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Theoretical Study of Lamivudine Derivatives Invoking DFT based Descriptors 拉米夫定衍生物引用DFT描述符的理论研究
Pub Date : 2015-07-01 DOI: 10.4018/IJCCE.2015070103
T. Chakraborty, S. Dhail
Recently Maria S. Gualdesi et al., have reported about bioactive lamivudine and its carbonate derivatives with proved activity against human immunodeficiency disease anti-HIV and hepatitis B viruses anti-HBV respectively in simulated gastric and intestinal fluids samples. This is one of the simplest, sensitive, accurate and precise assays for determining all the compounds which are readily adaptable for routine use in clinical laboratories. Employing simple chromatographic technique, they have lucidly explained the kinetic and stability features of lamivudine and its carbonate derivatives. But a theoretical quantum mechanical study of aforesaid compounds is yet to explore. In this report, the authors have made a correlation between experimental properties of lamivudine derivatives with their theoretical counterparts. They have invoked DFT based global and local descriptors to explore the effect of substituents on activity and mechanistic pathway of instant compounds respectively. Their computed data reveals a hand to hand relationship between experimental and theoretical parameters. Finally, a QSAR model has been proposed in terms of DFT based global descriptors.
最近Maria S. Gualdesi等人报道了拉米夫定及其碳酸盐衍生物在模拟胃液和肠液样本中分别具有抗人类免疫缺陷疾病、抗hiv和抗hbv的生物活性。这是一种最简单、灵敏、准确和精确的测定所有化合物的方法,很容易适应临床实验室的常规使用。采用简单的色谱技术,清楚地解释了拉米夫定及其碳酸盐衍生物的动力学和稳定性特征。但上述化合物的理论量子力学研究还有待探索。在本报告中,作者对拉米夫定衍生物的实验性质与其理论对应物进行了相关性分析。他们分别调用基于DFT的全局描述符和局部描述符来探讨取代基对速溶化合物活性和机理途径的影响。他们的计算数据揭示了实验参数和理论参数之间的对应关系。最后,提出了一种基于DFT全局描述符的QSAR模型。
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引用次数: 3
The Prediction of the Performance of an Oil Reservoir by Proxy Model: A Case Study 用代理模型预测油藏动态:以实例为例
Pub Date : 2015-07-01 DOI: 10.4018/IJCCE.2015070104
A. Daghbandan, Seyed Mahdi Chalik
Simulation model of an undeveloped oil reservoir is full of uncertainty. Assessing the effect of these parameters on the simulation results, is very important task in reservoir engineering. Making a proxy model is a method for forecast reservoir performance under different production scenarios. In this study, GMDH-type neural network is used as a proxy model and also Experimental Design theory is used to get the most information full data set which is applied to the input of the neural network. The traditional way needs to very large number of simulation but this method is very time consuming and costly. A sensitivity analysis was conducted to understand the most important initial parameters. In this study, proxy model is created to predict FOPR, Field Oil Production Rate, in a reservoir under immiscible gas injection scenario to 15 years.
未开发油藏的模拟模型充满了不确定性。评价这些参数对模拟结果的影响,是油藏工程中非常重要的工作。建立代理模型是预测不同生产情景下油藏动态的一种方法。本研究采用gmdh型神经网络作为代理模型,并利用实验设计理论获得信息量最大的完整数据集,应用于神经网络的输入。传统的方法需要进行大量的仿真,而这种方法耗时长,成本高。进行敏感性分析以了解最重要的初始参数。在本研究中,建立了代理模型来预测非混相注气情景下15年的油田产油量。
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引用次数: 6
Some Recent Developments on the Synthesis, Chemical Reactivity, and Theoretical Studies of Tetroxanes 四环烷的合成、化学反应性及理论研究的新进展
Pub Date : 2013-09-10 DOI: 10.4018/ijcce.2013010105
N. Jorge, A. Hernández-Laguna, E. Castro
The authors present a review on some recent developments on the synthesis, chemical reactivity and theoretical studies of Tetroxanes analysing their main physical chemistry properties. The authors examine the critical points of the PES of different conformers, and reaction paths at singlet ground state and triplet state of the tetroxane, leader member of the cyclic diperoxide compound family.
综述了近年来四烷类化合物的合成、化学反应性和理论研究进展,分析了四烷类化合物的主要物理化学性质。本文研究了不同构象的PES临界点,以及环二过氧化合物家族的主要成员四己烷在单线态基态和三重态的反应路径。
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引用次数: 1
Molecular Classification of 5-Amino-2-Aroylquinolines and 4-Aroyl-6, 7, 8-Trimethoxyquinolines as Highly Potent Tubulin Polymerization Inhibitors 5-氨基-2-芳基喹啉和4-芳基- 6,7,8 -三甲氧基喹啉作为高效微管蛋白聚合抑制剂的分子分类
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070101
F. Torrens, G. Castellano
Algorithms for classification and taxonomy are proposed based on criteria as information entropy and its production. It is classified a series of 5-amino-2-aroylquinolines AAQs and 4-aroyl-6,7,8-trimethoxyquinolines TMQs combretastatin analogues for anti-cancer activity. 5-Amino-6-methoxy-2-aroylquinoline AAQ showed anti-proliferative activity more potent as compared to combretastatin A-4 CA4, against various human cancer cell lines and a multidrug resistance MDR cancer cell line. On the basis of AAQ/TMQ structure-activity relationship new derivatives are designed. The AAQs/TMQs are classified using nine characteristic chemical properties in molecules. Many classification algorithms are based on information entropy. When applying the procedures to sets of moderate size, an excessive number of results appear compatible with data and suffer a combinatorial explosion. However, after equipartition conjecture, one has a selection criterion between different variants resulting from classification between hierarchical trees. A classification of anti-cancer agents is obtained. The features denote positions R2-8 on the quinoline bicycle.
提出了基于信息熵及其产生准则的分类和分类算法。它被归类为一系列具有抗癌活性的5-氨基-2-芳基喹啉类aaq和4-芳基-6,7,8-三甲氧基喹啉类tmq。与combretastatin a -4 CA4相比,5-氨基-6-甲氧基-2-芳基喹啉AAQ对多种人类癌细胞系和耐多药耐药癌细胞系表现出更强的抗增殖活性。在AAQ/TMQ构效关系的基础上,设计了新的衍生物。aaq / tmq是根据分子的九种特征化学性质来分类的。许多分类算法都是基于信息熵的。当将程序应用于中等大小的集合时,过多的结果似乎与数据兼容,并遭受组合爆炸。然而,经过等分猜想后,在层次树之间的分类产生的不同变体之间有了选择标准。得到了抗癌药物的分类。这些特征表示喹啉环上R2-8的位置。
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引用次数: 6
A Three-Pass Algorithm for Generation of BE-Matrices from IUPAC Names 从IUPAC名称生成be矩阵的三遍算法
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070103
Sourav Mandal, Somnath Pal
One of the basic needs of chemoinformatics is to represents chemical compounds graphically in computer. Among several matrix representations of chemical graphs, BE-Matrix is one of the popular choices to represent molecules. There are several line notations available to input a chemical graph. Although several algorithms exist to convert from different line notations to suitable computer representations but using IUPAC Name, a line notation, to give input to the computer is not a popular method, because of the lack of suitable algorithm from IUPAC names to BE-Matrix or its variants. However, each and every chemist is familiar with IUPAC names, and therefore it calls for development of a suitable algorithm for such purpose. In this paper a three-pass algorithm for generating BE-Matrix from IUPAC name have been proposed and illustrated with suitable examples. The third pass of the algorithm can independently be used to convert from symbolic chemical names of any compound to BE-Matrix, thus making task of a chemist much simpler.
化学信息学的基本需求之一是用计算机图形化表示化合物。在化学图的几种矩阵表示中,BE-Matrix是表示分子的常用方法之一。有几种线条符号可用于输入化学图。虽然有几种算法可以将不同的行表示法转换为合适的计算机表示,但使用IUPAC名称(一种行表示法)向计算机输入并不是一种流行的方法,因为缺乏从IUPAC名称转换为BE-Matrix或其变体的合适算法。然而,每个化学家都熟悉IUPAC的名称,因此需要为此目的开发合适的算法。本文提出了一种由IUPAC名称生成BE-Matrix的三遍算法,并给出了相应的实例说明。该算法的第三步可以独立地将任何化合物的符号化学名称转换为be - matrix,从而使化学家的任务更加简单。
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引用次数: 4
(Liquid + Liquid) Equilibrium for Ternary System of (Water + Phenol + Cyclohexane) at T = 298.2 K (水+苯酚+环己烷)三元体系在T = 298.2 K时的(液+液)平衡
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070105
H. Ghanadzadeh, Milad Sangashekan, Shahin Asan
Experimental solubility curves and tie-line data for the water + phenol + 2-ethyl-1-hexanol system was obtained at T = 298.2 K and atmospheric pressure. The tie-line data was determined by techniques karl-fischer and refractometry. This ternary system exhibits type-2 behavior of LLE. Distribution coefficients and separation factors were measured to evaluate the extracting ability of the solvent. The consistency of the experimental tie-line data was determined through the Othmer-Tobias and Bachman equations. The data were correlated with the NRTL a = 0.25 and UNIQUAC models and the parameters estimated present root mean square deviations below 0.50%.
得到了水+苯酚+ 2-乙基-1-己醇体系在T = 298.2 K和常压条件下的实验溶解度曲线和联络线数据。系线数据由卡尔费歇尔法和折射法测定。该三元体系表现出LLE的2型行为。测定了溶剂的分布系数和分离系数,评价了溶剂的提取能力。利用other - tobias方程和Bachman方程确定了实验系线数据的一致性。数据与NRTL a = 0.25和UNIQUAC模型相关,参数估计的均方根偏差小于0.50%。
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引用次数: 2
Restoration of Coherent Population Movement from Noise-Induced Chaos in the Chemotaxis of E. Coli: A Fractal Interpretation 在大肠杆菌趋化性中,从噪声引起的混沌中恢复相干种群运动:分形解释
Pub Date : 2013-07-01 DOI: 10.4018/IJCCE.20130701010
P. Patnaik
Bacteria navigating in a chemically guided manner are under the impact of noise from at least three sources-inside the cells, at the binding sites between chemoattractants in the environment and corresponding receptors of the cells, and in the environment itself. For Escherichia coli as model system, compounded effects of these sources of noise were investigated recently by using the fractal dimensions of the trajectories of the cells as an index of the nature of population motility. It was observed that environmental noise can drive synchronized movement of a population toward a chemoattractant into stochastic chaos. Those results have been used here to explore the effectiveness of different kinds of noise filters in restoring coherent motion of the cells. An auto-associative neural filter was the best, followed by the extended Kalman filter. The performance of either filter depended on the relative rates of motion of the bacteria and the chemoattractant, and on whether the responses of the cells to fluctuations in the external chemoattractant was non-adaptive or adaptive. The results establish: a the validity and usefulness of fractal indexes to characterize noise-affected chemotaxis, b the significance of the effect of environmental noise on chemotactic motility, and c the effectiveness of a neural filter in rescuing coherent population movement from noise-induced chaos.
以化学方式导航的细菌受到来自至少三个来源的噪音的影响——细胞内部,环境中化学引诱剂与细胞相应受体之间的结合位点,以及环境本身。以大肠杆菌为模型系统,利用细胞运动轨迹的分形维数作为种群运动性质的指标,研究了这些噪声源的复合效应。研究发现,环境噪声可以使种群向化学引诱物的同步运动进入随机混沌状态。这些结果在这里被用来探讨不同类型的噪声滤波器在恢复细胞的相干运动的有效性。自关联神经滤波效果最好,其次是扩展卡尔曼滤波。这两种过滤器的性能取决于细菌和化学引诱剂的相对运动速率,以及细胞对外部化学引诱剂波动的反应是非适应性的还是适应性的。结果表明:分形指标在描述受噪声影响的趋化性方面的有效性和实用性;环境噪声对趋化性运动影响的重要性;神经滤波器在从噪声引起的混沌中拯救种群的相干运动方面的有效性。
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引用次数: 3
Modeling and Optimization of Poly Electrolyte Dosage in Water Treatment Process by GMDH Type- NN and MOGA 基于GMDH型神经网络和MOGA的水处理过程中聚电解质用量建模与优化
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070107
M. Akbarizadeh, Allahyar Daghbandan, M. Yaghoobi
Coagulation-flocculation is the most important parts of water treatment process. Traditionally, optimum pre coagulant dosage is determined by used jar tests in laboratory. However; jar tests are time-consuming, expensive, and less adaptive to changes in raw water quality in real time. Soft computing can be used to overcome these limitations. In this paper, multi-objective evolutionary Pareto optimal design of GMDH Type-Neural Network has been used for modeling and predicting of optimum poly electrolyte dosage in Rasht WTP, Guilan, Iran, using Input-output data sets. In this way, multi-objective uniform-diversity genetic algorithms MUGA are then used for Pareto optimization of GMDH networks. In order to achieve this modeling, the experimental data were divided into train and test sections. The predicted values were compared with those of experimental values in order to estimate the performance of the GMDH network. Also, Multi Objective Genetic Algorithms MOGA are then used for optimization of influence parameters in pre coagulant Poly electrolyte dosage.
混凝-絮凝是水处理过程中最重要的环节。传统上,最佳预混凝剂用量是通过实验室用瓶试验确定的。然而;罐子测试耗时、昂贵,而且对原水质量的实时变化适应性较差。软计算可以用来克服这些限制。本文采用GMDH型神经网络的多目标进化Pareto优化设计,利用输入-输出数据集对伊朗吉兰Rasht WTP的最佳聚电解质用量进行建模和预测。在此基础上,将多目标均匀-多样性遗传算法MUGA用于GMDH网络的Pareto优化。为了实现该建模,将实验数据分为列车段和测试段。为了估计GMDH网络的性能,将预测值与实验值进行了比较。并利用多目标遗传算法对预混凝剂中聚电解质投加量的影响参数进行优化。
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引用次数: 6
Physical-Mechanical Model of Fibrous Polymerized Bar Deformation at the Neck Zone 纤维聚合棒材颈区变形的物理力学模型
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070108
G. Aliyev
In the paper the author suggests a model of mechanical deformation of a polymerized bar made of fibres in the neck with regard to forces interacting with a matrix. In the paper, the author suggests an experimental-theoretical method that allows one to define the character of deformation non-homogeneity in the neck area. In particular, analytic dependence of mechanical properties of the material on longitudinal coordinate of the sample is established. Numerical comparison of theoretical results with experimental ones is given.
在本文中,作者提出了一种力学变形的模型,由纤维制成的聚合棒在颈部关于与一个矩阵相互作用的力。在本文中,作者提出了一种实验-理论相结合的方法来确定颈部变形非均匀性的特征。特别地,建立了材料力学性能与试样纵坐标的解析依赖关系。并对理论结果与实验结果进行了数值比较。
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引用次数: 3
K-Shell X-Ray Fluorescence Studies of Some Elements in the Atomic Number Range 26 = Z = 70 原子序数26 = Z = 70范围内某些元素的k壳x射线荧光研究
Pub Date : 2013-07-01 DOI: 10.4018/ijcce.2013070102
Punchithaya K. Sripathi, K. M. Balakrishna
K-shell fluorescence yields of low, medium Z and rare earth elements were determined using SiPIN detector and HPGe detector employing reflection geometry set up. Target atoms were excited using 59.5 keV gamma rays emerging from Am-241 source of strength 300 mCi. Background radiation and multiple scattering effects were minimized by properly shielding the detector. The elemental foils of uniform thickness and 99.9% purity were used in the present investigation. The fluorescent spectra were recorded in an 8K and 16K multi channel analyzer. The data were carefully analyzed and total K-shell fluorescence yields were calculated. The resulting yield values are compared with the available experimental and theoretical values.
采用SiPIN探测器和HPGe探测器,采用反射几何装置,测定了低、中Z和稀土元素的k壳荧光产率。靶原子是用强度为300 mCi的Am-241源发出的59.5 keV伽马射线激发的。通过对探测器进行适当的屏蔽,使本底辐射和多重散射效应降到最低。本研究采用厚度均匀、纯度为99.9%的元素箔。荧光光谱在8K和16K多通道分析仪上记录。仔细分析数据并计算总k壳荧光产率。所得的屈服值与现有的实验值和理论值进行了比较。
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引用次数: 1
期刊
Int. J. Chemoinformatics Chem. Eng.
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