Pub Date : 2020-11-03DOI: 10.1186/s42397-020-00071-3
Caner Yavuz, Shakhnozakhan Tillaboeva, A. Bakhsh
{"title":"Apprehending the potential of BABY BOOM transcription factors to mitigate cotton regeneration and transformation","authors":"Caner Yavuz, Shakhnozakhan Tillaboeva, A. Bakhsh","doi":"10.1186/s42397-020-00071-3","DOIUrl":"https://doi.org/10.1186/s42397-020-00071-3","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"10 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76902356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cotton N rate could be reduced further under the planting model of late sowing and high-density in the Yangtze River valley","authors":"Xinghu Song, Ying Huang, Yuan Yuan, Atta Tung Shahbaz, Souliyanonh Biangkham, Guozheng Yang","doi":"10.1186/s42397-020-00065-1","DOIUrl":"https://doi.org/10.1186/s42397-020-00065-1","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"58 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80266093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-09-07DOI: 10.1186/s42397-020-00068-y
Cuixia Liu, Zhifang Li, Lingling Dou, Yi Yuan, Changsong Zou, Haihong Shang, Langjun Cui, G. Xiao
{"title":"A genome-wide identification of the BLH gene family reveals BLH1 involved in cotton fiber development","authors":"Cuixia Liu, Zhifang Li, Lingling Dou, Yi Yuan, Changsong Zou, Haihong Shang, Langjun Cui, G. Xiao","doi":"10.1186/s42397-020-00068-y","DOIUrl":"https://doi.org/10.1186/s42397-020-00068-y","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"517 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77145022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-09-05DOI: 10.1186/s42397-020-00063-3
F. Chen, Yanjun Guo, Li Chen, Xin Gan, Min Liu, Juan Li, Wenliang Xu
{"title":"Global identification of genes associated with xylan biosynthesis in cotton fiber","authors":"F. Chen, Yanjun Guo, Li Chen, Xin Gan, Min Liu, Juan Li, Wenliang Xu","doi":"10.1186/s42397-020-00063-3","DOIUrl":"https://doi.org/10.1186/s42397-020-00063-3","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"3 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85425699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-08-30DOI: 10.1186/s42397-020-00061-5
Da Fabrice, Dannon A. Elie, D. O. Kobi, ZinsouAmégnikin Valerien, Houndété A. Thomas, TOFFA-MEHINTO Joëlle, Elegbede I. A. T. Maurille, Olou B. Dénis, T. Manuele
{"title":"Toward the efficient use of Beauveria bassiana in integrated cotton insect pest management","authors":"Da Fabrice, Dannon A. Elie, D. O. Kobi, ZinsouAmégnikin Valerien, Houndété A. Thomas, TOFFA-MEHINTO Joëlle, Elegbede I. A. T. Maurille, Olou B. Dénis, T. Manuele","doi":"10.1186/s42397-020-00061-5","DOIUrl":"https://doi.org/10.1186/s42397-020-00061-5","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"53 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90615746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-08-26DOI: 10.1186/s42397-020-00067-z
Abdul Rehman, Nida Mustafa, X. Du, M. Azhar
{"title":"Heritability and correlation analysis of morphological and yield traits in genetically modified cotton","authors":"Abdul Rehman, Nida Mustafa, X. Du, M. Azhar","doi":"10.1186/s42397-020-00067-z","DOIUrl":"https://doi.org/10.1186/s42397-020-00067-z","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"193 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79689055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-08-25DOI: 10.1186/s42397-020-00060-6
Lingling Ma, Ying Su, Hushuai Nie, Yupeng Cui, Cheng Cheng, Babar Ijaz, J. Hua
{"title":"QTL and genetic analysis controlling fiber quality traits using paternal backcross population in upland cotton","authors":"Lingling Ma, Ying Su, Hushuai Nie, Yupeng Cui, Cheng Cheng, Babar Ijaz, J. Hua","doi":"10.1186/s42397-020-00060-6","DOIUrl":"https://doi.org/10.1186/s42397-020-00060-6","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"281 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79612326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-08-24DOI: 10.21203/rs.3.rs-63005/v1
G. Song, Qiuhong Yang, Dongyun Zuo, Hailiang Cheng, Youping Zhang, Qiaolian Wang, J. Ashraf, Xiaoxu Feng, Simin Li, Xiaoqing Chen, Shang Liu
Introduction Genome sequence plays an important role in both basic and applied studies. Gossypium raimondii , the putative contributor of the D subgenome of upland cotton ( G. hirsutum ), highlights the need to improve the genome quality rapidly and efficiently. Methods We performed Hi-C sequencing of G. raimondii and reassembled its genome based on a set of new Hi-C data and previously published scaffolds. We also compared the reassembled genome sequence with the previously published G. raimondii genomes for gene and genome sequence collinearity. Result A total of 98.42% of scaffold sequences were clustered successfully, among which 99.72% of the clustered sequences were ordered and 99.92% of the ordered sequences were oriented with high-quality. Further evaluation of results by heat-map and collinearity analysis revealed that the current reassembled genome is significantly improved than the previous one (Nat Genet 44:98–1103, 2012). Conclusion This improvement in G. raimondii genome not only provides a better reference to increase study efficiency but also offers a new way to assemble cotton genomes. Furthermore, Hi-C data of G. raimondii may be used for 3D structure research or regulating analysis.
{"title":"Improved Gossypium raimondii genome using a Hi-C-based proximity-guided assembly","authors":"G. Song, Qiuhong Yang, Dongyun Zuo, Hailiang Cheng, Youping Zhang, Qiaolian Wang, J. Ashraf, Xiaoxu Feng, Simin Li, Xiaoqing Chen, Shang Liu","doi":"10.21203/rs.3.rs-63005/v1","DOIUrl":"https://doi.org/10.21203/rs.3.rs-63005/v1","url":null,"abstract":"Introduction Genome sequence plays an important role in both basic and applied studies. Gossypium raimondii , the putative contributor of the D subgenome of upland cotton ( G. hirsutum ), highlights the need to improve the genome quality rapidly and efficiently. Methods We performed Hi-C sequencing of G. raimondii and reassembled its genome based on a set of new Hi-C data and previously published scaffolds. We also compared the reassembled genome sequence with the previously published G. raimondii genomes for gene and genome sequence collinearity. Result A total of 98.42% of scaffold sequences were clustered successfully, among which 99.72% of the clustered sequences were ordered and 99.92% of the ordered sequences were oriented with high-quality. Further evaluation of results by heat-map and collinearity analysis revealed that the current reassembled genome is significantly improved than the previous one (Nat Genet 44:98–1103, 2012). Conclusion This improvement in G. raimondii genome not only provides a better reference to increase study efficiency but also offers a new way to assemble cotton genomes. Furthermore, Hi-C data of G. raimondii may be used for 3D structure research or regulating analysis.","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"1 1","pages":"1-7"},"PeriodicalIF":2.6,"publicationDate":"2020-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89585537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Feasibility study on the use of near-infrared spectroscopy for rapid and nondestructive determination of gossypol content in intact cottonseeds","authors":"Cheng Li, Bangsong Su, Tianlun Zhao, Cong Li, Jinhong Chen, Shuijin Zhu","doi":"10.1186/s42397-021-00088-2","DOIUrl":"https://doi.org/10.1186/s42397-021-00088-2","url":null,"abstract":"","PeriodicalId":15400,"journal":{"name":"Journal of Cotton Research","volume":"7 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2020-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91167297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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