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Pioneering QSAR Modeling Study of FAP-Targeting Radiopharmaceuticals Used in Oncology 肿瘤用fap靶向放射性药物的QSAR建模研究
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1111/cbdd.70177
Dorrin Fatehi, Zahra Hajimahdi, Mona Mosayebnia

Fibroblast Activation Protein (FAP) is highly expressed in the tumor microenvironment, promoting cancer growth and spread. FAP inhibitors (FAPIs) labeled with radionuclides are increasingly used for cancer diagnosis and therapy. The present study aims to explore how structural features relate to the inhibitory action of radiopharmaceuticals, representing a novel approach in the field of radiopharmacy. The 2D-QSAR using multiple linear regression analysis via the stepwise variable selection method showed promising results for both internal and external predictive ability of the model (R2train = 0.877, Q2LOO = 0.830, pred_R2 = 0.740). This analysis based on the genetic algorithm was also robust (R2train = 0.846, Q2LOO = 0.768, pred_R2 = 0.608). A 3D-QSAR model using partial least squares analysis showed better parametric results for CoMFA descriptors (R2 = 0.988, Q2LOO = 0.518 and pred_R2 = 0.642) than the CoMSIA model as well. Our findings revealed that the steric, hydrophobic, and hydrogen-bonding properties notably impact the pIC50 values of FAPI radiopharmaceuticals. Based on virtual screening on the FDA-approved drugs, 23 potential inhibitors of the FAP enzyme were identified. To the best of our knowledge, this is the first QSAR study on radiopharmaceuticals with FAP inhibitory action, the results of which can be helpful in designing more potent ones.

成纤维细胞激活蛋白(FAP)在肿瘤微环境中高表达,促进肿瘤生长和扩散。放射性核素标记的FAP抑制剂(FAPIs)越来越多地用于癌症的诊断和治疗。本研究旨在探讨结构特征与放射性药物抑制作用的关系,代表了放射药理学领域的新方法。通过逐步变量选择法进行多元线性回归分析的2D-QSAR对模型的内部和外部预测能力均有良好的结果(R2 train = 0.877, Q2 LOO = 0.830, pred_R2 = 0.740)。基于遗传算法的分析同样具有鲁棒性(R2 train = 0.846, Q2 LOO = 0.768, pred_R2 = 0.608)。采用偏最小二乘分析的3D-QSAR模型对CoMFA描述符的参数化结果(R2 = 0.988, Q2 LOO = 0.518, pred_R2 = 0.642)也优于CoMSIA模型。我们的研究结果表明,空间、疏水和氢键性质显著影响FAPI放射性药物的pIC50值。基于对fda批准的药物的虚拟筛选,确定了23种潜在的FAP酶抑制剂。据我们所知,这是第一次对具有FAP抑制作用的放射性药物进行QSAR研究,其结果可以帮助设计更有效的药物。
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引用次数: 0
Antioxidant and Amylase, Glucosidase, and Tyrosinase Enzymes Inhibitory Potential of Genistein and 11-α-Hydroxyerysotrine Supported by In Silico and Network Pharmacology Approaches 染料木素和11-α-羟基赤藓碱的抗氧化和淀粉酶、葡萄糖苷酶、酪氨酸酶抑制潜力:基于计算机和网络药理学方法的支持
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1111/cbdd.70175
Nouran M. Fahmy, Shaimaa Fayez, Gokhan Zengin, Abdullahi Ibrahim Uba, Eman Al-Sayed, Mohamed El-Shazly, Omayma A. Eldahshan, Abdel Nasser Singab

The antioxidant and enzyme inhibition properties of the isoflavone genistein (1) and the alkaloid 11-α-hydroxyerysotrine (2) isolated from the leaves of Erythrina speciosa were assessed. Both compounds exhibited notable in vitro antioxidant activities; 11-α-hydroxyerysotrine (2) demonstrated stronger effects than genistein in DPPH, ABTS, CUPRAC, and FRAP assays. On the other hand, genistein (1) demonstrated a higher metal chelating activity than 11-α-hydroxyerysotrine (2). Regarding enzyme inhibition, 11-α-hydroxyerysotrine (2) inhibited both acetyl- (AchE) and butyryl- (BchE) cholinesterases, though to a lesser extent than the standard drug galanthamine. Both compounds inhibited tyrosinase, yet a good inhibition was observed for 11-α-hydroxyerysotrine (2) as compared to genistein (1). Genistein (1) showed a lower α-amylase inhibition effect (IC50: 3.43 mg/mL, p < 0.05) compared to the standard acarbose (IC50: 0.80 mg/mL). Regarding α-glucosidase inhibition, genistein (1) (IC50: 1.02 mg/mL, p < 0.05) was more active than acarbose (IC50: 1.78 mg/mL). 11-α-Hydroxyerysotrine (2) exhibited lower α-amylase (IC50: 4.09 mg/mL) and α-glucosidase (IC50: 4.48 mg/mL) inhibition effects. The in vitro biological results were further supported by network pharmacology approaches on Alzheimer's disease and in silico studies performed on AChE, BChE, tyrosinase, α-amylase, and β-glucosidase enzymes. The results of our study suggest 11-α-hydroxyerysotrine as a potential drug candidate for further investigation in managing oxidative stress-related conditions, Alzheimer's disease, and hyperpigmentation disorders.

对从赤藓(Erythrina speciosa)叶中分离得到的异黄酮染料木素(1)和生物碱11-α-羟基赤藓碱(2)的抗氧化和酶抑制性能进行了评价。两种化合物均表现出显著的体外抗氧化活性;在DPPH、ABTS、CUPRAC和FRAP检测中,11-α-羟基红异杉碱(2)的作用强于染料木素。另一方面,染料木素(1)的金属螯合活性高于11-α-羟基赤藓碱(2)。在酶抑制方面,11-α-羟基赤曲碱(2)对乙酰- (AchE)和丁基- (BchE)胆碱酯酶均有抑制作用,但抑制程度低于标准药物加兰他敏。两种化合物都抑制酪氨酸酶,但与染料木素(1)相比,对11-α-羟基赤藓碱(2)的抑制作用较好。染料木素(1)对α-淀粉酶的抑制作用较低(IC50: 3.43 mg/mL, p50: 0.80 mg/mL)。对于α-葡萄糖苷酶的抑制作用,染料木素(1)(IC50: 1.02 mg/mL, p50: 1.78 mg/mL)。11-α-羟基赤藓碱(2)对α-淀粉酶(IC50: 4.09 mg/mL)和α-葡萄糖苷酶(IC50: 4.48 mg/mL)的抑制作用较低。阿尔茨海默病的网络药理学方法和对AChE、BChE、酪氨酸酶、α-淀粉酶和β-葡萄糖苷酶的计算机研究进一步支持了体外生物学结果。我们的研究结果表明,11-α-羟基赤藓碱是一种潜在的候选药物,可以进一步研究其在治疗氧化应激相关疾病、阿尔茨海默病和色素沉着症方面的作用。
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引用次数: 0
Unveiling a New Cholinesterase Inhibitor Iridoid From Verbascum uschakense (Murb.) Hub.-Mor.: In Vitro and In Silico Evaluation 从水草中提取新的胆碱酯酶抑制剂环烯醚酮Hub.-Mor。:体外和计算机评价。
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1111/cbdd.70178
Rabia Sena Mındız, Gülaçtı Topçu, Didem Şöhretoğlu, Suat Sari, Mehmet Ufuk Özbek, Çiğdem Kahraman

Verbascum L., a member of the Scrophulariaceae family, is the second-largest genus in Turkish flora. It is represented by over 250 species, many of which have been used as folk medicine. This study aims to determine the cholinesterase inhibitory potential of secondary metabolites of Verbascum uschakense (Murb.) Hub.-Mor, an endemic species to Türkiye that has not been studied phytochemically before. Gluroside, an iridoid glucoside, was isolated from V. uschakense through acetylcholinesterase (AChE) inhibitory activity-guided fractionation alongside four other iridoid glucosides: ajugol, harpagide, aucubin, and catalpol. Additionally, three phenylethanoid glycosides—verbascoside, martinoside, and forsythoside B—were isolated from the antioxidant fractions evaluated using DPPH radical scavenging activity. Gluroside emerged as the most active compound against butyrylcholinesterase (BChE) with an IC50 of 2.5 ± 0.02 μg/mL, exhibiting selectivity over AChE (37.69% inhibition at 200 μg/mL). Molecular modeling predicted strong electrostatic interactions between the glucosides and the catalytic residues of BChE. This is the first report of the isolation of gluroside from a Verbascum species and its cholinesterase inhibitory activity, underpinning the importance of V. uschakense and its secondary metabolites as a new class of cholinesterase inhibitors.

Verbascum L.是玄参科的一员,是土耳其植物区系的第二大属。它有250多个品种,其中许多已被用作民间药物。本研究旨在测定毛蕊草(Verbascum uschakense)次生代谢产物的胆碱酯酶抑制电位。中心。-Mor,一种以前未被植物化学研究过的基耶病特有种。通过乙酰胆碱酯酶(AChE)抑制活性引导分离,从uschakense V.中分离出一种环烯醚萜苷,与其他四种环烯醚萜苷:阿jugol, harpagide, aucubin和catalpol。此外,从抗氧化组分中分离出三种苯乙醇苷-毛蕊花苷、马齿苋苷和连翘苷b -,并用DPPH自由基清除活性进行评估。结果表明,葡萄糖苷对乙酰胆碱酯酶(BChE)的抑制活性最高,IC50为2.5±0.02 μg/mL,对乙酰胆碱酯酶(AChE)具有选择性(200 μg/mL抑制率为37.69%)。分子模型预测了糖苷与BChE催化残基之间的强静电相互作用。这是首次报道从一种草属植物中分离到葡萄糖苷及其抑制胆碱酯酶的活性,支持了V. uschakense及其次生代谢物作为一类新的胆碱酯酶抑制剂的重要性。
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引用次数: 0
Procyanidin Alleviates Diabetic Retinopathy by Activating the Expression of Activating Transcription Factor 1 Expression to Upregulate Synoviolin 1 and Inhibit the High Mobility Group Box 1/Toll-Like Receptor 4 Pathway 原花青素通过激活转录因子1表达上调滑膜拉琴1和抑制高迁移率组盒1/ toll样受体4通路缓解糖尿病视网膜病变
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-27 DOI: 10.1111/cbdd.70174
Limin Zheng, Yaodan Cao, Wuyun Lu, Jinqi Hao, Yanqin Yu, Songtao Yuan

Diabetic retinopathy (DR) remains a major cause of vision loss among working-age individuals, significantly impairing quality of life in diabetic patients. While no definitive cure exists, Procyanidin (PRO), a polyphenolic compound, has shown potential in mitigating diabetes-related complications. However, its mechanism of action in DR remains poorly understood. To explore this, we established an in vitro high glucose (HG) model using human retinal microvascular endothelial cells (hRMECs) and an in vivo diabetic rat model. Cells were cultured in normal glucose (NG, 5 mM) or HG (30 mM) for 48 h, followed by PRO treatment. Techniques including qRT-PCR, Western blotting, flow cytometry, histological staining, Transwell, tube formation, chromatin immunoprecipitation (ChIP), and dual-luciferase assays were employed. PRO treatment conferred protection against DR; however, this effect was reversed upon knockdown of activating transcription factor 1 (ATF1). Mechanistically, ATF1 enhanced transcription of synoviolin 1 (SYVN1), promoting HMGB1 degradation via ubiquitination and suppressing the HMGB1/toll-like receptor 4 (TLR4) signaling pathway. Findings from the in vitro model were validated in vivo. In conclusion, PRO alleviates DR by regulating the ATF1/SYVN1/HMGB1 axis and inhibiting pro-inflammatory signaling. These results provide novel insights into the molecular mechanism of PRO's protective role in DR and support its therapeutic potential.

糖尿病视网膜病变(DR)仍然是工作年龄人群视力丧失的主要原因,严重影响糖尿病患者的生活质量。虽然没有明确的治疗方法,原花青素(PRO),一种多酚化合物,已经显示出减轻糖尿病相关并发症的潜力。然而,其在DR中的作用机制仍然知之甚少。为此,我们利用人视网膜微血管内皮细胞(hRMECs)建立了体外高糖模型和体内糖尿病大鼠模型。细胞在正常葡萄糖(NG, 5 mM)或HG (30 mM)中培养48 h,然后进行PRO处理。采用qRT-PCR、Western blotting、流式细胞术、组织学染色、Transwell、试管形成、染色质免疫沉淀(ChIP)和双荧光素酶测定等技术。PRO治疗可预防DR;然而,当激活转录因子1 (ATF1)被敲低时,这种作用被逆转。从机制上讲,ATF1增强了SYVN1的转录,通过泛素化促进HMGB1的降解,并抑制HMGB1/toll样受体4 (TLR4)信号通路。体外模型的结果在体内得到了验证。综上所述,PRO通过调节ATF1/SYVN1/HMGB1轴和抑制促炎信号传导来缓解DR。这些结果为PRO在DR中的保护作用的分子机制提供了新的见解,并支持其治疗潜力。
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引用次数: 0
Beyond ATP Synthase Inhibition: Chemical Diversification, Bioactivities, and Therapeutic Potential of Oligomycin A 超越ATP合成酶抑制:寡霉素A的化学多样化、生物活性和治疗潜力
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-27 DOI: 10.1111/cbdd.70173
Mohamed S. Nafie, Muna A. Alshams, Mohamed K. Diab, Heba F. Ashour, Asmaa S. A. Yassen

Oligomycin A, initially identified as a macrolide antibiotic and a mitochondrial ATP synthase inhibitor, has recently transitioned from a laboratory tool to a multifaceted agent with promising therapeutic and industrial applications. Its irreversible inhibition of the F0 subunit interrupts ATP synthesis and informs about metabolic susceptibilities in neoplastic cells, such as the Warburg effect and reversal of multidrug resistance by P-glycoprotein inhibition. Guided by structural studies of its interaction with the c10-ring of ATP synthase, analogs like bedaquiline were rationally designed as antibacterial candidates, and the analog spiropiperidine derivatives were inspired by improving ischemia–reperfusion injury. Although this derivative has great potential, clinical translation is limited by systemic toxicity, poor solubility, and environmental persistence. Emerging approaches like PEGylation and combination therapies (e.g., with docetaxel) have started to address selectivity and off-target effects. There are still challenges in balancing efficacy, safety, and environmental impact. This review summarizes the current knowledge and mechanisms of action of oligomycin A and its derivatives that should be of interest in the design of bioactive agents with potential therapeutic applications. This is intended to serve as a motivator for moving forward with future research avenues toward optimizing Oligomycin A-based therapeutics to derive as much of the potential benefit as possible while mitigating the harms associated.

Oligomycin A最初被鉴定为大环内酯类抗生素和线粒体ATP合成酶抑制剂,最近已从实验室工具转变为具有治疗和工业应用前景的多方面药物。它对F0亚基的不可逆抑制阻断ATP合成,并告知肿瘤细胞的代谢敏感性,如Warburg效应和通过p -糖蛋白抑制逆转多药耐药。在对其与ATP合酶c10环相互作用的结构研究的指导下,合理设计贝达喹啉等类似物作为抗菌候选物,并从改善缺血-再灌注损伤的角度启发类似物螺旋体哌啶衍生物。虽然这种衍生物有很大的潜力,但临床转化受到全身毒性、溶解度差和环境持久性的限制。新兴的方法,如聚乙二醇化和联合治疗(例如,与多西他赛)已经开始解决选择性和脱靶效应。在平衡疗效、安全性和环境影响方面仍然存在挑战。本文综述了目前对寡霉素A及其衍生物的认识和作用机制,对设计具有潜在治疗应用价值的生物活性药物有重要意义。这是为了推动未来的研究途径,以优化基于寡霉素的治疗方法,以获得尽可能多的潜在益处,同时减轻相关危害。
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引用次数: 0
Kisspeptin-10 Improves Gestational Diabetes Mellitus Symptoms in Rats by Suppressing Insulin Resistance in Placental Trophoblast Cells by Activating the Cyclic AMP/Protein Kinase A Pathway Kisspeptin-10通过激活环AMP/蛋白激酶A通路抑制胎盘滋养细胞胰岛素抵抗改善妊娠糖尿病大鼠症状
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-13 DOI: 10.1111/cbdd.70169
Jianhua Li, Jinhuan Chen, Lin Lu, Bei Gan

Gestational diabetes mellitus (GDM) is a common pregnancy complication that leads to insulin resistance (IR) and adversely affects both maternal and fetal health. Kisspeptin-10 (Kp-10), a peptide acting via G Protein-Coupled Receptor 54 (Gpr54), has shown potential in modulating insulin secretion, but its role in GDM remains unclear. This study explores Kp-10's therapeutic effects on GDM by targeting IR in placental tissues. We used GDM rat models (induced by a high-fat diet and streptozotocin) and high-glucose-treated HTR8/SVneo trophoblast cells to investigate Kp-10's effects on glucose metabolism, insulin signaling, and the cAMP/PKA pathway. Our results show that Gpr54 expression was significantly downregulated in the placental tissues of GDM rats, which was associated with impaired glucose uptake and IR. Kp-10 treatment improved fasting blood glucose (FBG) levels, insulin sensitivity, and fetal outcomes, including increased fetal weight and decreased fetal blood glucose. Moreover, Kp-10 restored the cyclic adenosine monophosphate (cAMP)/protein kinase A (PKA) signaling pathway and enhanced glucose uptake by upregulating Glut-4, Insr, and Irs1 expression in both placental tissues and HTR8/SVneo cells. The effects of Kp-10 were reversed by the cAMP inhibitor SQ22536, confirming the involvement of the cAMP/PKA pathway in its anti-IR effects. Our findings suggest that Kp-10 has the potential as a therapeutic agent for alleviating IR in GDM and improving maternal–fetal outcomes.

妊娠期糖尿病(GDM)是一种常见的妊娠并发症,可导致胰岛素抵抗(IR)并对母体和胎儿健康产生不利影响。Kisspeptin-10 (Kp-10)是一种通过G蛋白偶联受体54 (Gpr54)起作用的肽,已显示出调节胰岛素分泌的潜力,但其在GDM中的作用尚不清楚。本研究探讨了Kp-10通过靶向胎盘组织IR对GDM的治疗作用。我们使用GDM大鼠模型(高脂肪饮食和链脲佐菌素诱导)和高糖处理的HTR8/SVneo滋养细胞来研究Kp-10对葡萄糖代谢、胰岛素信号和cAMP/PKA通路的影响。我们的研究结果表明Gpr54在GDM大鼠胎盘组织中表达显著下调,这与葡萄糖摄取和IR受损有关。Kp-10治疗改善了空腹血糖(FBG)水平、胰岛素敏感性和胎儿结局,包括胎儿体重增加和胎儿血糖降低。此外,Kp-10通过上调胎盘组织和HTR8/SVneo细胞中Glut-4、Insr和Irs1的表达,恢复环磷酸腺苷(cAMP)/蛋白激酶A (PKA)信号通路,增强葡萄糖摄取。cAMP抑制剂SQ22536可逆转Kp-10的作用,证实cAMP/PKA通路参与其抗ir作用。我们的研究结果表明,Kp-10具有作为缓解GDM中IR和改善母胎结局的治疗药物的潜力。
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引用次数: 0
A Covalent and Modulable Inhibitor of the Tubulin-Microtubule System: Insights Into the Mechanism of Cacalol 微管-微管系统的共价可调节抑制剂:Cacalol的机制
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-11 DOI: 10.1111/cbdd.70165
Edgar López-López, José L. Medina-Franco, Eric Salinas-Arellano, Karen J. Ardila-Fierro, Julio C. Pardo-Novoa, Rosa E. del Río, Carlos M. Cerda-García-Rojas

Inhibitors of the tubulin-microtubule system are part of an effective strategy to treat different kinds of cancer, whose research has allowed scientists to discover and develop new and more selective molecules. Cacalol (1) is a natural product with anti-cancer activity and documented selectivity in breast cells, but with an undescribed molecular mechanism associated with these properties. The main objective of this work is to provide evidence that helps to explain the inhibitory and selective activity reported for cacalol (1) against cancer cell lines and to expand the knowledge about the mechanism of action involved in it. Cacalol derivatives were studied using reactivity approaches, tubulin polymerization assays, mass spectrometry, and molecular modeling techniques to decode the inhibitory binding mechanism. This work demonstrates that an oxidated form of cacalol, the methylenecyclohexadienone 2, is generated in highly oxidant conditions, thus emulating the environment present in cancer cells. This species (2) is responsible for the inhibition of tubulin polymerization by promoting an irreversible binding interaction with the Cys347 in α-tubulin.

微管蛋白-微管系统的抑制剂是治疗不同类型癌症的有效策略的一部分,其研究使科学家能够发现和开发新的更具选择性的分子。Cacalol(1)是一种具有抗癌活性的天然产物,在乳腺细胞中具有选择性,但与这些特性相关的分子机制尚未描述。这项工作的主要目的是提供证据,帮助解释cacalol(1)对癌细胞系的抑制和选择活性,并扩大对其作用机制的了解。利用反应性方法、微管蛋白聚合测定、质谱分析和分子建模技术研究了钙酚衍生物,以解码抑制结合机制。这项工作表明,在高度氧化的条件下会产生一种氧化形式的钙酚,即亚甲基环己二烯酮2,从而模拟癌细胞中存在的环境。该物种(2)通过促进与α-微管蛋白中的Cys347的不可逆结合相互作用来抑制微管蛋白聚合。
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引用次数: 0
Rationally Designed InhA Inhibitors: A Comparative Anti-Tubercular Activity Study of Sulfonate Esters of Isoniazid Hydrazones and Their Structurally Flexible Benzyl Analogues 合理设计的InhA抑制剂:异烟肼磺酸酯及其结构柔性苯类似物抗结核活性的比较研究
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-10 DOI: 10.1111/cbdd.70171
Mukanda Gedeon Kadima, Sahil Mishra, Gobind Kumar, Pule Seboletswe, Françoise Roquet-Banères, Maëlle Foubert, Laurent Kremer, Rajshekhar Karpoormath, Parvesh Singh

Molecular hybridization of isoniazid with hydrophobic aromatic moieties represents a promising strategy for the development of novel anti-tubercular therapeutics. In this study, a series of hybrid molecules (5a–i) was synthesized by linking isoniazid with aromatic sulfonate esters via a hydrazone bridge. Molecular docking studies revealed that these compounds interact effectively with the catalytic triad of the InhA enzyme (Y158, F149, and K165), suggesting their potential as InhA inhibitors. To enhance molecular flexibility and improve binding interactions with both NADH and the catalytic residues, a second generation of derivatives (8a–k) was designed and synthesized. All synthesized compounds were structurally characterized using spectroscopic techniques, including nuclear magnetic resonance (NMR), Fourier transform infrared spectroscopy (IR), and high-resolution mass spectrometry. As anticipated, these new compounds exhibited enhanced anti-tubercular activity compared to their precursors. Notably, compound 8b demonstrated significant potency with an MIC of 0.078 μg/mL, approximately twofold more active than its precursor 5b (MIC = 0.156 μg/mL) against Mycobacterium tuberculosis (Mtb). However, both generations of compounds (e.g., 5a, 5b, 8a, 8b, 8c, and 8 k) lost activity against INH-resistant Mtb strains harboring katG mutations. Importantly, no cytotoxicity was observed for these compounds in THP-1 human monocytic cells at a concentration of 10 μg/mL. The structural integrity of the lead compound 8b was confirmed via 1H NMR stability studies. The ADME/T parameters (absorption, distribution, metabolism, excretion, and toxicity) were also explored to determine their drug likeness and safety profile. Collectively, these hybrid molecules present valuable scaffolds for further optimization in the pursuit of new anti-tubercular agents.

异烟肼与疏水芳香基团的分子杂交是开发新型抗结核药物的一个有前途的策略。本研究通过腙桥接异烟肼与芳香磺酸酯,合成了一系列杂化分子5a-i。分子对接研究表明,这些化合物与InhA酶的催化三元体(Y158, F149和K165)有效相互作用,表明它们具有作为InhA抑制剂的潜力。为了增强分子柔韧性,改善与NADH和催化残基的结合相互作用,设计并合成了第二代衍生物(8a-k)。所有合成的化合物都使用光谱技术进行了结构表征,包括核磁共振(NMR)、傅里叶变换红外光谱(IR)和高分辨率质谱。正如预期的那样,这些新化合物与它们的前体相比显示出增强的抗结核活性。值得注意的是,化合物8b对结核分枝杆菌(Mtb)的MIC为0.078 μg/mL,比其前体5b (MIC = 0.156 μg/mL)的活性高约两倍。然而,两代化合物(例如,5a、5b、8a、8b、8c和8k)对携带katG突变的耐inh结核分枝杆菌菌株失去了活性。重要的是,这些化合物在浓度为10 μg/mL的THP-1人单核细胞中未观察到细胞毒性。通过1H NMR稳定性研究证实了先导化合物8b的结构完整性。还探讨了ADME/T参数(吸收、分布、代谢、排泄和毒性),以确定它们的药物相似性和安全性。总的来说,这些杂交分子为进一步优化新的抗结核药物提供了有价值的支架。
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引用次数: 0
Investigation of Potential Inhibitors of N-Myristoyltransferase in Leishmania amazonensis: A Computational and Experimental Study 亚马逊利什曼原虫n -肉豆浆酰基转移酶潜在抑制剂的研究:计算和实验研究
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-08 DOI: 10.1111/cbdd.70170
Mariana Sant’Anna Pereira Nicolau, Millena Almeida Resende, Cintia de Campos Chaves, Renata Santos Rodrigues, Veridiana de Melo Rodrigues, Nilson Nicolau-Junior, Kelly Aparecida Geraldo Yoneyama

Leishmaniasis, a disease caused by Leishmania parasites, poses a significant health threat globally, particularly in Latin America and Brazil. Leishmania amazonensis is an important species because it is associated with both cutaneous leishmaniasis and an atypical visceral form. Current treatments are hindered by toxicity, resistance, and high cost, driving the need for new therapeutic targets and drugs. N-myristoyltransferase (NMT) is an important anti-leishmanial target. N-myristoyltransferase (NMT) is an important target in Leishmania parasites, as it plays a crucial role in the process of myristoylation, a lipid modification that involves the attachment of myristate, a 14-carbon saturated fatty acid, to the N-terminus of specific proteins. In this work, a shape-based modeling approach was employed to identify potential NMT inhibitors in Leishmania amazonensis. Using a pyrazole sulphonamide as a reference ligand, a five-feature shape-based model was developed and validated. Virtual screening of the DIVERSet EXP and CL libraries (~1 million compounds) prioritized the top 500 ranked molecules per subset based on the TanimotoCombo score. Molecular docking studies identified the three highest-ranking compounds from each subset based on ChemPLP scores and docking pose consistency. Among the selected ligands, CL 54016012, EXP 6689657, and EXP 9226834 exhibited the most favorable binding interactions, with CL 54016012 forming stable hydrogen bonds with Tyr80, Tyr217, and Tyr345. Molecular dynamics (MD) simulations indicated that ligand binding did not significantly alter NMT structural stability, although variations in binding energy and hydrogen bond were observed. CL 54016012 demonstrated the highest docking score, optimal RMSD stability, and the lowest predicted IC50 value (19.81 μM), suggesting its potential as a lead compound. In vitro cytotoxicity assays revealed that CL 54016012, CL 74995016, and EXP 6689657 reduced L. amazonensis viability in a dose-dependent manner, placing them as promising candidates for further investigation in anti-leishmanial drug development.

利什曼病是一种由利什曼原虫寄生虫引起的疾病,在全球,特别是在拉丁美洲和巴西,对健康构成重大威胁。亚马逊利什曼原虫是一个重要的物种,因为它与皮肤利什曼病和非典型内脏利什曼病有关。目前的治疗受到毒性、耐药性和高成本的阻碍,推动了对新的治疗靶点和药物的需求。n -肉豆蔻酰基转移酶(NMT)是抗利什曼原虫的重要靶点。n -肉豆蔻酰基转移酶(NMT)是利什曼原虫的一个重要靶标,因为它在肉豆蔻酰基化过程中起着至关重要的作用,肉豆蔻酰基化是一种脂质修饰,涉及肉豆蔻酸盐(一种14碳饱和脂肪酸)附着到特定蛋白质的n端。在这项工作中,采用基于形状的建模方法来识别亚马逊利什曼原虫潜在的NMT抑制剂。以吡唑磺胺为参考配体,建立并验证了基于五特征形状的模型。对DIVERSet EXP和CL文库(约100万个化合物)进行虚拟筛选,根据TanimotoCombo评分对每个子集排名前500位的分子进行优先排序。分子对接研究根据ChemPLP评分和对接姿势一致性从每个子集中确定了三个排名最高的化合物。在所选择的配体中,CL 54016012、EXP 6689657和EXP 9226834表现出最有利的结合相互作用,CL 54016012与Tyr80、Tyr217和Tyr345形成稳定的氢键。分子动力学(MD)模拟表明,尽管观察到结合能和氢键的变化,但配体结合并未显著改变NMT的结构稳定性。CL 54016012的对接评分最高,RMSD稳定性最佳,IC50预测值最低(19.81 μM),提示其作为先导化合物的潜力。体外细胞毒性实验表明,CL 54016012、CL 74995016和EXP 6689657以剂量依赖的方式降低了亚马逊河蛭的活力,这使它们成为抗利什曼原虫药物开发的有希望的候选药物。
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引用次数: 0
Novel Triazole-Linked Indole Derivatives as Potent Soluble Epoxy Hydrolase Inhibitors With Promising Anticancer Activity 新型三唑-吲哚衍生物作为有效的可溶性环氧水解酶抑制剂,具有良好的抗癌活性
IF 3.3 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-03 DOI: 10.1111/cbdd.70164
Vijaykumar D. Nimbarte, Shreya S. Sonak, Sharda A. Ishwarkar, Bharat Rathod, Saiprem Nehlani

A novel series of triazole-linked indole derivatives was designed, synthesized, and evaluated as soluble epoxide hydrolase inhibitors (sEHIs) for their potential anticancer activity. These compounds exhibit strong binding affinity within the hydrophobic pockets of sEH, with compounds 9a and 9b emerging as the most potent inhibitors, achieving IC₅₀ values of 0.270 ± 0.014 nM and 0.358 ± 0.03 nM, respectively, in vitro. In addition, both compounds display significant cytotoxic activity against HeLa cells, with IC₅₀ values of 5.366 ± 0.91 μM and 5.686 ± 0.73 μM, respectively. Molecular docking studies, using the 1ZD5 crystal structure, reveal key hydrogen bond interactions analogous to those observed with 12-(3-adamantan-1-yl-ureido)-dodecanoic acid (AUDA), providing mechanistic insights into their inhibitory activity. Structure–activity relationship (SAR) analysis further informs the rational optimization of these derivatives for enhanced potency. Overall, these findings highlight triazole-linked indole derivatives as promising lead candidates for the development of sEH-targeted anticancer therapeutics.

设计、合成了一系列新的三唑-吲哚衍生物,并对其作为可溶性环氧化物水解酶抑制剂(sEHIs)的潜在抗癌活性进行了评价。这些化合物在sEH的疏水口袋内表现出很强的结合亲和力,化合物9a和9b成为最有效的抑制剂,在体外分别实现IC₅0值为0.270±0.014 nM和0.358±0.03 nM。此外,这两种化合物对HeLa细胞都显示出显著的细胞毒活性,IC₅₀值分别为5.366±0.91 μM和5.686±0.73 μM。利用1ZD5晶体结构进行分子对接研究,揭示了与12-(3-金刚烷-1-酰基脲基)-十二烷酸(AUDA)类似的关键氢键相互作用,为其抑制活性提供了机制见解。构效关系(SAR)分析进一步为这些衍生物的合理优化提供了依据。总的来说,这些发现强调了三唑连接的吲哚衍生物是发展seh靶向抗癌治疗的有希望的主要候选者。
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引用次数: 0
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Chemical Biology & Drug Design
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