeng Yan, Meng-Xing Tang
Super-resolution ultrasound, with its ability to achieve sub-diffraction resolution and directly track microvascular flow velocity in vivo, offers a level of vascular information inaccessible previously. To fully realise its clinical value, quantitative vascular markers have been explored. In this review, we explore the quantitative super-resolution markers that have been reported, with a focus on occasions where markers have been applied in a clinical or pre-clinical setting, comparing healthy and diseased cases to test the validity and usefulness of these markers. We define all the used markers from structural markers such as vessel density to velocity metrics such as flow rate, we then provide a summary showing what has been attempted and what has been found successful. We hope that this review can act as a guide both as to the range of markers that currently exist as well as indications as to what markers show potential for each clinical application.
{"title":"Quantitative image markers of super-resolution ultrasound.","authors":"Cameron A B Smith, Harvey Wilson, Jipeng Yan, Meng-Xing Tang","doi":"10.1016/j.ebiom.2025.106108","DOIUrl":"10.1016/j.ebiom.2025.106108","url":null,"abstract":"<p><p>Super-resolution ultrasound, with its ability to achieve sub-diffraction resolution and directly track microvascular flow velocity in vivo, offers a level of vascular information inaccessible previously. To fully realise its clinical value, quantitative vascular markers have been explored. In this review, we explore the quantitative super-resolution markers that have been reported, with a focus on occasions where markers have been applied in a clinical or pre-clinical setting, comparing healthy and diseased cases to test the validity and usefulness of these markers. We define all the used markers from structural markers such as vessel density to velocity metrics such as flow rate, we then provide a summary showing what has been attempted and what has been found successful. We hope that this review can act as a guide both as to the range of markers that currently exist as well as indications as to what markers show potential for each clinical application.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106108"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12818234/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145951461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-28DOI: 10.1016/j.ebiom.2026.106140
Bahne H Bahners, Roxanne Lofredi, Hannah Voss, Ana Luísa de Almeida Marcelino, Lukas L Goede, Lucia K Feldmann, Alfons Schnitzler, Tilmann H Sander, Esther Florin, Andrea A Kühn
Background: Pallidal deep brain stimulation (DBS) has remarkable effects in patients with cervical dystonia. Yet, its neurophysiological mechanisms are not fully resolved to date. Converging evidence suggests that pallidal DBS modulates sensorimotor and cerebellar network activity in dystonia, possibly by disrupting pathologically enhanced low-frequency oscillations in the basal ganglia. Still, anatomical and electrophysiological findings have rarely been linked, and it is unclear whether oscillatory changes occur in the same network identified in neuroimaging studies.
Methods: In this cross-sectional study, we investigate the effects of pallidal DBS in patients with cervical dystonia using magnetoencephalography recordings on and off stimulation. We correlated DBS outcomes to the whole-cortex pattern of DBS-induced power changes in each cortical vertex.
Findings: This analysis revealed a distinct low-frequency electrophysiological signature that accounted for significant amounts of variance in DBS improvements across the cohort. The signature was characterised by negative peaks within the supplementary motor area and the motor cortex as well as positive peaks in prefrontal and cerebellar areas.
Interpretation: Our study sheds light on the cortical and cerebellar effects of pallidal DBS on a whole-cortex level and puts emphasis on low-frequency power modulation as a mechanism of effective stimulation beyond the basal ganglia in patients with cervical dystonia. Our findings might inform DBS programming and targeting as well as non-invasive stimulation strategies in the future.
Funding: Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)-Project-ID 424778381-TRR 295.
背景:苍白质深部脑刺激(Pallidal deep brain stimulation, DBS)治疗颈肌张力障碍疗效显著。然而,其神经生理机制至今尚未完全解决。越来越多的证据表明,白斑DBS调节肌张力障碍的感觉运动和小脑网络活动,可能是通过破坏基底节区病理增强的低频振荡。尽管如此,解剖学和电生理学的发现很少联系起来,而且尚不清楚振荡变化是否发生在神经影像学研究中发现的同一网络中。方法:在这项横断面研究中,我们利用脑磁图记录的刺激和关闭刺激,研究了pallidal DBS对颈肌张力障碍患者的影响。我们将DBS结果与DBS引起的每个皮质顶点功率变化的全皮质模式相关联。研究结果:该分析揭示了一个明显的低频电生理特征,该特征解释了整个队列中DBS改善的显著差异。该信号的特征是辅助运动区和运动皮层的负峰以及前额叶和小脑区域的正峰。解释:我们的研究在全皮质水平上揭示了白斑DBS对皮质和小脑的影响,并强调低频功率调制是颈肌张力障碍患者基底神经节以外的有效刺激机制。我们的研究结果可能为未来的DBS规划和靶向以及非侵入性刺激策略提供信息。资助:德国研究基金会(DFG)-项目编号424778381-TRR 295。
{"title":"Spatial signature of low-frequency network changes accounts for pallidal stimulation outcome in cervical dystonia.","authors":"Bahne H Bahners, Roxanne Lofredi, Hannah Voss, Ana Luísa de Almeida Marcelino, Lukas L Goede, Lucia K Feldmann, Alfons Schnitzler, Tilmann H Sander, Esther Florin, Andrea A Kühn","doi":"10.1016/j.ebiom.2026.106140","DOIUrl":"10.1016/j.ebiom.2026.106140","url":null,"abstract":"<p><strong>Background: </strong>Pallidal deep brain stimulation (DBS) has remarkable effects in patients with cervical dystonia. Yet, its neurophysiological mechanisms are not fully resolved to date. Converging evidence suggests that pallidal DBS modulates sensorimotor and cerebellar network activity in dystonia, possibly by disrupting pathologically enhanced low-frequency oscillations in the basal ganglia. Still, anatomical and electrophysiological findings have rarely been linked, and it is unclear whether oscillatory changes occur in the same network identified in neuroimaging studies.</p><p><strong>Methods: </strong>In this cross-sectional study, we investigate the effects of pallidal DBS in patients with cervical dystonia using magnetoencephalography recordings on and off stimulation. We correlated DBS outcomes to the whole-cortex pattern of DBS-induced power changes in each cortical vertex.</p><p><strong>Findings: </strong>This analysis revealed a distinct low-frequency electrophysiological signature that accounted for significant amounts of variance in DBS improvements across the cohort. The signature was characterised by negative peaks within the supplementary motor area and the motor cortex as well as positive peaks in prefrontal and cerebellar areas.</p><p><strong>Interpretation: </strong>Our study sheds light on the cortical and cerebellar effects of pallidal DBS on a whole-cortex level and puts emphasis on low-frequency power modulation as a mechanism of effective stimulation beyond the basal ganglia in patients with cervical dystonia. Our findings might inform DBS programming and targeting as well as non-invasive stimulation strategies in the future.</p><p><strong>Funding: </strong>Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)-Project-ID 424778381-TRR 295.</p>","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":" ","pages":"106140"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12905622/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084893","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-12DOI: 10.1016/j.ebiom.2026.106123
Xi Fu, Suli Huang
{"title":"Heatwaves, ageing, and dementia: assessing mortality risks and adaptation strategies in a warming China.","authors":"Xi Fu, Suli Huang","doi":"10.1016/j.ebiom.2026.106123","DOIUrl":"10.1016/j.ebiom.2026.106123","url":null,"abstract":"","PeriodicalId":11494,"journal":{"name":"EBioMedicine","volume":"124 ","pages":"106123"},"PeriodicalIF":10.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12828364/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145965555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}