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Artificial Intelligence Tools for Drug Target Discovery Research: Database, Tools, Applications, and Challenges. 用于药物靶点发现研究的人工智能工具:数据库、工具、应用和挑战。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-05 DOI: 10.1002/chem.202503240
Rui Zhang, Shao-Xuan Liu, Yang Tao, Xin-Nian Wang, Li Feng, Zhe Wang

The identification of drug targets remains one of the most critical challenges in pharmaceutical research. The rapid progress of artificial intelligence (AI) is significantly advancing this landscape by enabling more efficient and accurate drug-target interaction prediction. AI-driven approaches can integrate and analyze massive biomedical datasets, elucidating complex signaling networks and providing systematic insights into drug mechanisms of action. These developments have greatly accelerated virtual screening, binding affinity estimation, and target identification. However, despite these advancements, key challenges persist, such as ensuring the precision of predictions and overcoming the barriers to integrating AI tools with drug target discovery. This review provides a comprehensive overview of recent public databases, advanced computational methods, and user-friendly AI tools, highlighting both their potential and challenges. It also offers practical guidance for researchers without computational expertise, illustrating how these technologies can be effectively incorporated into current research workflows to advance drug target discovery and ultimately accelerate the development of novel therapeutic drugs.

药物靶点的识别仍然是药物研究中最关键的挑战之一。人工智能(AI)的快速发展通过实现更有效和准确的药物-靶点相互作用预测,显着推进了这一领域。人工智能驱动的方法可以整合和分析大量生物医学数据集,阐明复杂的信号网络,并为药物作用机制提供系统的见解。这些发展大大加快了虚拟筛选、结合亲和力估计和目标识别。然而,尽管取得了这些进步,关键的挑战仍然存在,例如确保预测的准确性和克服将人工智能工具与药物靶点发现相结合的障碍。这篇综述全面概述了最近的公共数据库、先进的计算方法和用户友好的人工智能工具,突出了它们的潜力和挑战。它还为没有计算专业知识的研究人员提供了实用指导,说明了如何将这些技术有效地纳入当前的研究工作流程,以推进药物靶点的发现,并最终加速新型治疗药物的开发。
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引用次数: 0
Design, Synthesis and Aggregation of Amphiphilic Monomers-Cyclic and Tubular Hydrogen-Bonded Self-assembly in Conventional and Polar Media. 两亲性单体的设计、合成和聚集——环状和管状氢键自组装在常规和极性介质中。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-05 DOI: 10.1002/chem.202502804
Anna Lidskog, Algirdas Neniškis, Simon Edin, Zoltán Takács, Vaidas Klimkevičius, Edvinas Orentas, Kenneth Wärnmark

Two hydrogen-bonding monomers containing tetraethylene glycol (TEG) chains have been synthesized and characterized. The monomers are based on a bicyclic scaffold appended with either 4H-bonding benzyl-substituted ureidopyrimidinone motifs or 2H-bonding unsubstituted pyrrole-fused ureidopyrimidinone motifs, with the TEG chains introduced with the aim of developing amphiphilic monomers soluble in nonpolar and polar organic solvents in order to extend the utility of H-bonding in supramolecular chemistry. In CDCl3, both monomers formed cyclic tetramers. The monomer containing 2H-bonding motifs was found to form significantly less-stable aggregates than its previously reported alkylated analogue, most likely due to interference from the TEG chains. Despite the weaker aggregation, the 2H-bonded tetramers were able to stack into tubular polymers through orthogonal H-bonding in less polar solvent (toluene) or when a suitable guest (C70) was introduced. Comparison of the TEGylated monomers with previously reported alkylated analogues showed that the introduction of TEG chains resulted in increased solubility in a wide range of solvents. By using one of the TEGylated monomers, nonpolar C60 could be solubilized in polar solvent acetonitrile by forming an inclusion complex. This complex was used as a homogeneous catalyst for photochemical oxidation of sulfides to sulfoxides in acetonitrile.

合成了两个含四乙二醇(TEG)链的氢键单体,并对其进行了表征。这些单体是基于一个双环支架,附加有4h键的苯基取代脲嘧啶基或2h键的未取代吡啶融合脲嘧啶基,并引入TEG链,目的是开发可溶于非极性和极性有机溶剂的两亲性单体,以扩展h键在超分子化学中的应用。在CDCl3中,两个单体形成环状四聚体。与之前报道的烷基化类似物相比,含有2h键基序的单体形成的聚集体明显不稳定,这很可能是由于TEG链的干扰。尽管聚集较弱,但在极性较低的溶剂(甲苯)或适当的客体(C70)中,2h键四聚体可以通过正交氢键堆叠成管状聚合物。TEG基化单体与先前报道的烷基化类似物的比较表明,TEG链的引入导致在各种溶剂中的溶解度增加。使用其中一种聚乙二醇化单体,非极性C60可以通过形成包合物在极性溶剂乙腈中溶解。该配合物在乙腈中用作硫化物光化学氧化制亚砜的均相催化剂。
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引用次数: 0
Bottom-Up Approach for the Synthesis of Contorted Nanographenes by Cp*Co(III)-Catalyzed Annulative-π-Extension-Cyclization Cascade. Cp*Co(III)催化环化-π-延伸-环化级联合成扭曲纳米石墨烯的自下而上方法。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-05 DOI: 10.1002/chem.202502972
Arya Bhattacharyya, Abhisek Metya, Modhu Sudan Maji

In the domain of bottom-up approach, regioselective fusion of aromatic moiety onto an arene templet remains scarcely explored, yet represents a crucial tool for the rapid generation of polycyclic aromatic hydrocarbons (PAHs). An unprecedented bottom-up strategy for the rapid construction of PAHs is developed by employing arene-derived ketones and carbon-rich 1,3-diynes. Many of these synthesized PAHs have tilted π-electronic structure, unique edges and topologies. A range of arene-derived ketones participated in this annulative-π-extension-cyclization cascade under first-row Co(III)-catalysis. Electronic nature of the 1,3-diynes guided the final mode of cyclization leading to the formal fusing of one fluorene moiety via 5-exo-dig cyclization or phenanthrene nucleus through 6-endo-dig cyclization. Intermediate ethynyl-PAHs were also isolated in case of relatively electron-deficient diynes. The contorted π-planes of the synthesized PAHs were elucidated by single-crystal X-ray analysis. Detailed DFT studies reinforce the proposed mechanistic pathway, validating the formation of the major regioisomer of PAHs. Furthermore, less aromatic character of fluorene moiety over phenanthrene nucleus is supported by the NICS(1)zz and ACID calculations.

在自下而上的方法中,芳烃片段在芳烃模板上的区域选择性融合仍然很少被探索,但它是快速生成多环芳烃(PAHs)的重要工具。利用芳烃衍生酮和富含碳的1,3-二炔,开发了一种前所未有的自下而上快速构建多环芳烃的策略。许多合成的多环芳烃具有倾斜π电子结构、独特的边缘和拓扑结构。在第一排Co(III)催化下,一系列芳烃衍生的酮类参与了这一环状-π-延伸-环化级联反应。1,3-二炔的电子性质指导了最终的环化模式,导致一个芴部分通过5-外环化或菲核通过6-内环化进行形式融合。在相对缺电子的diynes中也分离到中间乙基多环芳烃。用单晶x射线分析证实了合成的多环芳烃的扭曲π面。详细的DFT研究加强了提出的机制途径,验证了多环芳烃主要区域异构体的形成。此外,NICS(1)zz和ACID计算支持了菲核上芴部分芳香性较弱。
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引用次数: 0
MXene@MOF Composites: Converging Synthesis Strategies, Structural Features, and Emerging Applications. MXene@MOF复合材料:聚合合成策略、结构特征和新兴应用。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-04 DOI: 10.1002/chem.202502884
Cheriyan John, Kalathiparambil Rajendra Pai Sunajadevi, Dephan Pinheiro, Rudregowda Sarojamma Vishwanath

2D materials have attracted a lot of interest since the invention of graphene because of their remarkable qualities and adaptability. The distinct architectures and complementary qualities of MOFs (metal-organic frameworks) and MXenes offer intriguing prospects in various sectors. Derived from MAX phases, MXenes have hydrophilic surfaces, and excellent electrical conductivity. MOFs, on the other hand, provide large surface area, adjustable porosity, and diverse chemical functions. Nevertheless, there are drawbacks associated with both materials. MXenes are prone to oxidation and self-stacking, whereas MOFs have limited structural stability and poor electrical conductivity. The development of MXene@MOF composites provides a synergistic solution, combining the advantages of both materials while reducing their individual drawbacks. In this review, we highlight the most recent advances in MXene@MOF composites and provide a focused discussion on their unique structural features, emerging synthesis trends, and rapidly expanding applications. These elements distinguish this work from earlier reviews. This review systematically explores the structures and synthesis methods of these materials, including solvothermal, hydrothermal, and in-situ growth techniques, and examines their wide range of applications. Superior electron transport, high surface area, and improved structural stability lead to enhanced performance of MXene@MOF composites in supercapacitors, water splitting, photocatalysis, and sensing.

自石墨烯发明以来,二维材料因其卓越的品质和适应性而引起了人们的极大兴趣。mof(金属有机框架)和MXenes的独特结构和互补特性在各个领域提供了有趣的前景。源自MAX相,MXenes具有亲水性表面和优异的导电性。另一方面,mof具有较大的表面积、可调节的孔隙率和多种化学功能。然而,这两种材料都有缺点。MXenes易于氧化和自堆积,而mof具有有限的结构稳定性和导电性差。MXene@MOF复合材料的开发提供了一种协同解决方案,结合了两种材料的优点,同时减少了它们各自的缺点。在这篇综述中,我们重点介绍了MXene@MOF复合材料的最新进展,并对其独特的结构特征、新兴的合成趋势和迅速扩展的应用进行了重点讨论。这些因素使这项工作有别于早期的评论。本文系统地探讨了这些材料的结构和合成方法,包括溶剂热法、水热法和原位生长法,并探讨了它们的广泛应用。优越的电子传递,高表面积和改进的结构稳定性导致MXene@MOF复合材料在超级电容器,水分解,光催化和传感方面的性能增强。
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引用次数: 0
TiO2/FeCoS Heterojunction Anode for Fast-Charging Lithium-Ion Batteries. 快速充电锂离子电池用TiO2/FeCoS异质结阳极。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-04 DOI: 10.1002/chem.202503104
Peng Wang, Xiaojing Lv, Mingzhe Li, Tiantian Ma, Ronghui Liu, Tianyi Zhang, Jiakun Wang, Yuxuan Gao, Jianjun Liu, Wei Zhou

To develop fast-charging lithium-ion batteries (LIBs), optimizing insertion-type anode structure is crucial for achieving fast lithium-ion diffusion and high electronic conductivity. Here, we combine insertion-type TiO2 with high-capacity FeCoS to construct a TiO2/FeCoS heterojunction, which enhances electron/ion transport, lowers the ion diffusion energy barrier, and thereby improves quick-charging performance. The resulting anode exhibits a high reversible capacity of 627.7 mAh g-1 at 0.1 A g-1, 2.3 times that of TiO2. Notably, it gives a remarkable capacity of 241.7 mAh g-1 at 10 A g-1 and maintains excellent stability over 10,000 cycles with an ultralow capacity decay of just 0.002% per cycle. Experiments and theoretical calculations confirm the superior performance originates from enhanced Li+ ions adsorption and reduced diffusion barrier at the heterointerface, which accelerates Li+ insertion/extraction kinetics. This work provides an effective pathway to accelerate electrochemical kinetics and enable fast-charging LIBs.

为了开发快速充电的锂离子电池,优化插入式阳极结构是实现锂离子快速扩散和高电子导电性的关键。本研究将插入型TiO2与高容量FeCoS结合,构建了TiO2/FeCoS异质结,增强了电子/离子输运,降低了离子扩散能垒,从而提高了快速充电性能。该阳极在0.1 a g-1下具有627.7 mAh g-1的高可逆容量,是TiO2的2.3倍。值得注意的是,它在10 a g-1时提供241.7 mAh g-1的显着容量,并且在10,000次循环中保持出色的稳定性,每个循环的超低容量衰减仅为0.002%。实验和理论计算证实,优异的性能源于增强的Li+离子吸附和减少的扩散屏障在异质界面,加速Li+的插入/提取动力学。这项工作为加速电化学动力学和实现锂离子电池的快速充电提供了有效途径。
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引用次数: 0
Self-assembly and Lateral Cobalt Coordination of a Fivefold Symmetric Cyanostar Macrocycle on an Au(111) Surface. 金(111)表面上五重对称Cyanostar大环的自组装和钴的横向配位。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/chem.202503051
Lenka Černá, Miguel Martínez García, Shanmugasibi K Mathialagan, Sofía O Parreiras, Koen Lauwaet, José Ignacio Urgel, Aurelio Gallardo, Amar H Flood, Tomás Torres, José M Gallego, Giovanni Bottari, David Écija

The functionalization of solid surfaces with responsive macrocyclic compounds is a key strategy for developing advanced functional materials, with applications in molecular sensing, catalysis, and nanoscale electronics. Here, we report the self-assembly and lateral cobalt coordination, on an Au(111) surface and under ultra-high vacuum conditions, of a fivefold symmetric cyanostar macrocycle, a class of anion recognition molecules. This represents the first example of a close-packed regular assembly of a pentagonal macrocycle at the solid-vacuum interface.

响应性大环化合物的固体表面功能化是开发先进功能材料的关键策略,在分子传感、催化和纳米电子学等领域都有应用。在这里,我们报道了在Au(111)表面和超高真空条件下,五重对称氰星大环(一类阴离子识别分子)的自组装和横向钴配位。这是固体-真空界面上五边形大环紧密排列的第一个例子。
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引用次数: 0
Denaturation of Water in Alkaline Melts. 碱性熔体中水的变性。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/chem.202502562
Xudong Zhang, Oldamur Hollóczki, Johannes Ingenmey, Barbara Kirchner, Michael Ruck

Extremely high base concentrations (cB) in ultra-alkaline liquids, also known as hydroflux, alter the thermodynamic and structural properties of water. Mixtures of water and alkali (AOH, A = Na, K) with molar base ratios of q(A) = n(H2O):n(AOH) ≤ 2:1 (cB ≥ 25 mol L-1) show an overproportionally reduced vapor pressure compared to more diluted systems. The vapor pressure of a melt with q(A) = 0.8 (cB = 70 mol L-1) at 200°C is negligible. Ab initio molecular dynamics simulations revealed substantial structural reorganization of the hydrogen bonding network in the equimolar mixture of KOH and water. Distinctive molecular features included altered coordination geometries, shortened hydrogen bonds, and frequent proton transfer events, including Grotthuss diffusion, indicative of an altered hydrogen-bond network and increased proton mobility. Cluster population analysis shows that a significant number of H3O2 - anions are present, which exhibit a near symmetrical hydrogen bond with O···H distances <1.28 Å. The hydroflux can be seen as an intermediate between an alkaline solution and a molten salt {K+·H+·2OH-}, in which the water has a vanishing chemical activity.

超碱性液体(也称为流体通量)中极高的碱浓度(cB)改变了水的热力学和结构性质。当水和碱(AOH, A = Na, K)的摩尔碱比为q(A) = n(H2O):n(AOH)≤2:1 (cB≥25 mol L-1)时,蒸汽压比稀释后的体系明显降低。在200℃时,q(a) = 0.8 (cB = 70 mol L-1)的熔体蒸气压可以忽略不计。从头算分子动力学模拟揭示了氢氧根和水等摩尔混合物中氢键网络的结构重组。独特的分子特征包括改变的配位几何,缩短的氢键和频繁的质子转移事件,包括Grotthuss扩散,表明氢键网络改变和质子迁移率增加。聚类总体分析表明,水中存在大量的H3O2 -阴离子,这些阴离子表现出接近对称的氢键,其距离为O··H+·H+·2OH-},其中水的化学活性消失。
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引用次数: 0
π-π-Coupled J-Aggregates Synergized With Hydrogen Bonding via Molecular Planarity Engineering for Second Near-Infrared Imaging and Phototherapy. 基于分子平面工程的π-π偶联j -聚集体与氢键协同用于二次近红外成像和光治疗。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/chem.202502825
Shuai Zhao, Shengru He, Rongrong Deng, Ping Yang, Yincheng Chang, Jun Nie, Fang Sun

A novel J-aggregates configuration, termed π-π-coupled J-aggregates, was successfully constructed based on low-molecular-weight hemicyanine dyes (HCY-3). Unlike classical J-aggregates, the π-π-coupled J-aggregates are formed through synergistic π-π stacking and hydrogen bonding interactions between monomeric molecules, The rigidified- molecular planar architecture not only avoids fluorescence quenching of the photosensitizer but also significantly broadens the bathochromic absorption band owing to enhanced conjugation effects while preserving photodynamic activity. As a result, a broad bathochromic absorption from 600 nm to an absorption tail over 1100 nm was achieved, allowing the photosensitizer to be compatible with a variety of laser sources. The enhanced-receptor conjugation significantly boosts singlet oxygen generation efficiency while reinforcing π-π interactions, endowing the J-aggregates with exceptional thermal stability, chemical stability, and photothermal generation capability. Under 980 nm laser excitation, the π-π-coupled J-aggregations based on HCY-3 J-NPs exhibited excellent ROS generation capacity and NIR-II fluorescence emission, successfully achieving multimodal photothermal/photodynamic antitumor therapy guided by NIR-II FL imaging. Such π-π-coupled J-aggregates may represent a new route for the design of NIR-II photosensitizers.

以低分子量半花青素染料(HCY-3)为原料,成功构建了一种新的j -聚集体结构,称为π-π偶联j -聚集体。与传统的j -聚集体不同,π-π偶联j -聚集体是通过单体分子之间的协同π-π堆叠和氢键相互作用形成的,刚性的分子平面结构不仅避免了光敏剂的荧光猝灭,而且由于共轭效应的增强,在保持光动力活性的同时显着拓宽了荧光吸收带。因此,实现了从600 nm到超过1100 nm的吸收尾的广泛色吸收,使光敏剂与各种激光源兼容。增强的受体共轭性显著提高了单线态氧生成效率,同时增强了π-π相互作用,使j -聚集体具有优异的热稳定性、化学稳定性和光热生成能力。在980 nm激光激发下,基于HCY-3 J-NPs的π-π偶联j -聚集体表现出优异的ROS生成能力和NIR-II荧光发射能力,成功实现了NIR-II FL成像引导下的多模态光热/光动力抗肿瘤治疗。这种π-π耦合j -聚集体可能为NIR-II光敏剂的设计提供了一条新的途径。
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引用次数: 0
Multiple Conductance States in Artificial Unimolecular Channels. 人工单分子通道中的多电导态。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/chem.202503331
Jia-Fen Lin, Xu-Dong Wang, Yu-Fei Ao, Qi-Qiang Wang, De-Xian Wang

Since the 1980s, the patch-clamp technique has revealed subconductance states (substates) in natural ion channels in addition to the traditional closed and fully open states. While subconductance states offer critical insights into the structure and function of ion channels, the structural basis underlying this behavior remains unclear. Artificial ion channels can serve as simplified molecular models to establish structure-function relationships; however, replicating subconductance behavior is extremely challenging. Here, we present a concept for a conformationally self-tuning macrocyclic skeleton designed to observe and modulate subconductance states in artificial channels. This concept was experimentally validated using oxacalix[2]arene[2]triazine-based molecular funnels.

自20世纪80年代以来,膜片钳技术揭示了天然离子通道除传统的闭合和全开状态外的亚电导状态(substates)。虽然亚电导状态为离子通道的结构和功能提供了重要的见解,但这种行为背后的结构基础仍不清楚。人工离子通道可以作为简化的分子模型来建立结构功能关系;然而,复制亚电导行为是极具挑战性的。在这里,我们提出了一个构象自调谐大环骨架的概念,旨在观察和调制人工通道中的亚电导状态。这一概念在实验中得到了验证,使用的是基于草卡利[2]芳烃[2]三嗪的分子漏斗。
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引用次数: 0
Gas-Phase Synthesis of Hyperbranched UHMWPE by Enhancing Chain Walking and Minimizing Chain Transfer. 增强链走和减少链转移的超支化超高分子量聚乙烯气相合成研究。
IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-03 DOI: 10.1002/chem.202503137
Jianjian Dai, Yan Wang, Shengyu Dai

A series of rigid-flexible unsymmetrical bulky α-diimine palladium catalysts was employed for the gas-phase polymerization of ethylene, enabling the synthesis of hyperbranched ultrahigh molecular weight polyethylene (UHMWPE). Compared to conventional solution-phase polymerization, the gas-phase method significantly suppresses chain transfer while promoting chain walking, leading to a simultaneous increase in both molecular weight and branching density. Under optimized conditions, the resulting polyethylene exhibited high molecular weight (up to 2053 kg/mol) and branching densities as high as 107 branches per 1000 carbon atoms. Structural characterization confirmed the presence of long-chain branches and branch-on-branch architectures, indicative of a hyperbranched topology. The unsymmetrical palladium catalysts produced polyethylene with higher molecular weight and branching density than the benchmark catalysts, by combining suppressed chain transfer with high chain-walking ability. This work demonstrates the potential of gas-phase polymerization as a solvent-free, environmentally benign route to advanced polyolefin materials with tailored architectures.

采用一系列刚柔不对称体积α-二亚胺钯催化剂对乙烯进行气相聚合,合成了超支化超高分子量聚乙烯(UHMWPE)。与传统的溶液相聚合相比,气相聚合显著抑制链转移,同时促进链行走,导致分子量和分支密度同时增加。在优化条件下,得到的聚乙烯具有较高的分子量(高达2053 kg/mol)和每1000个碳原子高达107个分支的分支密度。结构表征证实了长链分支和支对支结构的存在,表明了一种超支化的拓扑结构。不对称钯催化剂通过抑制链转移和高链行走能力的结合,制备出比基准催化剂更高的聚乙烯分子量和分支密度。这项工作证明了气相聚合作为一种无溶剂、环保的途径,具有定制结构的先进聚烯烃材料的潜力。
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引用次数: 0
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Chemistry - A European Journal
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