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Human Endogenous Retroviruses: Friends and Foes in Urology Clinics. 人类内源性逆转录病毒:泌尿外科诊所的朋友和敌人。
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-12-01 DOI: 10.5213/inj.2244284.142
Sun-Kyung Lee, Seung Hyun Kim, Joohong Ahnn

Human endogenous retroviruses (HERVs) are originated from ancient exogenous retroviruses, which infected human germ line cells millions of years ago. HERVs have generally lost their replication and retrotransposition abilities, but adopted physiological roles in human biology. Though mostly inactive, HERVs can be reactivated by internal and external factors such as inflammations and environmental conditions. Their aberrant expression can participate in various human malignancies with complex etiology. This review describes the features and functions of HERVs in urological subjects, such as urological cancers and human reproduction. It provides the current knowledge of the HERVs and useful insights helping practice in urology clinics.

人类内源性逆转录病毒(herv)起源于数百万年前感染人类生殖系细胞的古老外源性逆转录病毒。herv通常失去了复制和反转录的能力,但在人类生物学中发挥了生理作用。虽然大多数herv不活跃,但它可以被炎症和环境条件等内部和外部因素重新激活。它们的异常表达可参与多种病因复杂的人类恶性肿瘤。本文综述了herv在泌尿系统疾病中的特征和功能,如泌尿系统癌症和人类生殖。它提供了当前的herv知识和有用的见解,有助于泌尿外科诊所的实践。
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引用次数: 0
Stress-Induced Changes in Trophic Factor Expression in the Rodent Urinary Bladder: Possible Links With Angiogenesis. 应激诱导的啮齿动物膀胱营养因子表达变化:可能与血管生成有关。
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-12-01 DOI: 10.5213/inj.2244118.059
Mathijs M de Rijk, Amanda Wolf-Johnston, Aura F Kullmann, Katherine Maringer, Sunder Sims-Lucas, Gommert A van Koeveringe, Larissa V Rodríguez, Lori A Birder

Purpose: Substantive evidence supports a role of chronic stress in the development, maintenance, and even enhancement of functional bladder disorders such as interstitial cystitis/bladder pain syndrome (IC/BPS). Increased urinary frequency and bladder hyperalgesia have been reported in rodents exposed to a chronic stress paradigm. Here, we utilized a water avoidance stress (WAS) model in rodents to investigate the effect of chronic stress on vascular perfusion and angiogenesis.

Methods: Female Wistar-Kyoto rats were exposed to WAS for 10 consecutive days. Bladder neck tissues were analyzed by western immunoblot for vascular endothelial growth factor (VEGF) and nerve growth factor precursor (proNGF). Vascular perfusion was assessed by fluorescent microangiography followed by Hypoxyprobe testing to identify regions of tissue hypoxia.

Results: The expression of VEGF and proNGF in the bladder neck mucosa was significantly higher in the WAS rats than in the controls. There was a trend toward increased vascular perfusion, but without a statistically significant difference from the control group. The WAS rats displayed a 1.6-fold increase in perfusion. Additionally, a greater abundance of vessels was observed in the WAS rats, most notably in the microvasculature.

Conclusion: These findings show that chronic psychological stress induces factors that can lead to increased microvasculature formation, especially around the bladder neck, the region that contains most nociceptive bladder afferents. These findings may indicate a link between angiogenesis and other inflammatory factors that contribute to structural changes and pain in IC/BPS.

目的:大量证据支持慢性应激在膀胱功能障碍如间质性膀胱炎/膀胱疼痛综合征(IC/BPS)的发展、维持甚至增强中的作用。增加尿频和膀胱痛觉过敏已报道在啮齿动物暴露于慢性应激范式。本研究采用小鼠避水应激(WAS)模型,研究慢性应激对血管灌注和血管生成的影响。方法:雌性Wistar-Kyoto大鼠连续10 d暴露于WAS。膀胱颈部组织采用免疫印迹法检测血管内皮生长因子(VEGF)和神经生长因子前体(proNGF)。用荧光显微血管造影评估血管灌注,然后用缺氧探针检测组织缺氧区域。结果:was大鼠膀胱颈黏膜中VEGF和proNGF的表达明显高于对照组。血管灌注有增加的趋势,但与对照组相比无统计学差异。WAS大鼠灌注量增加1.6倍。此外,在was大鼠中观察到更丰富的血管,尤其是微血管。结论:这些结果表明,慢性心理应激诱导因素可导致微血管形成增加,特别是膀胱颈部周围,这是包含最多伤害性膀胱传入神经的区域。这些发现可能表明血管生成与其他炎症因子之间存在联系,这些炎症因子有助于IC/BPS的结构改变和疼痛。
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引用次数: 1
Commentary on "Risk Factors for Transurethral Coagulation for Hemostasis During Holmium Laser Enucleation of the Prostate". “钬激光前列腺摘除术中经尿道凝血止血的危险因素”评论。
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-12-01 DOI: 10.5213/inj.2244240.120
Pankaj N Maheshwari, Aditya Goyal, Pushkar Shrivastava
Copyright © 2022 Korean Continence Society This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. Corresponding author: Pankaj N. Maheshwari https://orcid.org/0000-0002-9055-0238 Fortis Hospital Mulund, Mulund West, Mumbai 400080, India Email: dr.maheshwaripn@gmail.com Submitted: October 9, 2022 / Accepted after revision: November 23, 2022 To the editor, We read the manuscript, ‘Risk factors for transurethral coagulation for hemostasis during holmium laser enucleation of the prostate,’ by Yoon et al. [1] with huge interest. We would like to complement the authors for a large experience in holmium laser enucleation of the prostate (HoLEP) and an interesting account of need of electro-cautery during the procedure. The need for electro-cautery coagulation in 22.8% patients is indeed very high. It was used in about 19.1% to make the vision clearer for morcellation but even 3.7% for bleeding that could not be controlled by laser coagulation is high. HoLEP as a part of management protocol has been available for more than 2 decades and apart from the initial learning curve, electro-coagulation is rarely needed. It is very difficult to agree with the conclusion that the risk of electro-coagulation increases in patients with transitional zone volume >35 mL. HoLEP is indicated for large volume adenoma [2] and the proposed odds ratio for need for coagulation of 5.17 in ≥53.5-mL adenoma appears very high. The very fact that most recent guidelines propose HoLEP as a treatment of choice for large prostate volumes and for patients on antiplatelet or anticoagulant medications is a testament for its coagulation capabilities [3]. The authors presumption that the risk of bleeding increases as the prostate volume increases because the larger the prostate, the more blood supply is required, and thus, the blood vessel density increases may not hold true for HoLEP as in contrast to transurethral resection of the prostate where we resect through the adenoma, during HoLEP the procedure is performed at the capsular level hence the blood vessel density in the prostatic tissue will not have an impact. We would like to provide our tips for reducing bleeding and hence need for electro-coagulation. (1) Use the laser at the highest possible frequency. The simultaneous coagulation is better at higher frequency. (2) During the dissection, it is important to remain on the capsule. The bleeding is more if you cut through the tissue. (3) Bleeding increases if there are capsular perforation. Being aware and avoiding them is important. (4) Dissect by nontouch technique by the plasma of the laser and not by direct cutting. (5) If bleeding is still there, a catheter with light traction and irrigation for a few minutes controls most bleedin
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引用次数: 0
Oxidative Stress and Its Relation to Lower Urinary Tract Symptoms. 氧化应激及其与下尿路症状的关系
IF 1.8 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-12-01 Epub Date: 2022-12-30 DOI: 10.5213/inj.2244190.095
Karl-Erik Andersson

The aim of this review is to discuss how to link lower urinary tract symptoms (LUTS) and oxidative stress (OS) and to define relevant targets for therapeutic intervention. Narrative review based on published literature. Many of the multifactorial pathophysiological mechanisms behind LUTS can initiate reactive oxygen species (ROS) generation. Assuming that OS is a consequence rather than a primary cause of LUTS it seems reasonable to identify both the disease mechanism initiating LUTS, and the source of ROS involved. There are many possible sources of ROS overproduction, but the NADPH oxidase (NOX) family of enzymes is the primary source; NOX activation in turn, may result in the activation of secondary ROS sources, i.e., ROS-dependent ROS production. Selective NOX inhibition therefore seems an attractive therapeutic strategy in LUTS treatment. The finding of NOX2 localization to centers in the brain associated with micturition control, opens up for further studies of NOX involvement in the central control of micturition, normally and in disease. Further information on the localization of the different isoforms of NOX in the LUT e.g., the bladder wall and its components and the prostate, is desirable. To optimize treatment, the pathophysiological mechanism initiating LUTS, and the activated isoform of NOX, should be identified. Unfortunately, in most cases of LUTS this is currently not possible. Even if selective NOX inhibitors have entered the clinical trial stage for treatment of disorders other than LUT dysfunction, their efficacy for LUTS treatment has to be demonstrated. If this can be achieved, an attractive approach would be combination of selective NOX inhibition with established drug therapies.

本综述旨在讨论如何将下尿路症状(LUTS)与氧化应激(OS)联系起来,并确定相关的治疗干预目标。根据已发表的文献进行叙述性综述。下尿路症状背后的许多多因素病理生理机制都会引发活性氧(ROS)的产生。假定OS是LUTS的后果而非主要原因,那么确定引发LUTS的疾病机制和所涉及的ROS来源似乎是合理的。ROS 过量产生的可能来源有很多,但 NADPH 氧化酶(NOX)家族酶是主要来源;NOX 的激活反过来又可能导致次要 ROS 来源的激活,即 ROS 依赖性 ROS 的产生。因此,选择性抑制 NOX 似乎是治疗 LUTS 的一种有吸引力的治疗策略。NOX2 定位于大脑中与控制排尿有关的中枢,这一发现为进一步研究 NOX 在正常和疾病情况下参与排尿中枢控制开辟了道路。我们希望进一步了解 NOX 不同异构体在 LUT(如膀胱壁及其组成部分和前列腺)中的定位情况。为了优化治疗,应确定引发 LUTS 的病理生理机制和激活的 NOX 同工酶。遗憾的是,在大多数 LUTS 病例中,目前还无法做到这一点。即使选择性 NOX 抑制剂已进入临床试验阶段,用于治疗 LUT 功能障碍以外的其他疾病,但其治疗 LUTS 的疗效仍有待证实。如果能够做到这一点,一种有吸引力的方法就是将选择性 NOX 抑制剂与已有的药物疗法相结合。
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引用次数: 0
Interstitial Cystitis: A Consequence of Weakened Uterosacral Ligaments Failing to Support Visceral Plexuses and Bladder Stretch Receptors, and Therefore Potentially Curable? 间质性膀胱炎:弱子宫骶韧带不能支持内脏丛和膀胱拉伸受体的结果,因此可能治愈吗?
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-12-01 DOI: 10.5213/inj.2142366.183
Peter Petros
Copyright © 2022 Korean Continence Society This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. Corresponding author: Peter Petros https://orcid.org/0000-0002-9611-3258 University of Western Australia School of Mechanical and Mathematical Engineering, Perth, Australia Email: pp@kvinno.com *Current status: retired pelvic floor surgeon. Submitted: November 29, 2021 / Accepted after revision: June 9, 2022 To the editor, I read the state-of-the-art review of interstitial cystitis/bladder pain syndrome (IC/BPS) by Ueda et al. [1] with great interest. An erudite, scholarly paper, it states there is a crisis as regards IC—namely, there has been no progress for 25 years. The authors concluded [1], “Thus, there can be no bright future for IC/BPS without these 3 steps: (1) understanding the symptoms, (2) detecting abnormal findings in or outside the bladder, and (3) verifying that the abnormality is the cause of the symptoms” [1]. This commentary aims to address their statements, first by introducing an important discovery to International Neurourology Journal readers, Dr. Scheffler’s histologically validated cure of IC/BPS with Hunner ulcer (nonulcerating) [2], and then by discussing its implications relevant to those 3 statements [1]. Scheffler set out to manage a 73-year-old woman with classical posterior fornix syndrome (PFS) symptoms—predictably co-occurring chronic pelvic pain (CPP), urge, abnormal emptying/retention, nocturia, and frequency—caused by laxity of the uterosacral ligaments (USLs) and cured by repair thereof [3], not IC, by repair of cardinal ligaments and USLs, which is the standard cure for PFS [3]. To test whether any relationship exists between PFS and IC [2], we revisited previous data from 46 women with CPP and 171 bladder symptoms, treated for PFS with tissue fixation system (TFS) mini-sling surgery, who fit the International Continence Society (ICS) definition of IC [4]. Their workup [5], included the validated Integral Theory System Questionnaire, preoperative and postoperative urodynamics evaluations, and speculum testing (Fig. 1). The cure rates [5] were 76% for CPP, 74% for urge incontinence, 80% for abnormal emptying/retention, 75% for nocturia 75%, and 50% for frequency. Two women had glomerulations. None had Hunner ulcers. In another study by Wagenlehner et al. [6], among 1,420 women with prolapse and PFS symptoms treated by 2 different posterior sling operations, 599 had CPP, 1,179 had bladder symptoms, and 162 had fecal incontinence. A TFS study by Liedl et al. [7], found that 194 women had CPP, with 881 bladder symptoms that were variously cured. Other data showed small pain/urge symptom deterioration at 5 years [8]. The cure of CPP and bladder symptoms [6-8] was in acco
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引用次数: 0
Striatal ZBTB16 Is Associated With Cognitive Deficits in Alzheimer Disease Mice. 纹状体ZBTB16与阿尔茨海默病小鼠的认知缺陷有关
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-11-01 DOI: 10.5213/inj.2244254.127
Sangjoon Lee, Tae Kyoo Kim, Ji Eun Choi, Hye-Sun Kim, Heh-In Im

Purpose: In Alzheimer disease (AD), brain regions such as the cortex and the hippocampus show abundant amyloid load which correlates with cognitive function decline. Prior to the significant development of AD pathophysiology, patients report the manifestation of neuropsychiatric symptoms, indicating a functional interplay between basal ganglia structures and hippocampal regions. Zinc finger and BTB domain-containing protein 16 (ZBTB16) is a transcription factor that controls the expression of downstream genes and the involvement of ZBTB16 in the striatum undergoing pathological aging in AD and the resulting behavioral phenotypes has not yet been explored.

Methods: To study molecular alterations in AD pathogenesis, we analyzed the brain from amyloid precursor protein (APP)/ presenilin 1 (PS1) transgenic mice. The molecular changes in the striatal region of the brain were analyzed via the immunoblotting, and the quantitative RNA sequencing. The cognitive impairments of APP/PS1 mice were assessed via 3 behavioral tests: 3-chamber test, Y-maze test, and noble object recognition test. And multielectrode array experiments for the analysis of the neuronal activity of the striatum in APP/PS1 mice was performed.

Results: We found that the alteration in ZBTB16 levels that occurred in the early ages of the pathologically aging striatum coalesces with the disruption of transcriptional dysregulation while causing social memory deficits, anxiety-like behavior. The early ZBTB16 knockdown treatment in the striatum of APP/PS1 mice rescued cognition that continued into later age.

Conclusion: This study demonstrates that perturbation of transcriptional regulation of ZBTB16 during pathological aging may influence cognitive impairments and reveals a potent approach to targeting the transcriptional regulation of the striatum for the treatment of AD.

目的:在阿尔茨海默病(AD)中,大脑皮层和海马等区域显示出丰富的淀粉样蛋白负荷,与认知功能下降有关。在阿尔茨海默病病理生理显著发展之前,患者报告神经精神症状的表现,表明基底神经节结构和海马区域之间的功能相互作用。锌指和BTB结构域含蛋白16 (ZBTB16)是AD患者纹状体病理性衰老过程中调控下游基因表达的转录因子,ZBTB16参与其中,其行为表型尚未明确。方法:为了研究AD发病机制中的分子变化,我们分析了淀粉样蛋白前体蛋白(APP)/早老素1 (PS1)转基因小鼠的大脑。通过免疫印迹和定量RNA测序分析脑纹状体区分子变化。APP/PS1小鼠通过3个行为测试:3室测试、y迷宫测试和高贵物体识别测试来评估认知障碍。应用多电极阵列实验对APP/PS1小鼠纹状体神经元活动进行分析。结果:我们发现,发生在病理性衰老纹状体早期的ZBTB16水平的改变与转录失调的破坏结合在一起,同时导致社会记忆缺陷和焦虑样行为。APP/PS1小鼠纹状体中ZBTB16的早期敲除可挽救持续到老年的认知能力。结论:本研究表明,在病理性衰老过程中干扰ZBTB16的转录调节可能会影响认知障碍,并揭示了针对纹状体转录调节治疗AD的有效途径。
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引用次数: 4
Changes in the Neuronal Architecture of the Hippocampus in a 6-Hydroxydopamine-Lesioned Rat Model of Parkinson Disease. 6-羟多巴胺损伤大鼠帕金森病模型海马神经元结构的变化
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-11-01 DOI: 10.5213/inj.2244252.126
Bohye Kim, Poornima D E Weerasinghe-Mudiyanselage, Mary Jasmin Ang, Jeongmin Lee, Sohi Kang, Jong-Choon Kim, Sung-Ho Kim, Joong-Sun Kim, Chaeyong Jung, Taekyun Shin, Changjong Moon

Purpose: Parkinson disease (PD) is a progressive neurodegenerative disorder in which dopaminergic (DAergic) systems are destroyed (particularly in the nigrostriatal system), causing both motor and nonmotor symptoms. Hippocampal neuroplasticity is altered in PD animal models, resulting in nonmotor dysfunctions. However, little is known about the precise mechanism underlying the hippocampal dysfunctions in PD.

Methods: Striatal 6-hydroxydopamine (6-OHDA) infusions were performed unilaterally in adult Sprague Dawley rats. Both motor and nonmotor symptoms alongside the expression of tyrosine hydroxylase (TH) in the substantia nigra and striatum were confirmed in 6-OHDA-lesioned rats. The neuronal architecture in the hippocampus was analyzed by Golgi staining.

Results: During the 7-8 weeks after infusion, the 6-OHDA-lesioned rats exhibited motor and nonmotor dysfunctions (especially anxiety/depression-like behaviors). Rats with unilateral 6-OHDA infusion displayed reduced TH+ immunoreactivity in the ipsilateral nigrostriatal pathway of the brain. Golgi staining revealed that striatal 6-OHDA infusion significantly decreased the dendritic complexity (i.e., number of crossing dendrites, total dendritic length, and branch points) in the ipsilateral hippocampal conus ammonis 1 (CA1) apical/basal and dentate gyrus (DG) subregions. Additionally, the dendritic spine density and morphology were significantly altered in the CA1 apical/basal and DG subregions following striatal 6-OHDA infusion. However, alteration of microglial and astrocytic distributions did not occur in the hippocampus following striatal 6-OHDA infusion.

Conclusion: The present study provides anatomical evidence that the structural plasticity in the hippocampus is altered in the late phase following striatal 6-OHDA infusion in rats, possibly as a result of the prolonged suppression of the DAergic system, and independent of neuroinflammation.

目的:帕金森病(PD)是一种进行性神经退行性疾病,其中多巴胺能(DAergic)系统被破坏(特别是在黑质纹状体系统),引起运动和非运动症状。海马神经可塑性在PD动物模型中发生改变,导致非运动功能障碍。然而,PD患者海马功能障碍的确切机制尚不清楚。方法:单侧注射成年大鼠纹状体6-羟多巴胺(6-OHDA)。在6- ohda损伤的大鼠中证实了运动和非运动症状以及黑质和纹状体中酪氨酸羟化酶(TH)的表达。采用高尔基染色法分析海马神经元结构。结果:注射后7-8周,6- ohda损伤大鼠出现运动和非运动功能障碍(尤其是焦虑/抑郁样行为)。单侧6-OHDA输注大鼠大脑同侧黑质纹状体通路TH+免疫反应性降低。高尔基染色显示,纹状体6-OHDA灌注显著降低了同侧海马锥体1 (CA1)顶/基区和齿状回(DG)亚区的树突复杂性(即交叉树突数量、树突总长度和分支点)。此外,纹状体注入6-OHDA后,CA1尖/基底区和DG亚区树突棘密度和形态发生了显著改变。然而,纹状体6-OHDA输注后,海马的小胶质细胞和星形胶质细胞分布并未发生改变。结论:本研究为大鼠纹状体6-羟多巴胺输注后海马结构可塑性在后期发生改变提供了解剖学证据,可能是由于对胆能系统的长期抑制,且与神经炎症无关。
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引用次数: 3
Quantitative Sequencing Analysis of the Striatal Transcriptome in a Mouse Model of Alzheimer Disease. 阿尔茨海默病小鼠模型纹状体转录组定量测序分析。
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-11-01 DOI: 10.5213/inj.2244256.128
Tae Kyoo Kim, Sangjoon Lee, Heh-In Im

Purpose: The purpose of this study was to analyze the transcriptomic changes in the striatum of amyloid precursor protein/presenilin 1 (APP/PS1) transgenic mice and uncover its association with the methyl-CpG binding protein 2 (MeCP2) mediated-changes in striatal epigenetic signature during Alzheimer disease (AD) pathological progression.

Methods: To observe transcriptomic alterations in the striatum before the onset of cognitive impairment in APP/PS1 mice, quantitative 3'mRNA sequencing was performed with RNA extracted from the striatum of 6-month-old and 12-month-old wildtype and APP/PS1 mice. In addition, chromatin immunoprecipitation sequencing was conducted with the DNA from wildtype and APP/PS1 mice of the same age as aforementioned. For transcriptomic analysis, comparison terms were constructed based on aging and transgene expression-normal-aging (12-month-old wildtype/6-month-old wildtype), early-AD (6-month-old APP/PS1/6-month-old wildtype), and late-AD (12-month-old APP/PS1/6-month-old wildtype). To compare the changes in biological pathways and networks, we analyzed gene lists from each comparison term via bioinformatics tools including DAVID (Database for Annotation, Visualization, and Integrated Discovery), STRING (Search Tool for the Retrieval of Interacting Genes/Proteins), and SynGO (Synaptic Gene Ontologies). Furthermore, to assume the effect MeCP2 in AD pathological conditions may have on the transcriptome regulation, analysis of the common genes from Quant-Seq and MeCP2-ChIP-Seq was performed.

Results: Enriched pathways including immune system and inflammatory response were confirmed in normal- aging and lateAD, respectively. In particular, enriched pathways of gene expression regulation, transcriptional regulation, and protein catabolic pathways were found to be significantly altered in early-AD. MeCP2-bound genes that were significantly altered in the transcriptome were suggested to be target genes that have a role in the striatum of the early-stage AD model.

Conclusion: This study confirmed that the alteration of the striatal transcriptomic profile in APP/PS1 mice was involved with several biological pathways. Additionally, comparative analysis of the transcriptomic changes and the MeCP2 bound regions found that a group of differentially expressed genes may be regulated under the epigenetic control of MeCP2.

目的:本研究旨在分析淀粉样蛋白前体蛋白/早老素1 (APP/PS1)转基因小鼠纹状体的转录组学变化,揭示其与甲基cpg结合蛋白2 (MeCP2)介导的纹状体表观遗传特征在阿尔茨海默病(AD)病理进展中的关联。方法:利用6月龄和12月龄野生型小鼠和APP/PS1小鼠纹状体提取的RNA进行3’mrna定量测序,观察APP/PS1小鼠认知功能障碍发生前纹状体转录组学变化。此外,对野生型和同年龄的APP/PS1小鼠的DNA进行染色质免疫沉淀测序。为了进行转录组学分析,基于衰老和转基因表达构建比较项——正常衰老(12个月野生型/6个月野生型)、早期ad(6个月APP/ ps1 /6个月野生型)和晚期ad(12个月APP/ ps1 /6个月野生型)。为了比较生物通路和网络的变化,我们通过生物信息学工具分析了每个比较术语的基因列表,包括DAVID(注释,可视化和集成发现数据库),STRING(相互作用基因/蛋白质检索搜索工具)和SynGO(突触基因本体)。此外,为了推测AD病理状态下MeCP2可能对转录组调控的影响,我们对来自Quant-Seq和MeCP2- chip - seq的常见基因进行了分析。结果:在正常衰老和迟发性衰老中分别证实了免疫系统和炎症反应途径的丰富。特别是,基因表达调控、转录调控和蛋白质分解代谢途径的富集在早期ad中被发现显著改变。转录组中显著改变的mecp2结合基因被认为是在早期AD模型纹状体中起作用的靶基因。结论:本研究证实APP/PS1小鼠纹状体转录组谱的改变涉及多种生物学途径。此外,通过对转录组变化和MeCP2结合区进行对比分析,发现MeCP2可能调控了一组差异表达基因。
{"title":"Quantitative Sequencing Analysis of the Striatal Transcriptome in a Mouse Model of Alzheimer Disease.","authors":"Tae Kyoo Kim,&nbsp;Sangjoon Lee,&nbsp;Heh-In Im","doi":"10.5213/inj.2244256.128","DOIUrl":"https://doi.org/10.5213/inj.2244256.128","url":null,"abstract":"<p><strong>Purpose: </strong>The purpose of this study was to analyze the transcriptomic changes in the striatum of amyloid precursor protein/presenilin 1 (APP/PS1) transgenic mice and uncover its association with the methyl-CpG binding protein 2 (MeCP2) mediated-changes in striatal epigenetic signature during Alzheimer disease (AD) pathological progression.</p><p><strong>Methods: </strong>To observe transcriptomic alterations in the striatum before the onset of cognitive impairment in APP/PS1 mice, quantitative 3'mRNA sequencing was performed with RNA extracted from the striatum of 6-month-old and 12-month-old wildtype and APP/PS1 mice. In addition, chromatin immunoprecipitation sequencing was conducted with the DNA from wildtype and APP/PS1 mice of the same age as aforementioned. For transcriptomic analysis, comparison terms were constructed based on aging and transgene expression-normal-aging (12-month-old wildtype/6-month-old wildtype), early-AD (6-month-old APP/PS1/6-month-old wildtype), and late-AD (12-month-old APP/PS1/6-month-old wildtype). To compare the changes in biological pathways and networks, we analyzed gene lists from each comparison term via bioinformatics tools including DAVID (Database for Annotation, Visualization, and Integrated Discovery), STRING (Search Tool for the Retrieval of Interacting Genes/Proteins), and SynGO (Synaptic Gene Ontologies). Furthermore, to assume the effect MeCP2 in AD pathological conditions may have on the transcriptome regulation, analysis of the common genes from Quant-Seq and MeCP2-ChIP-Seq was performed.</p><p><strong>Results: </strong>Enriched pathways including immune system and inflammatory response were confirmed in normal- aging and lateAD, respectively. In particular, enriched pathways of gene expression regulation, transcriptional regulation, and protein catabolic pathways were found to be significantly altered in early-AD. MeCP2-bound genes that were significantly altered in the transcriptome were suggested to be target genes that have a role in the striatum of the early-stage AD model.</p><p><strong>Conclusion: </strong>This study confirmed that the alteration of the striatal transcriptomic profile in APP/PS1 mice was involved with several biological pathways. Additionally, comparative analysis of the transcriptomic changes and the MeCP2 bound regions found that a group of differentially expressed genes may be regulated under the epigenetic control of MeCP2.</p>","PeriodicalId":14466,"journal":{"name":"International Neurourology Journal","volume":"26 Suppl 2","pages":"S117-125"},"PeriodicalIF":2.3,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/ce/64/inj-2244256-128.PMC9767686.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10492762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Brain Region-Dependent Alternative Splicing of Alzheimer Disease (AD)-Risk Genes Is Associated With Neuropathological Features in AD. 阿尔茨海默病(AD)危险基因的脑区域依赖性选择性剪接与AD的神经病理特征相关
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-11-01 DOI: 10.5213/inj.2244258.129
Sara Kim, Seonggyun Han, Soo-Ah Cho, Kwangsik Nho, Insong Koh, Younghee Lee

Purpose: Alzheimer disease (AD) is one of the most complex diseases and is characterized by AD-related neuropathological features, including accumulation of amyloid-β plaques and tau neurofibrillary tangles. Dysregulation of alternative splicing (AS) contributes to these features, and there is heterogeneity in features across brain regions between AD patients, leading to different severity and progression rates; however, brain region-specific AS mechanisms still remain unclear. Therefore, we aimed to systemically investigate AS in multiple brain regions of AD patients and how they affect clinical features.

Methods: We analyzed RNA sequencing (RNA-Seq) data obtained from brain regions (frontal and temporal) of AD patients. Reads were mapped to the hg19 reference genome using the STAR aligner, and exon skipping (ES) rates were estimated as percent spliced in (PSI) by rMATs. We focused on AD-risk genes discovered by genome-wide association studies, and accordingly evaluated associations between PSI of skipped exons in AD-risk genes and Braak stage and plaque density mean (PM) for each brain region. We also integrated whole-genome sequencing data of the ascertained samples with RNA-Seq data to identify genetic regulators of feature-associated ES.

Results: We identified 26 and 41 ES associated with Braak stage in frontal and temporal regions, respectively, and 10 and 50 ES associated with PM. Among those, 10 were frontal-specific (CLU and NTRK2), 65 temporal-specific (HIF1A and TRPC4AP), and 26 shared ES (APP) that accompanied functional Gene Ontology terms, including axonogenesis in shared-ES genes. We further identified genetic regulators that account for 44 ES (44% of the total). Finally, we present as a case study the systematic regulation of an ES in APP, which is important in AD pathogenesis.

Conclusion: This study provides new insights into brain region-dependent AS regulation of the architecture of AD-risk genes that contributes to AD pathologies, ultimately allowing identification of a treatment target and region-specific biomarkers for AD.

目的:阿尔茨海默病(AD)是最复杂的疾病之一,其特点是AD相关的神经病理特征,包括淀粉样蛋白-β斑块和tau神经原纤维缠结的积累。选择性剪接(AS)的失调促成了这些特征,AD患者在不同脑区之间的特征存在异质性,导致不同的严重程度和进展率;然而,大脑区域特异性的AS机制仍不清楚。因此,我们旨在系统地研究AD患者多脑区AS及其对临床特征的影响。方法:我们分析了从AD患者的大脑区域(额叶和颞叶)获得的RNA测序(RNA- seq)数据。使用STAR比对器将Reads映射到hg19参考基因组,并通过rMATs估计外显子跳变(ES)率为剪接在(PSI)中的百分比。我们关注通过全基因组关联研究发现的ad风险基因,并相应地评估ad风险基因中跳过外显子的PSI与每个脑区Braak阶段和斑块密度平均值(PM)之间的关系。我们还将确定样本的全基因组测序数据与RNA-Seq数据相结合,以确定特征相关ES的遗传调控因子。结果:在额叶区和颞叶区分别鉴定出26个和41个与Braak期相关的ES, 10个和50个与PM相关的ES。其中,10个是额特异性的(CLU和NTRK2), 65个是时间特异性的(HIF1A和TRPC4AP), 26个共享ES (APP)伴随着功能基因本体术语,包括共享ES基因的轴突发生。我们进一步确定了44个ES(占总数的44%)的遗传调控因子。最后,我们介绍了APP中ES的系统调控,这在AD发病机制中很重要。结论:该研究为AD风险基因结构的脑区域依赖性调节提供了新的见解,该基因结构有助于AD病理,最终允许识别AD的治疗靶点和区域特异性生物标志物。
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引用次数: 3
Epigenetic Dysfunction of Neurodegenerative Diseases, MeCP2 and More. 神经退行性疾病的表观遗传功能障碍,MeCP2等。
IF 2.3 3区 医学 Q3 UROLOGY & NEPHROLOGY Pub Date : 2022-11-01 DOI: 10.5213/inj.2222edi04
Heh-In Im
Copyright © 2022 Korean Continence Society This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. This quarter’s International Neurourology Journal special issue is “Epigenetic Dysfunction of Neurodegenerative Diseases, MeCP2 and More.” The current issue consists of 3 basic research papers specifically dealing with animal experiments, one on clinical trials, and another utilizing clinical databases. A large part of these papers covers the effects of epigenetic regulation on gene expression and the functional changes of specific brain regions that arise from the pathogenesis of neurodegenerative diseases including Alzheimer disease (AD) and Parkinson disease (PD). In this issue, Lee et al. [1] report that epigenetic changes by MeCP2 may alter ZBTB16 expression in the striatum, and that ZBTB16 function as a transcription factor may influence cognitive decline during AD pathogenesis. Kim et al. [2] performed quantitative sequencing of the early and late-stage AD mouse model striatum and compared the resulting changes in the transcriptome with the dataset from MeCP2 ChIP-Seq. The comparative analysis indicates that certain genes of the transcriptional regulatory pathway could be altered by epigenetic regulators in the course of AD pathogenesis. As a research result highly related to this, Kim et al. [3] shows that neuronal dysfunction in the striatum may lead to structural changes in the hippocampus, suggesting that the functional changes of the striatum in AD and PD are associated with the cognitive decline in neurodegenerative diseases. As an epigenetic mechanism that may affect PD onset, Guhathakurta et al. [4] report the deregulation of the repression mechanism by CpG binding protein TET1 and its downstream effect on SNCA gene expression, implicating SNCA repression as a novel therapeutic strategy for PD. Another posttranscriptional regulation of interest is the alternative splicing of AD-risk genes analyzed by Kim et al. [5]. Here, they identify several novel exon skipping sites according to the frontal and temporal brain regions and proposed them as a treatment target and region-specific biomarker of AD. The epigenetic regulation of gene expression for the maintenance and regulation of brain function is a research field that has recently attracted attention. At the same time, the role of epigenetics in normal aging and neurodegenerative diseases, specifically the functional role of MeCP2 as a brain-enriched epigenetic regulator and the methylation status of the genome have been reported by numerous studies. However, the overarching mechanisms that lead from epigenetic regulation to changes in brain executive function have not yet been fully understood. Thus, in this special issue, we focus on paper
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引用次数: 1
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