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The influence of hypoxia-mediated CEACAM6 upregulation on epithelial cell and macrophage response in the context of gastric cancer 低氧介导的 CEACAM6 上调对胃癌上皮细胞和巨噬细胞反应的影响
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14352
Indrajit Poirah, Debashish Chakraborty, Pragyesh Dixit, Supriya Samal, Smaran Banerjee, Tathagata Mukherjee, Subhasis Chattopadhyay, Gautam Nath, Asima Bhattacharyya

Background

The hypoxic microenvironment is a key component of the gastric tumour niche. Carcinoembryonic antigen-related cell adhesion molecule 6 (CEACAM6) is upregulated in gastric cancer and is considered a novel biomarker for the disease. However, no prior studies have elaborated on the status of CEACAM6 and its role in the hypoxic gastric cancer niche.

Methods

In this short study, we evaluated the effect of hypoxia in modulating CEACAM6 level in gastric cancer cells (GCCs) through western blotting and determined the effect of CEACAM6 upregulation on gastric cancer progression through clonogenicity, cell proliferation and migration assays. The wound-healing ability of GCCs was downregulated by siRNA-mediated CEACAM6 silencing. Human gastric cancer biopsy samples were examined by immunofluorescence microscopy to assess the level of a hypoxia marker HIF1α and CEACAM6. The effect of empty vector or CEACAM6-expression on peripheral blood-derived mononuclear cell (PBMC)-derived macrophage polarization under normoxia or hypoxia was studied by incubating macrophages in conditioned medium collected from GCC cultures. Macrophage polarization status was observed using flow cytometry and fluorescence microscopy. Reactive oxygen species (ROS) generation by macrophages was evaluated using fluorescence microscopy.

Results

We identified that hypoxia promoted CEACAM6 in GCCs, and these cells acquired increased proliferative potential and migration ability. Moreover, the cell culture supernatant from hypoxia-exposed CEACAM6-overexpressing cells promoted an M2-like macrophage population and discouraged the M1 phenotype.

Conclusion

This study established that hypoxia increased CEACAM6 which promoted gastric cancer progression by influencing GCC proliferation and motility as well as macrophage polarization.

背景:缺氧微环境是胃肿瘤生态位的关键组成部分。癌胚抗原相关细胞粘附分子6 (CEACAM6)在胃癌中表达上调,被认为是胃癌的一种新的生物标志物。然而,目前尚无研究详细阐述CEACAM6的地位及其在缺氧胃癌生态位中的作用。方法:在这个简短的研究中,我们通过western blotting评估缺氧对胃癌细胞(GCCs) CEACAM6水平的调节作用,并通过克隆性、细胞增殖和迁移实验确定CEACAM6上调对胃癌进展的影响。sirna介导的CEACAM6沉默可下调gcc的创面愈合能力。采用免疫荧光显微镜检测人胃癌活检标本,以评估缺氧标志物HIF1α和CEACAM6的水平。通过将巨噬细胞置于GCC培养的条件培养基中,研究了空载体或ceacam6表达对常氧或缺氧条件下外周血源性单核细胞(PBMC)源性巨噬细胞极化的影响。采用流式细胞术和荧光显微镜观察巨噬细胞极化状态。荧光显微镜观察巨噬细胞产生活性氧(ROS)。结果:我们发现缺氧促进了gcc中CEACAM6的表达,这些细胞获得了增加的增殖潜力和迁移能力。此外,缺氧暴露的ceacam6过表达细胞的细胞培养上清促进了m2样巨噬细胞群,抑制了M1表型。结论:本研究证实,缺氧可使CEACAM6升高,并通过影响GCC增殖、运动及巨噬细胞极化促进胃癌进展。
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引用次数: 0
Reciprocity between the regulation of the expression and functions of CEACAM CEACAM表达调控与功能调控之间的相互关系。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14362
Sonia M. Najjar, M. Paula Macedo
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引用次数: 0
The role of CEACAMs in neutrophil function ceacam在中性粒细胞功能中的作用。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14349
Keith M. Skubitz

Background

In addition to the long-known antibacterial actions of neutrophils, neutrophils are recognized to have a variety of other effects and are functionally diverse. Neutrophils can either stimulate or inhibit B cells and T cells, regulate NK development and activity, augment or direct the resolution of inflammation, act as myeloid-derived suppressor cells, modulate tumour growth and metastasis and trigger autoimmune diseases. CEACAMs 1, 3, 6 and 8 are expressed on human neutrophils.

Methods

A literature review was performed on the role of CEACAMs in neutrophil function.

Results

CEACAMs 1, 6 and 8 can be upregulated from intracellular stores, while CEACAM3, an opsonin-independent phagocytic receptor, is constitutively expressed. CEACAM1 has an intracellular ITIM motif and an ITSM motif, and CEACAM3 has an ITAM-like motif; CEACAMs 6 and 8 are glycosylphosphatidylinositol-linked. CEACAM8 can also be released in a soluble form. These CEACAMs can interact with multiple other host CEACAMs as well as other molecules on bacteria, fungi and host cells, both transmitting and receiving signals. Known CEACAM-binding pathogens bind the CFG face of the N domain which is also important in CEACAM-CEACAM binding, although the ABDE face also appears to be involved in higher-order oligomers.

Conclusions

Understanding the exact role of each individual CEACAM in human neutrophils is complicated by the fact that the neutrophil CEACAMs can interact with multiple ligands. The data demonstrates some of the many roles of CEACAMs in neutrophil function and the extensive role of the neutrophil in human biology beyond its classical role as a short-lived phagocyte.

背景:除了长期以来众所周知的中性粒细胞抗菌作用外,中性粒细胞还被认为具有多种其他作用,而且功能多样。中性粒细胞可以刺激或抑制 B 细胞和 T 细胞,调节 NK 的发育和活性,增强或引导炎症的消退,充当髓源性抑制细胞,调节肿瘤的生长和转移,并引发自身免疫性疾病。CEACAMs 1、3、6 和 8 表达于人类中性粒细胞:方法:对 CEACAMs 在中性粒细胞功能中的作用进行了文献综述:结果:CEACAMs 1、6 和 8 可从细胞内储存库中上调,而 CEACAM3(一种不依赖于溶蛋白的吞噬受体)则是组成型表达的。CEACAM1 具有细胞内 ITIM 基团和 ITSM 基团,CEACAM3 具有 ITAM 样基团;CEACAMs 6 和 8 与糖基磷脂酰肌醇相连。CEACAM8 还能以可溶形式释放。这些 CEACAM 可与宿主的其他多种 CEACAM 以及细菌、真菌和宿主细胞上的其他分子相互作用,既可传递信号,也可接收信号。已知与 CEACAM 结合的病原体会结合 N 结构域的 CFG 面,这在 CEACAM 与 CEACAM 结合中也很重要,不过 ABDE 面似乎也参与了高阶寡聚体的结合:由于中性粒细胞 CEACAMs 可与多种配体相互作用,因此要了解每个 CEACAM 在人中性粒细胞中的确切作用就变得复杂了。这些数据显示了 CEACAMs 在中性粒细胞功能中的多种作用,以及中性粒细胞在人类生物学中的广泛作用,而不仅仅是其作为短寿命吞噬细胞的经典作用。
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引用次数: 0
CEACAM1 in vascular homeostasis and inflammation CEACAM1在血管稳态和炎症中的作用。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14345
Lisa Götz, Uwe Rueckschloss, Süleyman Ergün, Florian Kleefeldt

Introduction

The glycoprotein Carcinoembryonic Antigen-related Cell Adhesion Molecule 1 (CEACAM1), also known as CD66a, is a member of the immunoglobulin superfamily. It is expressed in a variety of tissues including epithelial, immune, as well as endothelial cells, and is crucial to diverse physiological and pathological mechanisms. This review aims to provide a comprehensive understanding of CEACAM1's multifaceted roles in vascular biology and inflammatory processes.

Methods

Directed literature research was conducted using databases, such as PubMed, and relevant studies were categorized based on the physiological effects of CEACAM1.

Results

CEACAM1 plays a pivotal role in vascular homeostasis, particularly influencing the formation, maturation, and aging of blood vessels, as well as the endothelial barrier function. It supports endothelium-dependent vasodilation and nitric oxide formation, thus promoting vascular integrity and regulating blood pressure. Additionally, CEACAM1 is of emerging importance to vascular inflammation and its potential clinical consequences.

Conclusion

CEACAM1 is a crucial regulator of vascular homeostasis and inflammation with significant implications for cardiovascular health. Despite the lack of understanding of tissue-specific modulation and isoform-dependent mechanisms, CEACAM1 could be a promising therapeutic target for the prevention of cardiovascular disease in the future.

糖蛋白癌胚抗原相关细胞粘附分子1 (CEACAM1),也称为CD66a,是免疫球蛋白超家族的一员。它在多种组织中表达,包括上皮细胞、免疫细胞和内皮细胞,对多种生理和病理机制至关重要。本文旨在全面了解CEACAM1在血管生物学和炎症过程中的多方面作用。方法:利用PubMed等数据库进行定向文献研究,并根据CEACAM1的生理作用对相关研究进行分类。结果:CEACAM1在血管稳态中起关键作用,尤其影响血管的形成、成熟、老化以及内皮屏障功能。它支持内皮依赖性血管扩张和一氧化氮的形成,从而促进血管完整性和调节血压。此外,CEACAM1在血管炎症及其潜在临床后果中具有重要意义。结论:CEACAM1是血管稳态和炎症的重要调节因子,对心血管健康具有重要意义。尽管缺乏对组织特异性调节和同型依赖机制的了解,但CEACAM1可能是未来预防心血管疾病的有希望的治疗靶点。
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引用次数: 0
Insights into circulating CEACAM1 in insulin clearance and disease progression: Evidence from the Portuguese PREVADIAB2 study 循环中的 CEACAM1 在胰岛素清除和疾病进展中的作用:来自葡萄牙 PREVADIAB2 研究的证据。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14344
Rita S. Patarrão, Maria João Meneses, Hilda E. Ghadieh, Laura Herrera, Sérgio Duarte, Rogério T. Ribeiro, João F. Raposo, Verena Schmitt, Bernhard B. Singer, Amalia Gastaldelli, Carlos Penha-Gonçalves, Sonia M. Najjar, M. Paula Macedo

Background

Type 2 diabetes (T2DM) and obesity are characterized by altered insulin metabolism and action. Reduced hepatic insulin clearance is increasingly recognized as a key contributor to hyperinsulinemia and insulin resistance. CEACAM1 promotes hepatic insulin clearance, and its loss in hepatocytes is associated with reduced insulin clearance in mice and men. This study examines whether CEACAM1 circulating levels reflect compromised insulin metabolism and resistance in the PREVADIAB2 cohort.

Methods

A total of 1019 individuals from the PREVADIAB2 cohort were evaluated for diabetes by 75 g-OGTT and classified according to WHO 2019 criteria. CEACAM1 circulating levels were measured by ELISA, and insulin metabolism parameters were calculated. Hierarchical clustering of insulin metabolic indices and CEACAM1 levels was performed. Statistical significance was assessed using Kruskal–Wallis and Wilcoxon–Mann–Whitney tests.

Results

BMI, insulin resistance (HOMA-IR), and hepatic steatosis progressively increased with disease severity. Insulin secretion rose and its clearance declined in parallel to circulating CEACAM1 levels in prediabetes and T2DM, indicating compensatory hyperinsulinemia. Hierarchical metabolic clustering identified four clusters with distinct patterns and further showed that insulin clearance positively correlated with circulating CEACAM1, especially in individuals with normoglycemia, lower obesity and hepatic steatosis. This suggests that circulating CEACAM1 can reflect the status of hepatic insulin clearance.

Conclusions

This study demonstrates a progressive increase in insulin resistance and hyperinsulinemia in parallel to elevated BMI and hepatic steatosis prevalence, accompanied by declining circulating CEACAM1 levels. Cluster analysis further linked reduced insulin clearance to lower circulating CEACAM1 levels, suggesting its potential usefulness as a biomarker for metabolic disease progression.

背景:2型糖尿病(T2DM)和肥胖以胰岛素代谢和作用改变为特征。肝脏胰岛素清除率降低越来越被认为是高胰岛素血症和胰岛素抵抗的关键因素。CEACAM1促进肝脏胰岛素清除,其在肝细胞中的缺失与小鼠和男性胰岛素清除减少有关。本研究探讨了在PREVADIAB2队列中CEACAM1循环水平是否反映胰岛素代谢和抵抗受损。方法:通过75 g-OGTT对来自PREVADIAB2队列的1019例个体进行糖尿病评估,并根据WHO 2019标准进行分类。ELISA法检测血清CEACAM1水平,计算胰岛素代谢参数。对胰岛素代谢指标和CEACAM1水平进行分层聚类。采用Kruskal-Wallis检验和Wilcoxon-Mann-Whitney检验评估统计学显著性。结果:BMI、胰岛素抵抗(HOMA-IR)和肝脂肪变性随着疾病严重程度的增加而逐渐增加。糖尿病前期和T2DM患者胰岛素分泌升高,清除率下降,与循环CEACAM1水平平行,提示代偿性高胰岛素血症。分层代谢聚类鉴定出四个具有不同模式的聚类,并进一步表明胰岛素清除率与循环CEACAM1呈正相关,特别是在血糖正常、低肥胖和肝脂肪变性的个体中。这表明循环中的CEACAM1可以反映肝脏胰岛素清除的状态。结论:该研究表明,胰岛素抵抗和高胰岛素血症的进行性增加与BMI升高和肝脂肪变性患病率平行,并伴有循环CEACAM1水平下降。聚类分析进一步将胰岛素清除率降低与循环CEACAM1水平降低联系起来,提示其作为代谢性疾病进展的生物标志物的潜在用途。
{"title":"Insights into circulating CEACAM1 in insulin clearance and disease progression: Evidence from the Portuguese PREVADIAB2 study","authors":"Rita S. Patarrão,&nbsp;Maria João Meneses,&nbsp;Hilda E. Ghadieh,&nbsp;Laura Herrera,&nbsp;Sérgio Duarte,&nbsp;Rogério T. Ribeiro,&nbsp;João F. Raposo,&nbsp;Verena Schmitt,&nbsp;Bernhard B. Singer,&nbsp;Amalia Gastaldelli,&nbsp;Carlos Penha-Gonçalves,&nbsp;Sonia M. Najjar,&nbsp;M. Paula Macedo","doi":"10.1111/eci.14344","DOIUrl":"10.1111/eci.14344","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Type 2 diabetes (T2DM) and obesity are characterized by altered insulin metabolism and action. Reduced hepatic insulin clearance is increasingly recognized as a key contributor to hyperinsulinemia and insulin resistance. CEACAM1 promotes hepatic insulin clearance, and its loss in hepatocytes is associated with reduced insulin clearance in mice and men. This study examines whether CEACAM1 circulating levels reflect compromised insulin metabolism and resistance in the PREVADIAB2 cohort.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>A total of 1019 individuals from the PREVADIAB2 cohort were evaluated for diabetes by 75 g-OGTT and classified according to WHO 2019 criteria. CEACAM1 circulating levels were measured by ELISA, and insulin metabolism parameters were calculated. Hierarchical clustering of insulin metabolic indices and CEACAM1 levels was performed. Statistical significance was assessed using Kruskal–Wallis and Wilcoxon–Mann–Whitney tests.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>BMI, insulin resistance (HOMA-IR), and hepatic steatosis progressively increased with disease severity. Insulin secretion rose and its clearance declined in parallel to circulating CEACAM1 levels in prediabetes and T2DM, indicating compensatory hyperinsulinemia. Hierarchical metabolic clustering identified four clusters with distinct patterns and further showed that insulin clearance positively correlated with circulating CEACAM1, especially in individuals with normoglycemia, lower obesity and hepatic steatosis. This suggests that circulating CEACAM1 can reflect the status of hepatic insulin clearance.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>This study demonstrates a progressive increase in insulin resistance and hyperinsulinemia in parallel to elevated BMI and hepatic steatosis prevalence, accompanied by declining circulating CEACAM1 levels. Cluster analysis further linked reduced insulin clearance to lower circulating CEACAM1 levels, suggesting its potential usefulness as a biomarker for metabolic disease progression.</p>\u0000 </section>\u0000 </div>","PeriodicalId":12013,"journal":{"name":"European Journal of Clinical Investigation","volume":"54 S2","pages":""},"PeriodicalIF":4.4,"publicationDate":"2024-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11646293/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142827958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanism and function of CEACAM1 splice isoforms CEACAM1剪接异构体的机制和功能。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14350
Kenneth J. Dery, Sonia M. Najjar, Nicole Beauchemin, John E. Shively, Jerzy W. Kupiec-Weglinski

Background

Alternative splicing is a fundamental mechanism in the post-transcriptional regulation of genes. The multifunctional transmembrane glycoprotein receptor carcinoembryonic antigen-related cell adhesion molecule 1 (CEACAM1) undergoes extensive alternative splicing to allow for tunable functions in cell signalling, adhesion and modulation of immune and metabolic responses. Splice isoforms that differ in their ectodomain and short or long cytoplasmic tail (CEACAM1-S/CEACAM1-L) have distinct functional roles. The mechanisms that regulate CEACAM1 RNA splicing remain elusive.

Methods

This narrative review summarizes the current knowledge of the mechanism and function of CEACAM1 splice isoforms. Historical perspectives address the biological significance of the glycosylated Ig domains, the variable exon 7, and phosphorylation events that dictate its signal transduction pathways. The use of small antisense molecules to target mis-spliced variable exon 7 is discussed.

Results

The Ig variable-like N domain mediates cell adhesion and immune checkpoint inhibitory functions. Gly and Tyr residues in the transmembrane (TM) domain are essential for dimerization. Calmodulin, Calcium/Calmodulin-dependent protein kinase II delta (CamK2D), Actin and Annexin A2 are binding partners of CEACAM1-S. Homology studies of the muCEACAM1-S and huCEACAM1-S TM predict differences in their signal transduction pathways. Hypoxia-inducible factor 1-α (HIF-1-α) induces alternative splicing to produce CEACAM1-S under limited oxygen conditions. Antisense small molecules directed to exon 7 may correct faulty expression of the short and long cytoplasmic tail splicing isoforms.

Conclusion

More pre-clinical and clinical studies are needed to elucidate the precise mechanisms by which CEACAM1 RNA splicing may be exploited to develop targeted interventions towards novel therapeutic strategies.

背景:替代剪接是基因转录后调控的基本机制。多功能跨膜糖蛋白受体癌胚抗原相关细胞粘附分子 1(CEACAM1)经历了广泛的剪接替代过程,从而在细胞信号、粘附以及免疫和代谢反应调节等方面实现了可调功能。外结构域和长短胞质尾不同的剪接异构体(CEACAM1-S/CEACAM1-L)具有不同的功能作用。CEACAM1 RNA剪接的调控机制仍未确定:本综述概述了目前有关 CEACAM1 剪接异构体的机制和功能的知识。从历史的角度探讨了糖基化 Ig 结构域、可变外显子 7 以及决定其信号转导途径的磷酸化事件的生物学意义。还讨论了使用反义小分子来靶向错误剪接的可变外显子 7 的问题:Ig可变样N结构域介导细胞粘附和免疫检查点抑制功能。跨膜(TM)结构域中的 Gly 和 Tyr 残基对二聚化至关重要。钙调蛋白、钙/钙调蛋白依赖性蛋白激酶 II delta(CamK2D)、肌动蛋白和附件蛋白 A2 是 CEACAM1-S 的结合伙伴。对 muCEACAM1-S 和 huCEACAM1-S TM 的同源性研究预测了它们信号转导途径的差异。缺氧诱导因子 1-α(HIF-1-α)诱导替代剪接,在有限的氧气条件下产生 CEACAM1-S。针对第7外显子的反义小分子可纠正短胞质尾和长胞质尾剪接异构体的错误表达:需要进行更多临床前和临床研究,以阐明 CEACAM1 RNA 剪接的精确机制,从而开发出新型治疗策略的靶向干预措施。
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引用次数: 0
Regulation of lipid storage and inflammation in the liver by CEACAM1 CEACAM1对肝脏脂质储存和炎症的调节。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14338
Sonia M. Najjar, John E. Shively

This review focuses on a special aspect of hepatic lipid storage and inflammation that occurs during nutritional excess in obesity. Mounting evidence supports that prolonged excess fatty acid (FA) uptake in the liver is strongly associated with hepatic lipid storage and inflammation and that the two processes are closely linked by a homeostatic mechanism. There is also strong evidence that bacterial lipids may enter the gut by a common mechanism with lipid absorption and that there is a set point to determine when their uptake triggers an inflammatory response in the liver. In fact, the progression from high uptake of FAs in the liver resulting in Metabolic dysfunction-associated steatotic liver disease (MASLD) to the development of the more serious Metabolic dysfunction-associated steatohepatitis (MASH) depends on the degree of inflammation and its progression from an acute to a chronic state. Thus, MASLD/MASH implicates both excess fatty acids and progressive inflammation in the aetiology of liver disease. We start the discussion by introduction of CD36, a major player in FA and lipopolysaccharide (LPS) uptake in the duodenum, liver and adipose tissue. We will then introduce CEACAM1, a major player in the regulation of hepatic de novo lipogenesis and the inflammatory response in the liver, and its dual association with CD36 in enterocytes and hepatocytes. We conclude that CEACAM1 and CD36 together regulate lipid droplet formation and inflammation in the liver.

本综述侧重于肥胖症营养过剩时肝脏脂质储存和炎症的一个特殊方面。越来越多的证据表明,肝脏长期过量吸收脂肪酸(FA)与肝脏脂质储存和炎症密切相关,而且这两个过程通过一种平衡机制紧密相连。还有强有力的证据表明,细菌的脂质可能通过与脂质吸收相同的机制进入肠道,并且有一个固定的点来决定它们的吸收何时会触发肝脏的炎症反应。事实上,从肝脏大量吸收脂肪酸导致代谢功能障碍相关性脂肪性肝病(MASLD)发展为更严重的代谢功能障碍相关性脂肪性肝炎(MASH),取决于炎症的程度及其从急性发展为慢性的过程。因此,MASLD/MASH 与过量脂肪酸和渐进性炎症都是肝病的病因。我们首先介绍 CD36,它是十二指肠、肝脏和脂肪组织吸收脂肪酸和脂多糖(LPS)的主要角色。然后,我们将介绍 CEACAM1,它是调节肝脏新生脂肪生成和肝脏炎症反应的主要角色,以及它与肠细胞和肝细胞中 CD36 的双重关联。我们的结论是,CEACAM1 和 CD36 共同调控肝脏中脂滴的形成和炎症反应。
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引用次数: 0
The emerging role of Fusobacteria in carcinogenesis 镰刀菌在致癌过程中的新作用。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-14 DOI: 10.1111/eci.14353
Raisha J. Gibbs, Adam C. Chambers, Darryl J. Hill

The Fusobacterium genus comprises Gram-negative, obligate anaerobic bacteria that typically reside in the periodontium of the oral cavity, gastrointestinal tract, and female genital tract. The association of Fusobacterial spp. with colorectal tumours is widely accepted, with further evidence that this pathogen may also be implicated in the development of other malignancies. Fusobacterial spp. influence malignant cell behaviours and the tumour microenvironment in various ways, which can be related to the multiple surface adhesins expressed. These adhesins include Fap2 (fibroblast-activated protein 2), CpbF (CEACAM binding protein of Fusobacteria), FadA (Fusobacterium adhesin A) and FomA (Fusobacterial outer membrane protein A). This review outlines the influence of Fusobacteria in promoting cancer initiation and progression, impacts of therapeutic outcomes and discusses potential therapeutic interventions where appropriate.

镰刀菌属由革兰氏阴性、厌氧细菌组成,通常栖息于口腔、胃肠道和女性生殖道的牙周。镰刀菌属与结肠直肠肿瘤的关系已被广泛接受,有进一步证据表明,这种病原体也可能与其他恶性肿瘤的发生有关。镰刀菌属以各种方式影响恶性细胞行为和肿瘤微环境,这可能与表达的多种表面粘附蛋白有关。这些粘附蛋白包括 Fap2(成纤维细胞活化蛋白 2)、CpbF(镰刀菌的 CEACAM 结合蛋白)、FadA(镰刀菌粘附蛋白 A)和 FomA(镰刀菌外膜蛋白 A)。本综述概述了镰刀菌在促进癌症发生和发展方面的影响、对治疗结果的影响,并在适当的情况下讨论了潜在的治疗干预措施。
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引用次数: 0
Residual risk prediction in anticoagulated patients with atrial fibrillation using machine learning: A report from the GLORIA-AF registry phase II/III 使用机器学习预测抗凝房颤患者的剩余风险:来自GLORIA-AF登记II/III期的报告
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-11 DOI: 10.1111/eci.14371
Yang Liu, Yang Chen, Ivan Olier, Sandra Ortega-Martorell, Bi Huang, Hironori Ishiguchi, Ho Man Lam, Kui Hong, Menno V. Huisman, Gregory Y. H. Lip, the GLORIA-AF Investigators

Background

Although oral anticoagulation decreases the risk of thromboembolism in patients with atrial fibrillation (AF), a residual risk of thrombotic events still exists. This study aimed to construct machine learning (ML) models to predict the residual risk in these patients.

Methods

Patients with newly diagnosed non-valvular AF were collected from the Global Registry on Long-Term Oral Anti-Thrombotic Treatment in Patients with Atrial Fibrillation (GLORIA-AF) registry. To predict the residual risk of the composite outcome of thrombotic events (defined as ischemic stroke, systemic embolism, transient ischemic attack and myocardial infarction), we constructed four prediction models using the logistic regression (LR), random forest, light gradient boosting machine and extreme gradient boosting machine ML algorithms. Performance was mainly evaluated by area under the receiver-operating characteristic curve (AUC), g-means and F1 scores. Feature importance was evaluated by SHapley Additive exPlanations.

Results

15,829 AF patients (70.33 ± 9.94 years old, 55% male) taking oral anticoagulation were included in our study, and 641 (4.0%) had residual risk, sustaining thrombotic events. In the test set, LR had the best performance with higher AUC trend of 0.712. RF has highest g-means of 0.295 and F1 score of 0.249. This was superior when compared with the CHA2DS2-VA score (AUC 0.698) and 2MACE score (AUC 0.696). Age, history of TE or MI, OAC discontinuation, eGFR and sex were identified as the top five factors associated with residual risk.

Conclusion

ML algorithms can improve the prediction of residual risk of anticoagulated AF patients compared to clinical risk factor-based scores.

背景:虽然口服抗凝降低心房颤动(AF)患者血栓栓塞的风险,但血栓事件的残余风险仍然存在。本研究旨在构建机器学习(ML)模型来预测这些患者的剩余风险。方法:从全球房颤患者长期口服抗血栓治疗登记中心(GLORIA-AF)收集新诊断的非瓣膜性房颤患者。为了预测血栓事件(定义为缺血性卒中、全身栓塞、短暂性缺血性发作和心肌梗死)复合结局的剩余风险,我们使用逻辑回归(LR)、随机森林、光梯度增强机和极端梯度增强机ML算法构建了四个预测模型。主要通过受试者工作特征曲线下面积(AUC)、g-means和F1评分来评价。特征重要性通过SHapley加性解释进行评估。结果:15829例口服抗凝的房颤患者(70.33±9.94岁,男性55%)纳入我们的研究,其中641例(4.0%)存在持续血栓形成事件的残留风险。在测试集中,LR表现最好,AUC趋势较高,为0.712。RF的最高g均值为0.295,F1得分为0.249。与CHA2DS2-VA评分(AUC 0.698)和2MACE评分(AUC 0.696)相比,这是优越的。年龄、TE或MI病史、OAC停药、eGFR和性别被确定为与剩余风险相关的前五大因素。结论:与基于临床危险因素评分相比,ML算法可以提高对抗凝房颤患者剩余风险的预测。
{"title":"Residual risk prediction in anticoagulated patients with atrial fibrillation using machine learning: A report from the GLORIA-AF registry phase II/III","authors":"Yang Liu,&nbsp;Yang Chen,&nbsp;Ivan Olier,&nbsp;Sandra Ortega-Martorell,&nbsp;Bi Huang,&nbsp;Hironori Ishiguchi,&nbsp;Ho Man Lam,&nbsp;Kui Hong,&nbsp;Menno V. Huisman,&nbsp;Gregory Y. H. Lip,&nbsp;the GLORIA-AF Investigators","doi":"10.1111/eci.14371","DOIUrl":"10.1111/eci.14371","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Although oral anticoagulation decreases the risk of thromboembolism in patients with atrial fibrillation (AF), a residual risk of thrombotic events still exists. This study aimed to construct machine learning (ML) models to predict the residual risk in these patients.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Patients with newly diagnosed non-valvular AF were collected from the Global Registry on Long-Term Oral Anti-Thrombotic Treatment in Patients with Atrial Fibrillation (GLORIA-AF) registry. To predict the residual risk of the composite outcome of thrombotic events (defined as ischemic stroke, systemic embolism, transient ischemic attack and myocardial infarction), we constructed four prediction models using the logistic regression (LR), random forest, light gradient boosting machine and extreme gradient boosting machine ML algorithms. Performance was mainly evaluated by area under the receiver-operating characteristic curve (AUC), g-means and F1 scores. Feature importance was evaluated by SHapley Additive exPlanations.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>15,829 AF patients (70.33 ± 9.94 years old, 55% male) taking oral anticoagulation were included in our study, and 641 (4.0%) had residual risk, sustaining thrombotic events. In the test set, LR had the best performance with higher AUC trend of 0.712. RF has highest g-means of 0.295 and F1 score of 0.249. This was superior when compared with the CHA<sub>2</sub>DS<sub>2</sub>-VA score (AUC 0.698) and 2MACE score (AUC 0.696). Age, history of TE or MI, OAC discontinuation, eGFR and sex were identified as the top five factors associated with residual risk.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusion</h3>\u0000 \u0000 <p>ML algorithms can improve the prediction of residual risk of anticoagulated AF patients compared to clinical risk factor-based scores.</p>\u0000 </section>\u0000 </div>","PeriodicalId":12013,"journal":{"name":"European Journal of Clinical Investigation","volume":"55 3","pages":""},"PeriodicalIF":4.4,"publicationDate":"2024-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/eci.14371","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142806498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Subtyping strokes using blood-based protein biomarkers: A high-throughput proteomics and machine learning approach. 使用基于血液的蛋白质生物标志物分型中风:一种高通量蛋白质组学和机器学习方法。
IF 4.4 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-10 DOI: 10.1111/eci.14372
Shubham Misra, Praveen Singh, Shantanu Sengupta, Manoj Kushwaha, Zuhaibur Rahman, Divya Bhalla, Pumanshi Talwar, Manabesh Nath, Rahul Chakraborty, Pradeep Kumar, Amit Kumar, Praveen Aggarwal, Achal K Srivastava, Awadh K Pandit, Dheeraj Mohania, Kameshwar Prasad, Nishant K Mishra, Deepti Vibha

Background: Rapid diagnosis of stroke and its subtypes is critical in early stages. We aimed to discover and validate blood-based protein biomarkers to differentiate ischemic stroke (IS) from intracerebral haemorrhage (ICH) using high-throughput proteomics.

Methods: We collected serum samples within 24 h from acute stroke (IS & ICH) and mimics patients. In the discovery phase, SWATH-MS proteomics identified differentially expressed proteins, which were validated using targeted proteomics in the validation phase. We conducted interaction network and pathway analyses using Cytoscape 3.10.0. We determined cut-off points using the Youden Index. We developed three prediction models using multivariable logistic regression analyses. We assessed the model performance using statistical tests.

Results: We included 20 IS and 20 ICH in the discovery phase and 150 IS, 150 ICH, and six stroke mimics in the validation phase. We quantified 375 proteins using SWATH-MS. Between IS and ICH, we discovered 20 differentially expressed proteins. In the validation phase, the combined prediction model including three biomarkers: GFAP (aOR 0.04; 95%CI .02-.11), MMP-9 (aOR .09; .03-.28), APO-C1 (aOR 5.76; 2.66-12.47) and clinical variables independently differentiated IS from ICH (accuracy: 92%, negative predictive value: 94%). Adding biomarkers to clinical variables improved discrimination by 26% (p < .001). Additionally, nine biomarkers differentiated IS from ICH within 6 h, while three biomarkers differentiated IS from mimics.

Conclusions: Our study demonstrated that GFAP, MMP-9 and APO-C1 biomarkers independently differentiated IS from ICH within 24 h and significantly improved the discrimination ability of prediction models. Temporal profiling of these biomarkers in the acute phase of stroke is warranted.

背景:早期快速诊断脑卒中及其亚型至关重要。我们旨在利用高通量蛋白质组学发现并验证基于血液的蛋白质生物标志物,以区分缺血性卒中(IS)和脑出血(ICH)。方法:采集急性脑卒中(IS和ICH)及模拟患者24 h内的血清样本。在发现阶段,SWATH-MS蛋白质组学鉴定了差异表达蛋白,并在验证阶段使用靶向蛋白质组学对其进行了验证。我们使用Cytoscape 3.10.0进行相互作用网络和途径分析。我们使用约登指数确定分界点。我们利用多变量逻辑回归分析建立了三个预测模型。我们使用统计检验来评估模型的性能。结果:我们在发现阶段纳入了20例IS和20例ICH,在验证阶段纳入了150例IS、150例ICH和6例卒中模拟。我们用SWATH-MS对375个蛋白进行定量。在IS和ICH之间,我们发现了20个差异表达蛋白。在验证阶段,联合预测模型包括三个生物标志物:GFAP (aOR 0.04;95%CI为0.02 - 0.11),MMP-9 (aOR为0.09;0.03 - 0.28), APO-C1 (aOR 5.76;2.66-12.47)和临床变量独立区分IS和ICH(准确率:92%,阴性预测值:94%)。结论:我们的研究表明GFAP、MMP-9和APO-C1生物标志物在24 h内独立区分IS和ICH,显著提高了预测模型的区分能力。这些生物标志物在中风急性期的时间谱分析是有必要的。
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引用次数: 0
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European Journal of Clinical Investigation
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