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Machine-learning and thresholding algorithms to automatically predict fishing effort of small-scale trawl fishery 自动预测小型拖网渔业捕捞强度的机器学习和阈值算法
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2024-01-05 DOI: 10.1007/s12562-023-01734-1

Abstract

To assess fishery resources, it is necessary to easily obtain information on catch per unit effort, which is a resource indicator. In this study, two algorithms were developed for predicting the fishing effort (number of fishing operations, daily operating distance, and daily operating time) of a small-scale trawl fishery. These algorithms predict fishing efforts after preprocessing (including deleting outliers from the raw data), followed by classification of the operating conditions and threshold processing based on the operation period. One algorithm uses a machine-learning model for the classification process, and the other uses thresholding. The mean prediction error of the machine-learning algorithm on three datasets ranged from 1% to 11%, 2% to 8%, and 1% to 5% in terms of the number of operations, operating time, and operating distance, whereas that of the thresholding algorithm ranged from 3% to 52%, 2% to 5%, and 2% to 7%, respectively. A sensitivity analysis of the amount of training data indicated that prediction was possible using 5 days of training data. The developed algorithms are potentially useful for fish stock assessment.

摘要 要评估渔业资源,就必须方便地获取作为资源指标的单位努力量渔获量信息。本研究开发了两种算法,用于预测小型拖网渔业的捕捞努力量(捕捞作业次数、日作业距离和日作业时间)。这些算法在预处理(包括删除原始数据中的异常值)后预测捕捞强度,然后根据作业期对作业条件和阈值进行分类处理。一种算法在分类过程中使用机器学习模型,另一种算法使用阈值处理。就操作次数、操作时间和操作距离而言,机器学习算法在三个数据集上的平均预测误差分别为 1%至 11%、2%至 8%和 1%至 5%,而阈值算法的平均预测误差分别为 3%至 52%、2%至 5%和 2%至 7%。对训练数据量的敏感性分析表明,使用 5 天的训练数据就可以进行预测。所开发的算法可用于鱼类种群评估。
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引用次数: 0
A paradigm shift: using catch and abundance indices to assess the impact of tuna purse seiner FAD and FSC fishing on the stock status of little tunny in the Northeast Atlantic Ocean 模式转变:利用渔获量和丰度指数评估金枪鱼围网FAD和FSC捕捞对东北大西洋小金枪鱼种群状况的影响
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-30 DOI: 10.1007/s12562-023-01745-y
Komba Jossie Konoyima, Richard Kindong, Jiangfeng Zhu

The Atlantic Ocean’s little tunny is a priority for research by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Limited studies exist on Northeast Atlantic Ocean stock dynamics, and conventional catch and abundance assessments are lacking. This study assesses the impacts of tuna purse seiner fish aggregating device (FAD) and free-swimming school (FSC) fishing and proposes models for assessment using ICCAT data aggregated into different time blocks. Applying JABBA (Just Another Bayesian Biomass Assessment) and CMSY++, model diagnostics indicate that the 2011–2021 time series arrangement offers more reliable stock status estimates. Both models show overfished status (biomass/biomass max sustainable yield [B/BMSY] < 0.5) from overfishing (fishing mortality/fishing mortality max sustainable yield [F/FMSY] > 1.5) by the FAD and FSC techniques. FAD catches have leveled with the stock's average surplus production (ASP), while FSC catches are closer to ASP. JABBA projections suggest BMSY for the stock in 2023–2024, with FSC and FAD catch limits of 3000–4000 tonnes. By implication, the stock may collapse from tuna purse seiner's FAD and FSC fishing unless catch limits are implemented. JABBA is most effective for little tunny with shorter catch and catch per unit effort (CPUE) data, while CMSY++ indicates overfished stock status with and without abundance indices. Both applied models are suitable for little tunny stock status prediction, but considering the abundance indices used in this study, management advice should be applied cautiously.

大西洋小金枪鱼是国际大西洋金枪鱼养护委员会(ICCAT)的重点研究对象。对大西洋东北部种群动态的研究有限,也缺乏常规的渔获量和丰度评估。本研究评估了金枪鱼围网集鱼装置(FAD)和自由游泳学校(FSC)捕捞的影响,并提出了利用 ICCAT 数据按不同时间块汇总的评估模型。应用 JABBA(Just Another Bayesian Biomass Assessment)和 CMSY++,模型诊断显示 2011-2021 年时间序列安排提供了更可靠的种群状况估计。两个模型都显示出过度捕捞状态(生物量/生物量最大持续产量[B/BMSY] <0.5),而过度捕捞状态(捕捞死亡率/捕捞死亡率最大持续产量[F/FMSY] >1.5)是由 FAD 和 FSC 技术造成的。FAD 渔获量与种群平均剩余产量(ASP)持平,而 FSC 渔获量更接近 ASP。根据 JABBA 预测,2023-2024 年为该种群的 BMSY 年,FSC 和 FAD 捕捞限量为 3000-4000 吨。这意味着,除非实施渔获量限制,否则金枪鱼围网渔船的 FAD 和 FSC 捕捞可能会导致种群崩溃。JABBA 对渔获量和单位渔获量(CPUE)数据较短的小金枪鱼最有效,而 CMSY++ 则在有丰度指数或无丰度指数的情况下显示种群的过度捕捞状态。这两种应用模型都适用于小金枪鱼种群状态预测,但考虑到本研究中使用的丰度指数,应谨慎应用管理建议。
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引用次数: 0
Role of cell proliferation in strobilation of moon jellyfish Aurelia coerulea 细胞增殖在月水母蝶变中的作用
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-28 DOI: 10.1007/s12562-023-01744-z
Karin Fujii, Hiroki Koyama, Hisato Kuniyoshi

The life cycle of the moon jellyfish Aurelia coerulea consists of sessile polyp and free-swimming jellyfish stages. Strobilation is a polyp-to-jellyfish transition comprising sequential segment formation (segmentation), subsequent morphogenesis into ephyrae (young jellyfish), and detachment of the ephyrae. Cell proliferation is involved in metamorphosis in various animals. In the present study, we examined the relationship between cell proliferation and strobilation in A. coerulea. To visualize cell proliferation at various stages of strobilation, 5-bromo-2′-deoxyuridine labeling experiments were conducted, in which cell proliferation was distributed in the segments and prospective regions of the next segment during segmentation. Cell proliferation in segments continues during ephyra morphogenesis. Hydroxyurea, a cell-cycle inhibitor, was administered to investigate cell proliferation in animals at different stages of strobilation. In this study, hydroxyurea interrupted the initiation of strobilation, segmentation, and ephyra morphogenesis, but not ephyra detachment. This suggests that cell proliferation plays a crucial role in generating a new segment and constructing the ephyra body.

月水母 Aurelia coerulea 的生命周期包括无梗多角体和自由游动水母两个阶段。变节是由息肉到水母的过渡阶段,包括依次形成节片(分节)、随后形态发生为幼体(幼水母)以及幼体脱离。细胞增殖参与了各种动物的变态过程。在本研究中,我们考察了库氏水母细胞增殖与蝶变之间的关系。为了观察茎叶不同阶段的细胞增殖情况,我们进行了 5-溴-2′-脱氧尿苷标记实验,细胞增殖分布在茎叶分裂过程中的节段和下一个节段的前瞻性区域。在斑马形态发生过程中,节段中的细胞增殖仍在继续。羟基脲是一种细胞周期抑制剂,用于研究处于不同发育阶段的动物的细胞增殖情况。在这项研究中,羟基脲中断了strobilation的启动、分节和斑块的形态发生,但没有中断斑块的脱落。这表明,细胞增殖在生成新节段和构建斑身的过程中起着至关重要的作用。
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引用次数: 0
Body size estimation method for seasonally growing farmed yellowtail Seriola quinqueradiata in an aquaculture net cage using a stereo camera 使用立体相机估算水产养殖网箱中季节性生长的养殖鰤鱼的体型大小的方法
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-28 DOI: 10.1007/s12562-023-01736-z
Kazusyoshi Komeyama, Atsushi Ikegami, Kichinosuke Fukuda, Azusa Ishida, Yuto Sasaki, Hitoshi Maeno, Shigeru Asaumi, Takashi Uchida, Yusei Katahira, Akio Seki, Tetsuo Oka, Yasuhiko Shiina, Yuki Takahashi

To determine the optimal method for monitoring the size distribution of cultivated yellowtail growth, we employed three different approaches: capture measurement, manual measurement using stereo cameras, and automatic measurement through stereo camera-based image recognition technology. Conventional capture measurements showed inadequate prediction interval owing to limited sample size, preventing accurate assessment of growth. Both manual and automatic camera measurements successfully conformed to a growth model exhibiting periodicity. The expected values derived from each model closely matched with the mean of landings conducted at the end of the study. However, the 95% prediction interval for manual measurement with cameras was comparable to that for the landing measurement, whereas the prediction interval for the automatic measurement with cameras was overestimated. Additionally, the growth rate of farmed yellowtail demonstrated seasonal fluctuations. Notably, the mean obtained from a single automatic measurement with cameras, prior to landing, significantly deviated from the overall mean of all measurements. This suggests a potential risk associated with relying on accidental outliers in a single measurement. Therefore, it is crucial to employ a growth model unaffected by outliers in continuous measurements to ensure reliable predictions.

为了确定监测养殖大黄鱼生长大小分布的最佳方法,我们采用了三种不同的方法:捕获测量、使用立体相机进行人工测量以及通过基于立体相机的图像识别技术进行自动测量。由于样本量有限,传统的捕获测量显示出不充分的预测区间,无法准确评估生长情况。人工测量和相机自动测量都成功地符合一个具有周期性的生长模型。每个模型得出的预期值都与研究结束时的上岸平均值非常吻合。不过,用照相机进行人工测量的 95% 预测区间与上岸测量的预测区间相当,而用照相机进行自动测量的预测区间则被高估了。此外,养殖大黄鱼的生长率也有季节性波动。值得注意的是,上岸前用照相机进行的单次自动测量得出的平均值与所有测量结果的总平均值有明显偏差。这表明,依赖单次测量中的意外异常值存在潜在风险。因此,在连续测量中采用不受异常值影响的生长模型以确保可靠的预测至关重要。
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引用次数: 0
Length–weight relationship and reproductive biology aspects of Sardinella melanura caught from the coastal waters of Phetchaburi, the Inner Gulf of Thailand 从泰国内湾碧差汶府沿海水域捕获的黑色沙丁鱼的长度-重量关系和生殖生物学方面的问题
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-22 DOI: 10.1007/s12562-023-01746-x
S. Kunlapapuk, Sathit Boonnom, Chombhak Klangrahad, Phitak Siriwong, P. Kongchum
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引用次数: 0
Effects of a combination of heating and pre-heat storage on texture and taste-active compounds of each part of yellowtail Seriola quinqueradiata 加热和预热贮藏相结合对鰤鱼各部位口感和味觉活性化合物的影响
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-21 DOI: 10.1007/s12562-023-01741-2
Ayumi Furuta, S. Tanimoto
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引用次数: 0
Evaluating bias in stereo camera measurements using swimming behavior simulations 利用游泳行为模拟评估立体相机测量的偏差
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-20 DOI: 10.1007/s12562-023-01742-1
Yuki Takahashi, Atsushi Ikegami, Hitoshi Maeno, Shigeru Asaumi, Akio Seki, Tetsuo Oka, Yasuhiko Shiina, Kazuyoshi Komeyama

The use of stereo camera systems to measure fish body size has gained attention in aquaculture systems management. However, the different correlations between swimming depth and size according to fish species can lead to measurement bias depending on camera range and position. This study accordingly applied a fish behavior model based on the Boid model to simulate the relationship among camera position, viewing range, and measurement results considering swimming depth behavior. A total of 722 simulated fish (yellowtail Seriola quinqueradiata) were placed into a rectangular aquaculture net pen model. Virtual cameras were located at different depths along the side, above, and below the pen to measure the total length of individual fish within view. Horizontally oriented cameras closer to the surface captured significantly larger/smaller individuals when the behavior model assumed that larger individuals swim at shallower/deeper depths; vertically oriented cameras facing down from the water surface or up from the bottom net provided mean total length measurements might close to the actual mean total length of the population when a wide viewing range was provided. The proposed simulation method can be applied to preliminarily evaluate the measurement biases inherent to fish behavior and thereby minimize their influence on camera measurements.

在水产养殖系统管理中,使用立体摄像系统测量鱼体大小已受到重视。然而,不同种类鱼类的游动深度和体型之间存在不同的相关性,这可能会导致测量偏差,具体取决于相机的拍摄范围和位置。因此,本研究应用了基于 Boid 模型的鱼类行为模型,模拟了考虑游泳深度行为的相机位置、观察范围和测量结果之间的关系。共将 722 条模拟鱼(大黄鱼)放入一个矩形水产养殖网围栏模型中。虚拟摄像机分别位于网箱侧面、上方和下方的不同深度,用于测量视野内单条鱼的总长度。当行为模型假定较大个体在较浅/较深处游动时,靠近水面的水平方向摄像头捕捉到的个体明显较大/较小;当提供的观察范围较宽时,从水面朝下或从底层网朝上的垂直方向摄像头提供的平均总长测量值可能接近种群的实际平均总长。建议的模拟方法可用于初步评估鱼类行为固有的测量偏差,从而将其对相机测量的影响降至最低。
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引用次数: 0
Effects of different carbon-to-nitrogen ratios on Nile Tilapia Oreochromis niloticus in the biofloc rearing system 不同碳氮比对生物絮凝物饲养系统中尼罗罗非鱼的影响
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-19 DOI: 10.1007/s12562-023-01740-3
Prasenjit Mali, Swagat Ghosh, Gadadhar Dash, Supratim Chowdhury

Biofloc technology (BFT) is gaining popularity in the aquaculture sector. In this study, the effects of different carbon-to-nitrogen (C:N) ratios in jaggery-supplemented BFT systems on water quality, microbial diversities, feed performance, and growth, welfare, and proximate composition of Nile tilapia (Oreochromis niloticus) were investigated. The study had a completely randomized design (312.5 g/m3 in water tanks containing 4000 L water) and was carried out in triplicate, with a control group without biofloc and three groups of BFT-treated Nile tilapia (0.50 ± 0.05 g) reared in different C:N ratios, i.e., 15:1 (CN15), 20:1 (CN20), and 25:1 (CN25), for 120 days. The fish were fed a commercial diet at 2–5% of their body weight daily. The BFT performed significantly (P < 0.05) better in all measured aspects. Lower dissolved oxygen, pH, ammonia, abundance of beneficial microbes like Firmicutes and Actinobacteria, higher floc volume, and total heterotrophic counts were observed with increasing C:N ratios. The highest survivability, highest body weight, lowest feed conversion ratio, and better stress and liver biomarkers, hematology, innate immunity and antioxidant properties were recorded in the BFT system with the lower C:N ratios. The best histological status of the liver and intestines was found in fish cultured in the CN15 group, followed by fish cultured in the CN20 and CN25 groups. Considering all aspects, the C:N ratio of 15:1 was the most suitable for the biofloc culture of Oreochromis niloticus.

生物絮团技术(BFT)在水产养殖领域越来越受欢迎。本研究调查了琼脂补充 BFT 系统中不同碳氮比(C:N)对尼罗罗非鱼(Oreochromis niloticus)的水质、微生物多样性、饲料性能以及生长、福利和近似物组成的影响。该研究采用完全随机设计(312.5 克/立方米,水箱中装有 4000 升水),一式三份,对照组不含生物絮团,三组经生物絮团处理的尼罗罗非鱼(0.50 ± 0.05 克)在不同的 C:N 比例(即 15:1 (CN15)、20:1 (CN20) 和 25:1 (CN25))下饲养 120 天。鱼每天摄入占体重 2-5% 的商品饲料。在所有测量指标上,BFT 的表现都明显更好(P < 0.05)。随着 C:N 比值的增加,溶解氧、pH 值、氨氮、有益微生物(如固着菌和放线菌)的丰度、絮状物体积和异养菌总数都有所降低。C:N 比率较低的 BFT 系统的存活率最高、体重最大、饲料转化率最低,应激和肝脏生物标志物、血液学、先天免疫和抗氧化特性也较好。CN15 组养殖的鱼类肝脏和肠道组织学状况最好,其次是 CN20 和 CN25 组。从各方面考虑,C:N 比为 15:1 的生物絮团最适合养殖黑线鲈。
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引用次数: 0
Efficacy of octopus feed encased within a collagen membrane 胶原蛋白膜包裹章鱼饲料的功效
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-17 DOI: 10.1007/s12562-023-01743-0
Yuta Suzumura, Keiji Matsubara, Shunzo Morii, Masami Abe, Ian G. Gleadall, Masazumi Nishikawa, Ayu Katayama, Goh Nishitani, Takashi Hukushima, Tuyoshi Yamazaki, Nobuhiko Akiyama

A feeding method suitable for rearing octopuses was investigated by preparing basic feed (ground crab or squid meat) enclosed within a collagen casing. Growth was compared between basic feed sealed in the casing and feed provided without a casing. No difference in growth was observed when the feed was squid, but with crab meat, both feeding efficiency and weight gain rate tended to be improved by encasement. When feeding on encased feed, octopuses were observed to feed not only by consuming the entire casing membrane, but also by eating only the edible portion inside the casing. Feed that was about to be eaten by octopuses was collected and measured for the enzyme activity associated with the feed, detecting protease activity, which is considered to be derived from the posterior salivary glands. It was concluded that encasement of feed in a collagen membrane not only improves the retention of soft feed materials within the membrane, but also suppresses the dispersal of enzymes when the octopus feeds, thus enabling the octopus to feed more efficiently.

研究了一种适用于饲养章鱼的喂养方法,即在胶原蛋白外壳中包裹基本饲料(碎蟹肉或鱿鱼肉)。比较了密封在外壳中的基本饲料和不带外壳的饲料的生长情况。当饲料是鱿鱼时,没有观察到生长差异,但当饲料是蟹肉时,饲喂效率和增重率都趋于提高。观察发现,章鱼在摄食有外壳的饲料时,不仅会吃掉整个外壳膜,而且还会只吃外壳内的可食用部分。收集即将被章鱼吃掉的饲料,测量与饲料相关的酶活性,检测蛋白酶活性,认为蛋白酶活性来自后唾液腺。得出的结论是,用胶原蛋白膜包裹饲料不仅能提高软饲料在膜内的保留率,还能在章鱼进食时抑制酶的扩散,从而使章鱼更有效地进食。
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引用次数: 0
Synbiotic administration in Japanese eels with prebiotic 1-kestose and probiotic Lactiplantibacillus plantarum FM8 improved feed efficiency and significantly reduced the levels of Edwardsiella 在日本鳗鱼中添加益生元 1-凯斯糖和益生元植物乳杆菌 FM8,可提高饲料效率并显著降低爱德华氏菌的水平
IF 1.9 4区 农林科学 Q3 FISHERIES Pub Date : 2023-12-07 DOI: 10.1007/s12562-023-01739-w
Tadashi Fujii, Masayuki Yoshikawa, Nobuhiro Kondo, Saki Yamakawa, Kohei Funasaka, Yoshiki Hirooka, Takumi Tochio

Bacterial infections are a significant concern in eel aquaculture. Edwardsiella causes severe systemic infections and high mortality rates. This study aimed to demonstrate that synbiotic oral administration could improve eels’ gut environment, health, and aquaculture productivity. After 1 month of administration in Japanese eel Anguilla japonica using synbiotics consisting of prebiotic 1-kestose, a fructooligosaccharide with a degree of polymerization of 3, and the probiotic Lactiplantibacillus plantarum FM8, isolated from fermented food, we discovered that feed efficiency was improved by more than 20%. This may partly be because the synbiotics significantly increased intestinal acetate concentrations (P = 0.0144). 16S rRNA gene amplicon sequencing and linear discriminant analysis effect size revealed that the relative abundance of the Romboutsia was significantly higher, and that of the Edwardsiella was significantly lower in the eel intestine of the synbiotic group (P = 0.0166 and 0.0497, respectively). The BLAST search revealed that all amplicon sequence variants classified as genus Edwardsiella had > 98% identity with the 16S rRNA gene of Edwardsiella tarda, Edwardsiella piscicida, or Edwardsiella anguillarum. Our synbiotic administration in eels exhibited a breakthrough effect in significantly reducing Edwardsiella and increasing acetate concentrations in the intestine, suggesting that our synbiotics could reduce the incidence of eel diseases and improve aquaculture productivity.

细菌感染是鳗鱼养殖中的一个重大问题。爱德华氏菌会导致严重的全身感染和高死亡率。本研究旨在证明口服益生菌可以改善鳗鱼的肠道环境、健康和养殖产量。在日本鳗鲡体内使用益生菌(由聚合度为 3 的果寡糖 1-kestose 和从发酵食品中分离的益生菌植物乳杆菌 FM8 组成)1 个月后,我们发现饲料效率提高了 20% 以上。部分原因可能是合成益生菌显著提高了肠道乙酸浓度(P = 0.0144)。16S rRNA 基因扩增片段测序和线性判别分析效应大小显示,在合生素组的鳗鱼肠道中,Romboutsia 的相对丰度明显较高,Edwardsiella 的相对丰度明显较低(P = 0.0166 和 0.0497,分别为 0.0166 和 0.0497)。BLAST 搜索结果显示,所有被归类为 Edwardsiella 属的扩增子序列变体与 Edwardsiella tarda、Edwardsiella piscicida 或 Edwardsiella anguillarum 的 16S rRNA 基因有 98% 的一致性。我们的合生素在鳗鱼体内的施用显示出突破性效果,可显著减少肠道中的爱德华氏菌并提高醋酸盐浓度,这表明我们的合生素可减少鳗鱼疾病的发生率并提高水产养殖产量。
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引用次数: 0
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