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Contribution of Environmental Constituents in the Genomic Disruption of Cytokeratins 环境成分在细胞角蛋白基因组破坏中的作用
Pub Date : 2021-07-14 DOI: 10.5772/INTECHOPEN.96877
Vishnu Sharma, Tarun Kr. Kumawat, G. Sharma, R. Garg, M. Biyani
Cytokeratins are keratinous protein and assist cells to reduce mechanical stress on the intracytoplasmic layer of epithelial tissue. There are several unspecified mutations in the epithelial layer that may induces by environmental mutagens and pathogens. The unspecified mutations in the epithelium surface also disrupt biology of skin at multiple different levels and cause innate keratinizing disorders. These serve as a root generator of neurohormones and neuropeptides which mainly partake in the disruption. Generally, all 54 unique genes of human keratin partake in mutations and cause cutaneous tissue fragility, skin hypertrophic, and malignant transformation. In this chapter, unspecific factors that involved in the pathogenesis of skin diseases and the ways by which such keratin changes might harness to alleviate different skin conditions are also included. Consequently, the contribution of environmental changes in the frontier of mutations or misregulations of the cytokeratin genes, is also cited here.
细胞角蛋白是一种角质蛋白,帮助细胞减少上皮组织胞浆内层的机械应力。在上皮层中有几种未明确的突变,可能由环境诱变剂和病原体诱导。上皮表面未指明的突变也在多个不同水平上破坏皮肤的生物学,并引起先天性角化障碍。这些作为神经激素和神经肽的根源发生器,主要参与破坏。一般来说,人类角蛋白的54个独特基因都参与突变,导致皮肤组织脆弱、皮肤肥大和恶性转化。在本章中,涉及皮肤疾病发病机制的非特异性因素以及角蛋白变化可能缓解不同皮肤状况的方法也被包括在内。因此,环境变化在细胞角蛋白基因突变或调控不当的前沿的贡献,也被引用在这里。
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引用次数: 1
Studies on Basic Chromosome Number, Ploidy Level, Chromosomal Association and Configuration and Meiotic Behavior in Mulberry (Morus Spp.) 桑树基本染色体数目、倍性水平、染色体关联与构型及减数分裂行为的研究
Pub Date : 2021-07-14 DOI: 10.5772/INTECHOPEN.97143
Koluru Honnegowda Venkatesh
Mulberry leaves are primary food for silkworm, Bombyx mori L. to feed silkworms and harvest quality silk cocoons. Mulberry belongs to family Moraceae and includes 60 species found distributed in both Hemisphere. In mulberry, chromosome numbers are varies from 2n = 28 to 22n = 308 (Diploid to Decosoploid) with ploidy level x to 22x. Based on chromosome numbers and meiotic behaviors x = 14 has been considered as basic chromosome numbers of the genus. In the present study, two diploids, two uneuploids, two triploids and two teteraploids mulberry varieties were selected for detailed chromosomal numbers and meiotic behaviors belongs to three species, namely Morus indica, Morus alba and Morus latifolia. Varieties, Vishaala and Kosen were diploids with 2n = 2x = 28 chromosomes and varieties Ber-S1 and S13 were uneuploids with 2n = 30 chromosomes belongs Morus indica. Varieties NAO Khurkul and KPG-1 were triploids with 2n = 3x = 42 chromosomes belongs to Moru alba and varieties Kokuso and Icheihei were tetraploids with 2n = 4x = 56 chromosomes. Diploids and uneuploids were showed normal meiosis with high pollen fertility and triploids and teteraploids were showed abnormal meiosis with low pollen fertility, due to virtue of higher ploidy level have been discussed in this chapter.
桑叶是家蚕的主要食物,用于喂养家蚕和收获优质蚕茧。桑树属桑科,包括60种,分布在两个半球。桑树染色体数目从2n = 28到22n = 308不等(二倍体到Decosoploid),倍性水平为x到22x。基于染色体数目和减数分裂行为,x = 14被认为是该属的基本染色体数目。本研究选取桑树品种2个二倍体、2个非整倍体、2个三倍体和2个四倍体,对其染色体数量和减数分裂行为进行了详细分析,分别属于籼桑(Morus indica)、白桑(Morus alba)和桑树(Morus latifolia) 3个物种。品种Vishaala和Kosen为二倍体,染色体数为2n = 2x = 28;品种Ber-S1和S13为非整倍体,染色体数为2n = 30。品种NAO Khurkul和kkg -1为三倍体,染色体数为2n = 3x = 42;品种Kokuso和Icheihei为四倍体,染色体数为2n = 4x = 56。二倍体和非整倍体表现为正常减数分裂,花粉育性高,三倍体和四倍体表现为异常减数分裂,花粉育性低,这是本章讨论的原因。
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引用次数: 0
Heterochromatin Dynamics in Response to Environmental Stress in Amazonian Fish 亚马逊河鱼类对环境胁迫的异染色质动态响应
Pub Date : 2021-05-10 DOI: 10.5772/INTECHOPEN.94929
D. Matoso, M. Silva, Hallana Cristina Menezes da Silva, E. Feldberg, R. Artoni
Transcriptionally inactive portions of genomic DNA, condensed with histones and architectural proteins, are known as heterochromatic regions, often positive C band. The advent of epigenetics and new methodological approaches, showed that these regions are extremely dynamic and responsive to different types of environmental stress. The relationship of the constitutive heterochromatin with the transposable elements inactivation, especially from the Rex family, seems to be a frequent condition in fish. In this manuscript we review the existing knowledge of the nature and function of these genomic regions, based on species-based studies, with a focus on species of fish from the Amazon region.
基因组DNA的转录无活性部分,与组蛋白和建筑蛋白凝聚,称为异色区,通常为正C带。表观遗传学的出现和新的方法方法表明,这些区域是非常动态的,并对不同类型的环境胁迫作出反应。本构异染色质与转座因子失活的关系,特别是在鱼类中,似乎是一种常见的情况。在这份手稿中,我们回顾了现有的知识,这些基因组区域的性质和功能,基于物种为基础的研究,重点是来自亚马逊地区的鱼类物种。
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引用次数: 1
Composition and Nature of Heterochromatin in the Electrical Fish (Knifefishes) Gymnotus (Gymnotiformes: Gymnotidae) 电鱼(刀鱼)裸子的异染色质组成及性质(裸子目:裸子科)
Pub Date : 2021-05-07 DOI: 10.5772/INTECHOPEN.97673
M. Silva, D. Matoso, V. P. Margarido, E. Feldberg, R. Artoni
Fishes of the genus Gymnotus have been suggested as a good model for biogeographic studies in the South American continent. In relation to heterochromatin, species of this genus have blocks preferably distributed in the centromeric region. The content of these regions has been shown to be variable, with description of transposable elements, pseudogenes of 5S rDNA and satellite sequences. In G. carapo Clade, although geographically separated, species with 2n = 54 chromosomes share the distribution of many 5S rDNA sites, a unique case within the genus. Here, repetitive DNA sequences from G. sylvius (2n = 40) and G. paraguensis (2n = 54) were isolated and mapped to understand their constitution. The chromosome mapping by FISH showed an exclusive association in the centromeres of all chromosomes. However, the cross-FISH did not show positive signs of interspecific hybridization, indicating high levels of heterochromatic sequence specificity. In addition, COI-1 sequences were analyzed in some species of Gymnotus, which revealed a close relationship between species of clade 2n = 54, which have multiple 5S rDNA sites. Possibly, the insertion of retroelements or pseudogenization and dispersion of this sequence occurred before the geographic dispersion of the ancestor of this clade from the Amazon region to the hydrographic systems of Paraná-Paraguay, a synapomorphy for the group.
Gymnotus属的鱼类被认为是南美大陆生物地理研究的一个很好的模型。关于异染色质,本属的物种有块优选分布在着丝粒区。这些区域的内容是可变的,描述了转座元件,5S rDNA的假基因和卫星序列。在G. carapo Clade中,尽管地理上是分开的,但具有2n = 54条染色体的物种共享许多5S rDNA位点的分布,这在属中是独特的。本研究分离了G. sylvius (2n = 40)和G. paraguensis (2n = 54)的重复DNA序列,并对其结构进行了定位。FISH的染色体定位显示,所有染色体的着丝粒都具有排他性关联。然而,交叉fish没有显示出种间杂交的阳性迹象,表明高水平的异色序列特异性。此外,对部分裸子属物种的COI-1序列进行了分析,结果表明2n = 54支系物种之间存在密切的亲缘关系,具有多个5S rDNA位点。可能,在该分支的祖先从亚马逊地区分散到Paraná-Paraguay的水文系统之前,该序列的插入或假原化和分散就发生了,Paraná-Paraguay是该分支的一个突触形态。
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引用次数: 0
Haematological Malignancies: Overview of the Recent Progresses in Genetics 血液系统恶性肿瘤:遗传学最新进展综述
Pub Date : 2021-05-05 DOI: 10.5772/INTECHOPEN.96913
M. Bendari, S. Sraidi, N. Khoubila
Genetic defects play a major role in pathogenesis of the most of haematological malignancies, including cytogenetic abnormalities, gene mutations, and abnormal gene expression. Our knowledge about the genetics of haematological disorders has been dramatically improved during the past decade, due to revolution of sequencing technologies which have played a crucial role. In this chapter, we describe the techniques commonly employed for elucidating chromosomal aberrations, prognostic impact of recurrent chromosomal abnormalities, and recently updated risk stratification systems. We will summarise the chromosomal abnormalities recently identified on many of haematological diseases such acute myeloid leukaemia, acute lymphoid leukaemia, myelodysplasic syndrome, multiple myeloma, meyloproliferative disease and clarify their impacts on clinical phenotype and prognosis, as well as their role in the pathogenesis of these diseases. The aim of this chapter is to provide a brief overview of the recent progresses in haematological diseases genetics.
遗传缺陷在大多数血液系统恶性肿瘤的发病机制中起着重要作用,包括细胞遗传学异常、基因突变和基因表达异常。在过去十年中,由于测序技术的革命发挥了至关重要的作用,我们对血液病遗传学的认识得到了极大的提高。在本章中,我们描述了通常用于阐明染色体畸变的技术,复发性染色体异常的预后影响,以及最近更新的风险分层系统。我们将总结最近在许多血液学疾病中发现的染色体异常,如急性髓性白血病、急性淋巴性白血病、骨髓增生异常综合征、多发性骨髓瘤、骨髓增生性疾病,并阐明它们对临床表型和预后的影响,以及它们在这些疾病的发病机制中的作用。本章的目的是简要概述血液病遗传学的最新进展。
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引用次数: 0
Cytogenetic and Genetic Advances in Myelodysplasia Syndromes 骨髓增生异常综合征的细胞遗传学和遗传学进展
Pub Date : 2021-04-28 DOI: 10.5772/INTECHOPEN.97112
M. Bendari, N. Khoubila
Myelodysplasia syndromes (MDS) are defined by a heterogeneous group of myeloid malignancies characterized by peripheral blood cytopenia and dishematopoiesis and frequently progress to acute myeloid leukemia. Conventional karyotype has a crucial role in myelodysplastic syndrome (MDS) and is one of items of the International Prognostic Scoring System (IPSS) for patient risk stratification and treatment selection. Approximately 50–60% of cases of MDS present chromosomal abnormalities, like the deletions of chromosome 5q and 7q, trisomy 8, and complex karyotypes. New genomic technologies have been developted, like single-nucleotide polymorphism array and next-generation sequencing. They can identify the heterozygous deletions wich result in haplo-insufficient gene expression (e.g., CSNK1A1, DDX41 on chromosome 5, CUX1, LUC7L2, EZH2 on chromosome 7) involved in the pathogenesis of myelodysplasia syndromes. Genetic abnormalities are multiple, the most recurrent one are involved in the RNA splicing like SF3B1, SRSF2, U2AF1, ZRSR2, LUC7L2, and DDX41. Epigenetic modifications are also identified, such as histone modification as ASXL1, EZH2. Finally, it can be DNA methylation (e.g., TET2, DNMT3A, IDH1/IDH2). On this review we will summarize the most recent progress in molecular pathogenesis of MDS, and try to better understand the pathogenesis of the specific subgroups of MDS patients and applications of discovery of new genetic mutation in the development of new therapeutic.
骨髓增生异常综合征(MDS)是一种异质性的髓系恶性肿瘤,以外周血细胞减少和造血功能障碍为特征,经常进展为急性髓系白血病。常规核型在骨髓增生异常综合征(MDS)中起着至关重要的作用,是国际预后评分系统(IPSS)患者风险分层和治疗选择的项目之一。大约50-60%的MDS病例存在染色体异常,如5q和7q染色体缺失,8三体和复杂的核型。新的基因组技术得到了发展,如单核苷酸多态性阵列和下一代测序。他们可以识别出导致单倍基因表达不足的杂合缺失(例如,5号染色体上的CSNK1A1, DDX41, 7号染色体上的CUX1, LUC7L2, EZH2)参与骨髓发育不良综合征的发病机制。遗传异常是多种多样的,最常见的与RNA剪接有关,如SF3B1、SRSF2、U2AF1、ZRSR2、LUC7L2、DDX41等。表观遗传修饰也被发现,如组蛋白修饰如ASXL1, EZH2。最后,它可以是DNA甲基化(例如,TET2, DNMT3A, IDH1/IDH2)。本文将对MDS的分子发病机制的最新进展进行综述,以期更好地了解MDS患者特定亚群的发病机制以及发现新的基因突变在开发新的治疗方法中的应用。
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引用次数: 1
Genome Modifications Involved in Developmental Programs of the Placental Trophoblast 胎盘滋养细胞发育过程中的基因组修饰
Pub Date : 2021-04-21 DOI: 10.5772/INTECHOPEN.97247
T. Zybina
The placental trophoblast cells give an example of profound genome modifications that lead to whole-genome multiplication, aneuploidy, under-replication of some genes or their clusters as well as, by contrast, gene amplification. These events are included into program of differentiation of functionally different cell lineages. In some cases the trophoblast cell differentiation involves depolyploidization achieved by non-mitotic division. Aneuploidy may be also accounted for by the unusual mitoses characteristic of Invertebrates and plants; in mammalian it may result from hypomethylation of centromere chromosome regions. The giant (endopolyploid) trophoblast cells organization includes “loose nucleosomes” accounted for by the non-canonical histone variants, i.e. H2AX, H2AZ, and H3. 3 . In the human extravillous trophoblast cells that, like murine TGC, invade endometrium, there occured significant changes of methylation as compared to non-invasive trophoblast cell populations . Meantime, some genes show hypermethylation connected with start of trophoblast lineages specification. Thus, despite the limited possibilities of chromosome visualization trophoblast cells represent an interesting model to investigate the role of modification of gene copy number and their expression that is important for the normal or abnormal cell differentiation.
胎盘滋养层细胞提供了一个深刻的基因组修饰的例子,导致全基因组增殖,非整倍性,一些基因或其簇的复制不足,以及相反,基因扩增。这些事件包括在功能不同的细胞系分化程序中。在某些情况下,滋养细胞分化包括通过非有丝分裂实现的去多倍体化。非整倍性也可以由无脊椎动物和植物不寻常的有丝分裂特征来解释;在哺乳动物中,它可能是由着丝粒染色体区域的低甲基化引起的。巨型(内多倍体)滋养细胞组织包括“松散核小体”,由非规范组蛋白变体,即H2AX, H2AZ和H3组成。3.与小鼠TGC一样,侵入子宫内膜的人上皮外滋养细胞中,与非侵入性滋养细胞群体相比,甲基化发生了显著变化。与此同时,一些基因在滋养细胞谱系分化开始时出现了高甲基化。因此,尽管染色体可视化的可能性有限,但滋养细胞代表了一个有趣的模型来研究基因拷贝数的修饰及其表达对正常或异常细胞分化的重要作用。
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引用次数: 5
Genetic Abnormalities in ALL ALL的遗传异常
Pub Date : 2021-04-19 DOI: 10.5772/INTECHOPEN.97429
Bendari Mounia, S. Sraidi, N. Khoubila
Acute lymphoblastic leukemia (ALL), can be defined by a family of genetically heterogeneous lymphoid neoplasms derived from B- and T-lymphoid progenitors. ALL constitutes the most common childhood cancer, due to an overproduction of immature lymphoid hematopoietic cells. Genetic analyzes currently provides important information for classifying patients into prognostic groups, genetic analysis also helps to understand the mechanisms of relapse, pharmacogenetics and the development of new potential therapeutic targets, which should help to further improve the results of leukemia. In fact, the new techniques in molecular cytogenetic permits to identify new cryptic abnormalities, these discoveries have led to the development of new therapeutic protocols. The role of cytogenetic analysis is crucial on ALL patient’s management. Karyotyping coupled with FISH analysis identifies recurrent chromosomal abnormalities in ALL, many of these abnormalities have prognostic and treatment impact. This chapter summarizes chromosomal abnormalities that are common and classify ALL according to the World Health Organization (WHO) classifications (2016 revision). We will present the main genetic modifications recently identified as well as the sequence mutations which have helped in the elucidation of the pathogenesis of ALL.
急性淋巴细胞白血病(Acute lymphoblastic leukemia, ALL)是一种起源于B淋巴细胞和t淋巴细胞祖细胞的遗传异质性淋巴肿瘤家族。ALL是最常见的儿童癌症,由于未成熟的淋巴造血细胞产生过多。遗传分析目前为患者预后分类提供了重要信息,遗传分析还有助于了解复发机制、药物遗传学和开发新的潜在治疗靶点,这将有助于进一步改善白血病的治疗结果。事实上,分子细胞遗传学的新技术允许识别新的隐性异常,这些发现导致了新的治疗方案的发展。细胞遗传学分析的作用是至关重要的ALL患者的管理。核型分析结合FISH分析确定ALL复发性染色体异常,其中许多异常对预后和治疗有影响。本章总结了常见的染色体异常,并根据世界卫生组织(WHO)分类(2016年修订)对ALL进行了分类。我们将介绍最近发现的主要遗传修饰以及序列突变,这些突变有助于阐明ALL的发病机制。
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引用次数: 0
Chromosome Banding and Mechanism of Chromosome Aberrations 染色体显带与染色体畸变机制
Pub Date : 2021-02-17 DOI: 10.5772/INTECHOPEN.96242
Sanjay Kumar, Asikho Kiso, N. A. Kithan
Chromosome identification depends on the morphological features of the chromosome and therefore karyotype and its banding pattern analyses are the most suitable technique to identify each and every chromosome of a chromosome complement. Moreover, aberrations caused by breaks play an important role in the evolution of a chromosome set and chromosome complement by decreasing or increasing the chromosome number. Therefore, both the aspects are discussed in detail in the present chapter. At present, the chapter will highlight the karyotype and its components, karyotype trends, evolution and its role in speciation, banding pattern and techniques, chromosome differentiation and linearization, banding applications and their uses, detection and analysis of chromosomal aberrations, chromosome and chromatid types of aberrations and mechanism of the formation of chromosome aberrations and breaks for karyotype evolutionary trends.
染色体鉴定依赖于染色体的形态特征,因此核型及其带型分析是鉴定染色体补体中每一条染色体最合适的技术。此外,断裂引起的畸变通过减少或增加染色体数目,在染色体组和染色体补体的进化中起着重要作用。因此,本章将对这两个方面进行详细讨论。目前,本章将重点介绍核型及其组成,核型趋势,进化及其在物种形成中的作用,带型模式和技术,染色体分化和线性化,带型应用及其用途,染色体畸变的检测和分析,染色体和染色单体畸变的类型以及染色体畸变和断裂的形成机制。
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引用次数: 1
Research of the Philadelphia Chromosome in Chronic Myeloid Leukemia: Diagnostic and Prognostic Interests 慢性髓系白血病费城染色体的研究:诊断和预后的利益
Pub Date : 2021-02-04 DOI: 10.5772/INTECHOPEN.95865
Yahya Benbouchta, Ahmed Afailal Tribak, K. Sadki
Myeloproliferative syndromes are cell proliferation involving one or more medullary lines without blocking maturation. Chronic myeloid leukemia (CML) is the most common of these syndromes, it corresponds to the monoclonal proliferation of a multipotent stem cell; the myeloblastic or lymphoblastic transformation of CM. has a poor prognosis. The Philadelphia chromosome t(9;22)(q34;q11) is the first cytogenetic abnormality that has been associated with a malignant process. It is found in 89 to 95% of CML. The search for the Philadelphia chromosome (Ph1) has multiple interests: Diagnostic, prognostic and in therapeutic monitoring. The search for the Philadelphia chromosome by molecular cytogenetics makes it possible to remedy the poverty of cell suspensions in metaphase to take up the inconclusive results of classic cytogenetics on nuclei in interphase and to detect residual disease during therapeutic monitoring. Through the literature review, we highlight the importance of the identification of the Philadelphia chromosome in Myeloproliferative Syndromes for the improvement of the quality healthcare of the affected patients.
骨髓增生性综合征是细胞增殖累及一条或多条髓系而不阻碍成熟。慢性髓系白血病(CML)是这些综合征中最常见的,它对应于多能干细胞的单克隆增殖;骨髓母细胞或淋巴母细胞转化。预后不良。费城染色体t(9;22)(q34;q11)是第一个与恶性过程相关的细胞遗传学异常。它存在于89 - 95%的CML中。寻找费城染色体(Ph1)具有多方面的意义:诊断、预后和治疗监测。通过分子细胞遗传学寻找费城染色体,可以弥补中期细胞悬液的不足,弥补经典细胞遗传学对间期细胞核的不确定结果,并在治疗监测中发现残留疾病。通过文献综述,我们强调在骨髓增生性综合征中鉴定费城染色体对提高患者的医疗质量的重要性。
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引用次数: 0
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Cytogenetics - Classical and Molecular Strategies for Analysing Heredity Material
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