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Non-rhythmic modulators of the circadian system: A new class of circadian modulators. 昼夜节律系统的非节律调制器:一类新的昼夜节律调制器。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-05-09 DOI: 10.1016/bs.ircmb.2024.04.003
Leonardo Vinícius Monteiro de Assis, Henrik Oster

The temporal organization of biological processes is critical for an organism's fitness and survival. An internal circadian clock network coordinates the alignment between the external and internal milieus via an array of systemic factors carrying temporal information such as core body temperature, autonomic activity, hormonal secretion, and behavioral functions. Collectively, these so called zeitgebers are characterized by strong temporal variations (i.e., high amplitudes). At the same time, target tissues show time windows of highest and lowest sensitivity to specific zeitgebers and, in this way, tissues can further modulate the effect of zeitgeber input in a process known as circadian gating. Such interplay between systemic signals and local circadian gating, however, suggests an additional level of temporal control-the resetting of target tissue rhythms in response to altered levels of tonic (i.e., non-rhythmic) signals. The recently identified tuning of liver transcriptome rhythms by thyroid hormones (THs) is one example of such regulation. THs show low-amplitude rhythms in the serum levels that are easily disrupted by altered thyroid states. At the same time, circadian rhythms in TH target tissues, such as liver, are markedly affected by alterations in TH state. Temporal regulation of TH target genes in other tissues suggests similar effects across the body. This chapter describes the rationale, experimental evidence, and potential consequences of this new level of circadian regulators.

生物过程的时间组织对生物体的适应性和生存至关重要。内部生物钟网络通过一系列携带时间信息的系统因素,如核心体温、自主神经活动、激素分泌和行为功能,协调外部和内部环境之间的一致性。总的来说,这些所谓的授时因子具有强烈的时间变化(即高振幅)的特征。同时,靶组织显示出对特定授时因子最高和最低敏感性的时间窗口,通过这种方式,组织可以在一个称为昼夜节律门控的过程中进一步调节授时因子输入的影响。然而,系统信号和局部昼夜节律门控之间的这种相互作用表明了另一种水平的时间控制——目标组织节律的重置是对音调(即非节奏性)信号水平改变的反应。最近发现的甲状腺激素(THs)调节肝脏转录组节律就是这种调节的一个例子。这表明血清水平的低振幅节律很容易因甲状腺状态改变而中断。同时,TH靶组织(如肝脏)的昼夜节律明显受到TH状态改变的影响。在其他组织中对TH靶基因的时间调控表明在全身范围内也有类似的作用。本章描述了这种新水平的昼夜节律调节器的基本原理、实验证据和潜在后果。
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引用次数: 0
Identification of circulating tumor DNA as a biomarker for diagnosis and response to therapies in cancer patients. 循环肿瘤DNA作为癌症患者诊断和治疗反应的生物标志物的鉴定。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-09-07 DOI: 10.1016/bs.ircmb.2024.08.006
Ronan W Hsieh, Lynn K Symonds, Jason Siu, Stacey A Cohen

The sampling of circulating biomarkers provides an opportunity for non-invasive evaluation and monitoring of cancer activity. In modern day practice, this has typically been in the form of circulating tumor DNA (ctDNA) detected in plasma. The field of ctDNA has been a burgeoning technology, with prominent applications for blood-based cancer screening and in disease status assessment, especially after curative-intent surgery to evaluate for minimal residual disease (MRD). Clinical applications for the latter show an incredibly high sensitivity in certain cancer types with a need for additional studies to determine how much clinical decision-making should be adapted based on ctDNA results and which cancer types, stages, and treatments are best informed by ctDNA results. This chapter provides an overview of ctDNA detection as tool for cancer screening, detecting MRD, and/or molecularly characterizing a cancer, highlighting the rapidly amassing research as a prognostic biomarker and emerging data on ctDNA as a predictive biomarker.

循环生物标志物的采样为非侵入性评估和监测癌症活动提供了机会。在现代实践中,这通常是在血浆中检测到循环肿瘤DNA (ctDNA)的形式。ctDNA是一项新兴的技术,主要应用于血液癌症筛查和疾病状态评估,特别是在治疗目的手术后评估最小残留疾病(MRD)。后者的临床应用在某些癌症类型中显示出令人难以置信的高灵敏度,需要额外的研究来确定临床决策应该根据ctDNA结果进行调整,以及哪些癌症类型、分期和治疗最受ctDNA结果的影响。本章概述了ctDNA检测作为癌症筛查、MRD检测和/或分子表征癌症的工具,重点介绍了作为预后生物标志物的快速积累的研究和ctDNA作为预测性生物标志物的新数据。
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引用次数: 0
Clinical development complexity of TGF-β inhibition: From fibrosis to cancer immunotherapy. TGF-β抑制的临床发展复杂性:从纤维化到癌症免疫治疗。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-21 DOI: 10.1016/bs.ircmb.2025.01.005
Gabriel Gallo-Oller, María Isabel Guillén-Antonini, Javier Dotor

More than four decades have passed since the discovery of Transforming Growth Factor beta (TGF-β) in 1981, a pivotal cytokine with profound implications in cell biology and potential clinical interventions for physio-pathological processes including fibrosis, immune-related disorders, chronic infections, vascular alterations, and the progression of tumour growth through invasiveness and metastasis. However, the introduction of a specific inhibitor targeting this cytokine into the pharmaceutical market remains elusive. Various molecular entities and therapeutic strategies, including small molecules, peptides, recombinant proteins (such as specific antibodies), oligonucleotides, and cellular-based therapies have been devised and subjected to clinical trials. These target the specific TGF-β molecular pathway, either directly or indirectly. The combination of different drug types, routes of administration, and clinical indications has generated substantial data, emphasizing significant variability in patient outcomes. Efforts to enhance the effectiveness of cancer immunotherapy by combining TGF-β inhibitors with other drugs and modulating complementary molecular targets have been explored over the past few decades. This approach aims to translate the promising preclinical efficacy of TGF-β blockade into commercially available drugs that are suitable for a broad spectrum of clinical indications. However, a clear path to address the lack of discernible efficacy and overcome the associated marketing challenges has not yet emerged. This review provides a comprehensive overview of the clinical development and emerging trends in TGF-β inhibitors and modulatory strategies, offering novel perspectives for addressing this persistent challenge.

自1981年发现转化生长因子β (TGF-β)以来,已经过去了40多年。TGF-β是一种关键的细胞因子,在细胞生物学和潜在的临床干预生理病理过程中具有深远的意义,包括纤维化、免疫相关疾病、慢性感染、血管改变和肿瘤侵袭和转移的生长进程。然而,一种针对这种细胞因子的特异性抑制剂进入制药市场仍然是难以捉摸的。各种分子实体和治疗策略,包括小分子、多肽、重组蛋白(如特异性抗体)、寡核苷酸和基于细胞的疗法已经被设计出来并进行了临床试验。这些靶向TGF-β分子途径,直接或间接。不同药物类型、给药途径和临床适应症的结合产生了大量数据,强调了患者结局的显著差异。在过去的几十年里,人们一直在探索通过TGF-β抑制剂与其他药物联合使用以及调节互补的分子靶点来提高癌症免疫治疗的有效性。该方法旨在将TGF-β阻断剂有希望的临床前疗效转化为适用于广泛临床适应症的市售药物。然而,一个明确的途径来解决缺乏可辨的功效和克服相关的营销挑战尚未出现。本文综述了TGF-β抑制剂和调控策略的临床发展和新趋势,为解决这一持续挑战提供了新的视角。
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引用次数: 0
Dichotomy of IL-27 in tumor immunity. IL-27在肿瘤免疫中的二分法。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-25 DOI: 10.1016/bs.ircmb.2025.01.002
Aline Risson, Leire Arrizabalaga, Miriam Ezcurra-Hualde, Román García-Fuentes, Pedro Berraondo, Fernando Aranda

IL-27, a cytokine with pleiotropic immunomodulatory functions, has garnered increasing attention in the context of tumor immunity, and its role in the tumor microenvironment (TME) is complex and just beginning to unravel. IL-27 is pivotal in polarizing immune responses toward an antitumor phenotype, promoting T-cell differentiation, enhancing cytotoxicity, and reducing the number of immunosuppressive elements within the tumor microenvironment. It also directly affects cancer cells, inducing apoptosis and inhibiting angiogenesis. However, IL-27 is a double-edged sword that can also promote mechanisms of action, inducing the expression of inhibitory molecules such as PD-L1 or IL-10 and inhibiting the maturation of dendritic cells. Here, we recapitulate the intricate mechanisms of IL-27, providing a comprehensive understanding of its immune-stimulating and immune-suppressing functions in the TME. This challenge is crucial for designing immunotherapies based on IL-27 in cancer.

IL-27作为一种具有多效性免疫调节功能的细胞因子,在肿瘤免疫研究中受到越来越多的关注,其在肿瘤微环境(tumor microenvironment, TME)中的作用是复杂的,并且刚刚开始被揭示。IL-27在分化抗肿瘤表型的免疫应答、促进t细胞分化、增强细胞毒性和减少肿瘤微环境中免疫抑制因子的数量方面起着关键作用。它还能直接影响癌细胞,诱导细胞凋亡,抑制血管生成。然而,IL-27是一把双刃剑,也可以促进作用机制,诱导PD-L1或IL-10等抑制分子的表达,抑制树突状细胞的成熟。在这里,我们概述了IL-27的复杂机制,为其在TME中的免疫刺激和免疫抑制功能提供了全面的了解。这一挑战对于设计基于IL-27的癌症免疫疗法至关重要。
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引用次数: 0
Introduction to microbiomes in health and diseases. 微生物组在健康和疾病中的介绍。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-31 DOI: 10.1016/bs.ircmb.2024.12.010
Prachi Agrawal, Prachi Mendhey, Robins Kumar, Subham Patel, Prakash Kumar Kaushik, Abhishek Dadsena, Santosh Kumar

The human microbiome is a complex ecological system of commensal, symbiotic, and pathogenic microorganisms that plays a crucial role in human health and disease. The microbiome includes both the living microorganisms also called microbiota and their synthesized metabolites and structural components. It is distributed to the gastrointestinal tract, skin, respiratory system, and oral cavity, each with a distinct microbial composition. Dysbiosis, or imbalance in the microbiome is linked to numerous diseases such as eczema, gastric ulcers, cardiovascular diseases, and cancer. The axes of microbial activity and their connections to disease, including the gut-skin, gut-lung, gut-brain, and gut-kidney play a crucial role in health and disease conditions. Also, the role of the microbiome in cancer development and response to therapy is examined. This book chapter underscores the importance of maintaining a balanced microbiome for overall health and the potential for microbiome-based interventions in disease prevention and treatment.

人类微生物群是一个由共生、共生和致病微生物组成的复杂生态系统,在人类健康和疾病中起着至关重要的作用。微生物组既包括活的微生物,也称为微生物群,也包括它们的合成代谢物和结构组分。它分布在胃肠道、皮肤、呼吸系统和口腔,每一个都有不同的微生物组成。生态失调或微生物群失衡与许多疾病有关,如湿疹、胃溃疡、心血管疾病和癌症。微生物活动的轴及其与疾病的联系,包括肠道-皮肤、肠道-肺、肠道-脑和肠道-肾,在健康和疾病状况中起着至关重要的作用。此外,微生物组在癌症发展和治疗反应中的作用也被检查。本章强调了维持平衡的微生物组对整体健康的重要性,以及在疾病预防和治疗中基于微生物组的干预的潜力。
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引用次数: 0
Link between dysbiosis and cancer: Contributing mechanisms and factors. 生态失调和癌症之间的联系:促进机制和因素。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-20 DOI: 10.1016/bs.ircmb.2024.12.004
Naimah Turner, Jocelynn Colunga-Minutti, Sayan Alekseev, Robert R Jenq, Roza Nurieva

The human microbiota is a complex ecosystem that dynamically interacts with the host systemically. Perturbations in the delicate balance of this ecological niche, termed dysbiosis, can make individuals susceptible to a multitude of diseases, including cancer. Specific microbes have been implicated in carcinogenesis through direct effects, modulation of the host immune system, and by promoting inflammation. Furthermore, the microbiota alters the response to and efficacy of anti-cancer therapeutics. Here, we highlight mechanisms by which dysbiosis contributes to cancer development, progression, and therapy as well as how the microbiota can be targeted to enhance cancer outcomes.

人类微生物群是一个复杂的生态系统,动态地与宿主系统相互作用。这种生态位的微妙平衡受到干扰,称为生态失调,可使个体易患多种疾病,包括癌症。特定微生物通过直接作用、调节宿主免疫系统和促进炎症参与致癌。此外,微生物群改变了抗癌治疗的反应和疗效。在这里,我们强调了生态失调促进癌症发生、进展和治疗的机制,以及微生物群如何能够靶向提高癌症预后。
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引用次数: 0
Effect of diet and lifestyle on microbiome composition. 饮食和生活方式对微生物组成的影响。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-26 DOI: 10.1016/bs.ircmb.2024.12.008
Rishibha Gupta, Smriti Gaur

Microbes are major drivers of many important physiological pathways in the human body. A well-adapted and established microbial community at key body sites performs a wide range of functions, including digestive and immunological roles. However, the structure of these microbial communities depends on numerous factors, both genetic and external. Diet and lifestyle are the most common external factors influencing microbiome composition. A healthy diet and lifestyle promote the growth of beneficial microbes, while disturbances in these factors can alter the entire microbial dynamics, potentially leading to pathogenesis. These perturbations can occur at any stage of life, from birth to old age, and may result in serious clinical conditions such as obesity, diabetes, cancers, metabolic syndromes, and many others. Therefore, it is essential to identify the dietary and lifestyle factors that support a healthy microbiome and prevent dysbiosis. This chapter aims to discuss the role of various component of diet and life style that can ultimately shape the human microbiome.

微生物是人体许多重要生理途径的主要驱动因素。在关键的身体部位,一个适应良好的微生物群落发挥着广泛的功能,包括消化和免疫作用。然而,这些微生物群落的结构取决于许多因素,包括遗传因素和外部因素。饮食和生活方式是影响微生物组组成的最常见的外部因素。健康的饮食和生活方式促进有益微生物的生长,而这些因素的干扰可以改变整个微生物动力学,可能导致发病机制。这些扰动可能发生在生命的任何阶段,从出生到老年,并可能导致严重的临床状况,如肥胖、糖尿病、癌症、代谢综合征和许多其他疾病。因此,必须确定饮食和生活方式因素,以支持健康的微生物群,防止生态失调。本章旨在讨论饮食和生活方式的各种组成部分的作用,最终可以塑造人类微生物组。
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引用次数: 0
The antiviral potential of Vγ9Vδ2 T cells: Therapeutic implications for immunocompromised adult and pediatric hosts. Vγ9Vδ2 T细胞的抗病毒潜力:对免疫功能低下的成人和儿童宿主的治疗意义
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-03-20 DOI: 10.1016/bs.ircmb.2025.03.004
Veronica Bordoni, Federica Guarracino, Angela Lorusso, Pietro Merli, Giuseppe Ippolito, Franco Locatelli, Chiara Agrati

A growing number of pediatric and adult subjects worldwide suffer from impaired immune response to pathogens, due to both disease and medical treatments. Different types of immunodeficiency or immunosuppressive drugs may affect different aspects of the immune system and therefore predispose to different risks of infections (aetiology and severity) that can seriously compromise the survival of patients. In this context, the identification of immune-therapeutic strategies aimed at enhancing innate and adaptive antimicrobial immunity is desirable. Vγ9Vδ2 T cells constitute a small fraction of T cells in peripheral blood, but exhibit potent, broad, and pleiotropic antiviral activities ranging from direct cytotoxicity of infected cells to the ability to enhance both innate and adaptive immunity of virus-specific αβ T cells. These activities are not virus-specific and can potentially act against virtually any infection. For this reason, Vγ9Vδ2 T cells represent an incredible opportunity in the management of immunocompromised patients who would greatly benefit from improved antimicrobial immunity. The lack of MHC restriction and the easily ex vivo expansion protocols allow to open their possible use in allogeneic context, thus overcoming the obstacle of possible reduced immune function in immunocompromised patients, and offering an "off-the shelves" effective cell therapy. Moreover, the ability of Vγ9Vδ2 T cells to recognize and kill cells expressing stress antigens may be exploited to optimize strategies based on universal Chimeric Antigen Receptor γδ T cells and/or bispecific γδ T-cell engagers. Finally, the recent data on the use of Vγ9Vδ2-derived-vesicles as therapeutic vectors and effective delivery systems further broaden their possible applications.

全世界越来越多的儿童和成人由于疾病和药物治疗而对病原体的免疫反应受损。不同类型的免疫缺陷或免疫抑制药物可能影响免疫系统的不同方面,因此易患不同的感染风险(病因和严重程度),这可能严重损害患者的生存。在这种情况下,确定旨在增强先天和适应性抗微生物免疫的免疫治疗策略是可取的。Vγ9Vδ2 T细胞在外周血中只占T细胞的一小部分,但表现出强大、广泛和多效性的抗病毒活性,从直接对感染细胞产生细胞毒性到增强病毒特异性αβ T细胞的先天和适应性免疫能力。这些活动不是病毒特异性的,可以潜在地对抗几乎任何感染。由于这个原因,Vγ9Vδ2 T细胞在免疫功能低下患者的治疗中代表了一个令人难以置信的机会,这些患者将从改善的抗菌免疫中受益匪浅。缺乏MHC限制和容易的体外扩增方案允许它们在同种异体环境中使用,从而克服了免疫功能低下患者可能降低免疫功能的障碍,并提供了一种“现成”的有效细胞疗法。此外,Vγ9Vδ2 T细胞识别和杀死表达应激抗原的细胞的能力可能被用来优化基于通用嵌合抗原受体γδ T细胞和/或双特异性γδ T细胞接合体的策略。最后,最近关于v - γ - 9v δ2衍生囊泡作为治疗载体和有效递送系统的研究进一步拓宽了它们的应用前景。
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引用次数: 0
Gamma-delta T cells in breast cancer: Dual role in tumor immunity and emerging therapeutic approaches. γ - δ T细胞在乳腺癌中的双重作用:肿瘤免疫和新兴的治疗方法。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-09-18 DOI: 10.1016/bs.ircmb.2025.08.013
Silvia Silva-Romeiro, María Luisa Sánchez-León, Carlos Jiménez-Cortegana, Rubén de Toro-Salas, Jesús Machuca Aguado, Víctor Sánchez-Margalet, Luis de la Cruz-Merino

Gamma delta (γδ) T cells are a unique subset of T lymphocytes capable of bridging innate and adaptive immunity. Unlike αβ T lymphocytes, γδ T cells bypass the need for Major Histocompatibility Complex (MHC)-restricted antigen presentation, allowing them to rapidly respond to stress signals in contexts such as infections and cancer. In breast cancer (BC), γδ T cells play a dual role, exhibiting both anti-tumoral and pro-tumoral activities. Their capacity for direct cytotoxicity, cytokine production, and antigen presentation highlights their versatility within the tumor microenvironment (TME). The prognostic impact of γδ T cells in BC is complex and varies depending on their density, subset, and functional state. While Vδ1 + γδ T cells have been associated with improved survival, particularly in triple-negative BC, other subsets, such as IL-17-producing γδ T cells, contribute to tumor progression, promoting angiogenesis and immune suppression. The emerging therapeutic potential of γδ T cells resides in their MHC-independent activity and stress antigen recognition, highlighting their potential value in cancer immunotherapy, including adoptive cell therapies (e.g., chimeric antigen receptor-T approaches). Additionally, the combination of γδ T cells with immune checkpoint inhibitors or tumor-targeting antibodies has shown promise in overcoming the immunosuppressive challenges of the TME.

γδ (γδ) T细胞是一种独特的T淋巴细胞亚群,能够桥接先天免疫和适应性免疫。与αβ T淋巴细胞不同,γδ T细胞绕过了主要组织相容性复合体(MHC)-限制性抗原呈递的需要,使它们能够快速响应感染和癌症等环境中的应激信号。在乳腺癌(BC)中,γδ T细胞发挥双重作用,表现出抗肿瘤和促肿瘤活性。它们的直接细胞毒性、细胞因子生产和抗原呈递能力突出了它们在肿瘤微环境(TME)中的多功能性。γδ T细胞对BC预后的影响是复杂的,取决于它们的密度、亚群和功能状态。虽然Vδ1 + γδ T细胞与提高生存率有关,特别是在三阴性BC中,但其他亚群,如产生il -17的γδ T细胞,有助于肿瘤进展,促进血管生成和免疫抑制。γδ T细胞的新兴治疗潜力在于其mhc非依赖性活性和应激抗原识别,突出了它们在癌症免疫治疗中的潜在价值,包括过继细胞治疗(例如,嵌合抗原受体-T方法)。此外,γδ T细胞与免疫检查点抑制剂或肿瘤靶向抗体的结合已显示出克服TME免疫抑制挑战的希望。
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引用次数: 0
CTCs and liquid biopsies in patients with colorectal cancer. 结直肠癌患者的CTCs和液体活检。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-30 DOI: 10.1016/bs.ircmb.2024.10.001
Areeb Lutfi, Maaz Khan Afghan, Pashtoon Murtaza Kasi

Liquid biopsy, which includes both circulating tumor DNA (ctDNA) and circulating tumor cells (CTCs) has become a valuable tool for cancer diagnosis and monitoring. It offers a less invasive approach than traditional tissue biopsy and recent technological advancements have enabled their use in comprehensive analysis of tumor molecular characteristics. By capturing the dynamic nature of tumors through repeated sampling, liquid biopsy addresses the limitations of tissue biopsy and provides insights into tumor heterogeneity over time. It is being extensively studied in patients with advanced colorectal cancer because it can aid in diagnosis, predict disease course, and guide treatment selection. Furthermore, as personalized medicine becomes more common, identifying genetic changes that cause cancer cells to become resistant to treatment is crucial. This chapter explores the emerging field of liquid biopsy, with a particular focus on the role and potential of circulating tumor cells (CTCs) in the context of colorectal cancer.

液体活检包括循环肿瘤DNA (ctDNA)和循环肿瘤细胞(CTCs),已成为癌症诊断和监测的重要工具。它提供了一种比传统组织活检侵入性更小的方法,最近的技术进步使其能够用于肿瘤分子特征的综合分析。通过反复取样捕捉肿瘤的动态特性,液体活检解决了组织活检的局限性,并提供了肿瘤异质性随时间变化的见解。它在晚期结直肠癌患者中被广泛研究,因为它可以帮助诊断,预测病程,指导治疗选择。此外,随着个性化医疗变得越来越普遍,识别导致癌细胞对治疗产生抗药性的基因变化至关重要。本章探讨了液体活检的新兴领域,特别关注循环肿瘤细胞(CTCs)在结直肠癌中的作用和潜力。
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引用次数: 0
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International review of cell and molecular biology
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