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Genetic structure of Neisseria gonorrhoeae populations: a non-clonal pathogen. 淋病奈瑟菌群体的遗传结构:一种非克隆病原体。
Pub Date : 1993-11-01 DOI: 10.1099/00221287-139-11-2603
M O'Rourke, E Stevens

Reproduction by binary fission generates a clonal genetic structure in bacterial populations in the absence of a high rate of recombination. The extent of recombination in natural populations of Neisseria gonorrhoeae was determined from an analysis of electrophoretically demonstrable allelic variation at structural genes encoding nine enzyme loci in 227 worldwide isolates. No significant linkage disequilibrium was evident in the population, indicating that recombination must be frequent, relative to binary fission. The genetic structure of N. gonorrhoeae was compared with that of Bacillus subtilis from an earlier study. Linkage disequilibrium was less extreme in the N. gonorrhoeae population than in the local population of B. subtilis, in which only modest clonal structure was evident. Thus, N. gonorrhoeae, unlike pathogens so far examined, has a non-clonal population structure. As expected in a freely recombining population, no correlation was found between electrophoretic genotype and serovar or auxotype.

在没有高重组率的细菌群体中,通过二元裂变繁殖产生克隆遗传结构。通过对227株淋病奈瑟菌自然种群中编码9个酶位点的结构基因的电泳可证明的等位基因变异分析,确定了淋病奈瑟菌重组的程度。在种群中没有明显的连锁不平衡,这表明相对于二元裂变,重组一定是频繁的。将淋病奈瑟菌的遗传结构与早期研究的枯草芽孢杆菌进行了比较。与枯草芽孢杆菌的局部种群相比,淋病奈瑟菌种群的连锁不平衡不那么极端,后者只有适度的克隆结构。因此,淋病奈瑟菌,不像迄今为止检查的病原体,具有非克隆群体结构。正如预期的那样,在自由重组群体中,电泳基因型与血清型或缺陷型之间没有发现相关性。
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引用次数: 104
Purification and characterization of glucose-6-phosphate dehydrogenase from Aspergillus niger and Aspergillus nidulans. 黑曲霉和中性曲霉中葡萄糖-6-磷酸脱氢酶的纯化及特性研究。
Pub Date : 1993-11-01 DOI: 10.1099/00221287-139-11-2793
L M Wennekes, T Goosen, P J van den Broek, H W van den Broek

Glucose-6-phosphate dehydrogenase (G6PD; D-glucose 6-phosphate:NADP+ oxidoreductase, EC 1.1.1.49) has been purified from Aspergillus nidulans and Aspergillus niger by a combination of affinity and anion exchange chromatography. A 500-1000-fold purification was obtained and the final enzyme preparations were shown to be pure but not homogeneous. For both fungi the purified enzyme preparation gave two bands on native and denaturing gels. The catalytically active form is a multimer. The molecular mass of the monomers is 60 and 57 kDa for A. nidulans and 55 and 53 kDa for A. niger. Both enzymes exhibited strict specificity towards both substrates glucose 6-phosphate and NADP+. The A. nidulans and A. niger G6PD enzymes catalyse the conversion of glucose 6-phosphate via a random order mechanism. Inhibition studies provided evidence for the physiological role of G6PD as producer of NADPH in both fungi.

葡萄糖-6-磷酸脱氢酶;采用亲和层析和阴离子交换层析相结合的方法,从黑曲霉和黑曲霉中纯化出d -葡萄糖6-磷酸:NADP+氧化还原酶(EC 1.1.1.49)。获得了500-1000倍的纯化,最终的酶制剂被证明是纯的,但不均匀。对于这两种真菌,纯化后的酶制剂在天然凝胶和变性凝胶上都有两条条带。催化活性形式为多聚体。单分子质量为60和57 kDa,黑曲霉为55和53 kDa。这两种酶对葡萄糖6-磷酸和NADP+都有严格的特异性。黑曲霉和黑曲霉G6PD酶通过随机顺序机制催化葡萄糖6-磷酸的转化。抑制研究为G6PD在两种真菌中产生NADPH的生理作用提供了证据。
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引用次数: 22
Diversity of Bacillus thuringiensis environmental isolates showing larvicidal activity specific for mosquitoes. 苏云金芽孢杆菌环境分离株对蚊虫具有特异性杀幼虫活性的多样性。
Pub Date : 1993-11-01 DOI: 10.1099/00221287-139-11-2849
T Ishii, M Ohba

Seven mosquito-specific strains of Bacillus thuringiensis isolated in Japan were examined for their flagellar (H) antigenicities and the properties of parasporal inclusion proteins. They were assigned to six H serovars: serovar fukuokaensis (H 3ade); serovar canadensis (H 5ac); serovar darmstadiensis (H 10); serovar kyushuensis (H 11ac); serovar shandongiensis (H 22); and an undescribed serovar belonging to H serotype 20. Purified parasporal inclusions exhibited moderate mosquito larvicidal activities with LC50 values ranging from 1 microgram ml-1 to 10 micrograms ml-1. The inclusions of these strains consisted of highly heterogeneous multiple protein components, and five distinct patterns were evident in their SDS-PAGE profiles. Antibodies against kyushuensis inclusion proteins were reactive with all strains to varying degrees, while israelensis antibodies gave only relatively weak reactions with the seven strains. Similarity in antibody-binding profiles was associated with similarity in SDS-PAGE profiles. In a given strain, different antisera gave altered immunoblot profiles. Haemolytic activity was shown by solubilized parasporal inclusion proteins of five of the seven strains.

对日本分离的7株苏云金芽孢杆菌的鞭毛(H)抗原性和副孢子包涵蛋白的性质进行了检测。他们被分配到6个H血清型:福冈血清型(h3ade);加拿大血清型(h5ac);达姆斯塔氏血清型(h10);九州血清(h11ac);山东种(h22);以及属于H血清型20的未描述血清型。纯化的副孢子内含物具有中等的杀蚊活性,LC50值在1 ~ 10微克ml-1之间。这些菌株的内含物由高度异质性的多种蛋白质组分组成,SDS-PAGE图谱显示出五种不同的模式。针对九州菌包涵蛋白的抗体对所有菌株均有不同程度的反应,而针对以色列菌包涵蛋白的抗体对7株菌株的反应较弱。抗体结合谱的相似性与SDS-PAGE谱的相似性相关。在给定的菌株中,不同的抗血清给出了改变的免疫印迹谱。7株菌株中有5株的溶样孢子包涵蛋白显示出溶血活性。
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引用次数: 49
The draTG gene region of Rhodobacter capsulatus is required for post-translational regulation of both the molybdenum and the alternative nitrogenase. 荚膜红杆菌(Rhodobacter capsulatus)的draTG基因区域对钼酶和替代氮酶的翻译后调控都是必需的。
Pub Date : 1993-11-01 DOI: 10.1099/00221287-139-11-2667
B Masepohl, R Krey, W Klipp

Synthetic oligonucleotides, which were designed according to amino acid sequences conserved between Rhodospirillum rubrum and Azospirillum brasilense DraT and DraG, respectively, were used to identify the corresponding genes of Rhodobacter capsulatus. Sequence analysis of a 1904 bp DNA fragment proved the existence of R. capsulatus draT and draG. These two genes were separated by 11 bp only, suggesting that R. capsulatus draT and draG were part of one transcriptional unit. In contrast to R. rubrum, A. brasilense and Azospirillum lipoferum, the R. capsulatus draTG genes were not located upstream of the structural genes of nitrogenase nifHDK but close to the dctP gene at a distance of about 1000 kb from the nifHDK genes. Deletion mutations in the draTG gene region were constructed and introduced into R. capsulatus wild-type and a nifHDK deletion strain. The resulting mutant strains were examined for post-translational regulation of the molybdenum and the alternative nitrogenase in response to ammonia and darkness. Under 'switch-off' conditions the modified (ADP-ribosylated) and the non-modified forms of component II of both the molybdenum and the alternative nitrogenase were detected in a draTG wild-type background by immunoblot analysis, whereas only the non-modified forms were present in the draTG deletion strains. Nitrogenase activity in these strains was followed by the acetylene reduction assay. In contrast to the wild-type, draTG mutants were not affected in nitrogenase activity in response to ammonia or darkness. These results demonstrated that the draTG genes are required for post-translational regulation of both the molybdenum and the heterometal-free nitrogenase in R. capsulatus.

根据红红螺旋菌和巴西偶氮螺旋菌之间的氨基酸保守序列分别设计合成寡核苷酸DraT和DraG,鉴定荚膜红杆菌的相应基因。对一个194bp的DNA片段进行序列分析,证实了荚膜霉霉draT和draG的存在。这两个基因仅相隔11 bp,表明荚膜霉的draT和draG是一个转录单位的一部分。与rubruum、a . brasilense和Azospirillum lipoferum相比,荚膜菌draTG基因并不位于nifHDK结构基因的上游,而是位于dctP基因附近,距离nifHDK基因约1000 kb。构建了draTG基因区域的缺失突变,并将其引入荚膜菌野生型和nifHDK缺失菌株。我们检测了突变株在氨和黑暗条件下对钼和替代氮酶的翻译后调控。在“关闭”条件下,通过免疫印迹分析,在draTG野生型背景下检测到钼和替代氮酶组分II的修饰形式(adp核糖基化)和非修饰形式,而在draTG缺失菌株中仅存在非修饰形式。用乙炔还原法测定了这些菌株的氮酶活性。与野生型相比,draTG突变体的氮酶活性不受氨和黑暗的影响。这些结果表明,draTG基因在荚膜霉钼酶和无异金属氮酶的翻译后调控中都是必需的。
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引用次数: 77
Stimulation of genetic instability in Streptomyces ambofaciens ATCC 23877 by antibiotics that interact with DNA gyrase. 与DNA旋切酶相互作用的抗生素对双歧链霉菌ATCC 23877遗传不稳定性的刺激
Pub Date : 1993-11-01 DOI: 10.1099/00221287-139-11-2551
J N Volff, D Vandewiele, J M Simonet, B Decaris

In wild-type Streptomyces ambofaciens ATCC 23877, pigment-defective (Pig-) mutants arise at a frequency of about 0.5%; this genetic instability is related to genomic rearrangements such as deletions and/or amplifications of DNA sequences. On media containing oxolinic acid and novobiocin, which interact with the A and B subunits of DNA gyrase, respectively, the frequency of variants increased dramatically. The Pig- mutant frequency was increased to almost 100% on a medium containing oxolinic acid at a concentration allowing 55% survival. On solid medium containing either oxolinic acid or novobiocin at subinhibitory concentrations, most colonies exhibited a 'patchwork' phenotype, characterized by the presence of numerous Pig- sectors. Similar phenomena were not observed on media containing the transcriptional inhibitor rifampicin or the translational inhibitor streptomycin. Many of the Pig- mutants exhibited a pleiotropic phenotype and were affected in aerial mycelium formation, colony growth and/or prototrophy. Moreover, the same kinds of rearrangements (deletions and/or amplifications of DNA sequences) were found in both induced and spontaneous Pig- mutants. The results suggest either that DNA gyrase is directly involved in genetic instability or that an SOS-like system is implicated.

在野生型双歧杆菌链霉菌ATCC 23877中,色素缺陷(Pig-)突变体的发生率约为0.5%;这种遗传不稳定性与基因组重排有关,如DNA序列的缺失和/或扩增。在含有草酸和新生物素的培养基上,变异的频率显著增加,它们分别与DNA旋切酶的A亚基和B亚基相互作用。在含有氧喹啉酸的培养基中,猪突变体的频率增加到几乎100%,存活率为55%。在含有亚抑制浓度的草酸或新生物素的固体培养基上,大多数菌落表现出“拼凑”表型,其特征是存在许多猪区。在含有转录抑制剂利福平或翻译抑制剂链霉素的培养基中没有观察到类似的现象。许多猪-突变体表现出多效表型,并在空中菌丝形成、菌落生长和/或原生营养方面受到影响。此外,在诱导和自发的猪突变体中发现了相同类型的重排(DNA序列的缺失和/或扩增)。结果表明,要么DNA旋切酶直接参与遗传不稳定性,要么涉及一个类似sos的系统。
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引用次数: 15
Albumin-binding proteins on the surface of the Streptococcus milleri group and characterization of the albumin receptor of Streptococcus intermedius C5. 米勒氏链球菌群表面白蛋白结合蛋白及中间链球菌C5白蛋白受体的表征。
Pub Date : 1993-10-01 DOI: 10.1099/00221287-139-10-2451
M D Willcox, M Patrikakis, C Y Loo, K W Knox

Members of the Streptococcus milleri group (SMG) that react with Lancefield group C antisera were shown to bind large amounts of albumin although there was no direct relation between these two properties as polyclonal antisera to Lancefield group C antigen did not prevent the binding of albumin. There was a specificity for albumin binding, with albumin from man, monkeys, cat, dog and mouse being bound to a greater degree than albumin from cow, horse, goat or rabbit. Gold-labelled albumin was shown to be located close to the surface of strains by transmission electron microscopy. A cell-surface protein of M(r) 24,000, which was liberated by lysozyme treatment of cells, was shown to be the cell-surface receptor on Streptococcus intermedius C5. The receptor was physically dissimilar from protein G, an albumin- and IgG-binding protein of 'large-colony' Lancefield group C and G streptococci.

与Lancefield C组抗血清反应的米勒链球菌组(SMG)成员被证明能结合大量白蛋白,尽管这两种性质之间没有直接关系,因为Lancefield C组抗原的多克隆抗血清不能阻止白蛋白的结合。对白蛋白的结合具有特异性,人、猴、猫、狗和小鼠的白蛋白的结合程度大于牛、马、山羊和兔的白蛋白。透射电镜显示,金标记白蛋白位于菌株表面附近。通过溶菌酶处理细胞释放的M(r) 24000细胞表面蛋白被证明是中间链球菌C5的细胞表面受体。该受体在物理上与蛋白质G不同,蛋白质G是“大菌落”兰斯菲尔德C群和G链球菌的白蛋白和igg结合蛋白。
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引用次数: 18
Proteolysis and orientation in Dictyostelium slugs. 盘齿钢门蛞蝓的蛋白质水解与取向。
Pub Date : 1993-10-01 DOI: 10.1099/00221287-139-10-2319
J T Bonner

It has been long known that the migrating slugs of the cellular slime moulds are highly sensitive to their environment and orient towards light and in temperature and chemical gradients. There is considerable evidence from past work that these orientations are governed by NH3 which affects the rate of movement of cells within the slug with such precision that orientation to the external stimuli is achieved. In order to test this hypothesis further, various ways to alter the internal NH3 concentration were devised. Substances that either increased or decreased proteolysis were applied to one side of the tip of a slug, thereby affecting its orientation. Some of the treatments strongly support the role of internally produced NH3 in orientation, and all the treatments produce results that are consistent with the hypothesis.

人们早就知道,细胞黏菌的迁徙鼻涕虫对环境高度敏感,并在温度和化学梯度上对光和方向敏感。从过去的工作中有相当多的证据表明,这些方向是由NH3控制的,NH3可以精确地影响鼻涕虫内细胞的运动速度,从而实现对外部刺激的定向。为了进一步验证这一假设,设计了各种改变内部NH3浓度的方法。将增加或减少蛋白质水解的物质应用于鼻涕虫尖端的一侧,从而影响其方向。一些处理强烈支持内部产生的NH3在定向中的作用,所有处理产生的结果都与假设一致。
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引用次数: 15
The distribution of the outer gas vesicle protein, GvpC, on the Anabaena gas vesicle, and its ratio to GvpA. 外囊泡蛋白GvpC在水藻囊泡上的分布及其与GvpA的比值。
Pub Date : 1993-10-01 DOI: 10.1099/00221287-139-10-2353
B E Buchholz, P K Hayes, A E Walsby

Previous studies have shown that gas vesicles isolated from the cyanobacterium Anabaena flos-aquae contain two types of protein, GvpA, a small hydrophobic protein that forms the main ribbed structure, and GvpC, a protein comprising five repeats of a 33-amino-acid-residue motif, which is located on the outer surface of the GvpA shell. GvpC was shown to increase the critical collapse pressure of the gas vesicles; it was thought to do this by forming a series of molecular ties that bind the ribs together. We now show that antibodies raised against GvpC label both the central cylinders and the conical end caps of native gas vesicles but fail to bind to gas vesicles that have been stripped of GvpC. The molar ratio of GvpA to GvpC has been calculated from amino acid analyses of gas vesicle hydrolysates by reference to the abundance of amino acids that occur predominantly or exclusively in one protein or the other; the molar ratio was found to be 25:1 in freshly isolated gas vesicles and 23:1 in gas vesicles saturated with GvpC. We have considered three ways in which the 33-residue repeats of GvpC might interact with the crystallographic unit cell of GvpA molecules in the ribs. The Anabaena GvpC will bind to and restore the strength of gas vesicles isolated from Aphanizomenon and Microcystis that lack their native GvpC.

先前的研究表明,从蓝藻水藻中分离出的气体囊泡含有两种类型的蛋白质,GvpA是一种形成主要肋状结构的小疏水性蛋白质,GvpC是一种由位于GvpA外壳外表面的33个氨基酸残基基序的5个重复组成的蛋白质。GvpC增加了气体囊泡的临界崩溃压力;它被认为是通过形成一系列分子纽带将肋骨连接在一起来做到这一点的。我们现在表明,针对GvpC提出的抗体可以标记天然气体囊泡的中心圆柱体和锥形端帽,但不能与已经剥离GvpC的气体囊泡结合。GvpA与GvpC的摩尔比是通过参考主要或只存在于一种蛋白质或另一种蛋白质中的氨基酸丰度,从气囊泡水解物的氨基酸分析中计算出来的;新分离的气体囊泡的摩尔比为25:1,饱和GvpC的气体囊泡的摩尔比为23:1。我们考虑了GvpC的33个残基重复序列可能与肋中GvpA分子的晶体学单位细胞相互作用的三种方式。Anabaena GvpC将结合并恢复从缺乏原生GvpC的aphanizomens和Microcystis分离的气泡的强度。
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引用次数: 36
Cloning, nucleotide sequence and characterization of the mannitol dehydrogenase gene from Rhodobacter sphaeroides. 球形红杆菌甘露醇脱氢酶基因的克隆、核苷酸序列及特性分析。
Pub Date : 1993-10-01 DOI: 10.1099/00221287-139-10-2475
K H Schneider, F Giffhorn, S Kaplan

Transposon mutagenesis and antibiotic enrichment were employed to isolate a mutant of Rhodobacter sphaeroides Si4 designated strain M22, that had lost the ability to grow on D-mannitol and to produce the enzyme mannitol dehydrogenase (MDH). DNA flanking the transposon in the mutant strain was used as a probe for the identification and cloning of the MDH gene (mtlK). A 5.5 kb EcoRI/BglII fragment from R. sphaeroides Si4 was isolated and shown to complement the mutation in R. sphaeroides M22. Successful complementation required that a promoter of the vector-plasmid pRK415 be present, suggesting that the mtlK gene is part of a larger operon. Using oligonucleotides derived from the N-terminal sequence of MDH as probes mtlK was located on the complementing fragment and the gene was sequenced. The mtlK open reading frame encodes a protein of 51,404 Da with an N-terminal sequence identical to that obtained from amino acid analysis of the purified MDH. The MDH of R. sphaeroides Si4 exhibits distant similarity to the mannitol-1-phosphate dehydrogenases from Escherichia coli and Enterococcus faecalis, with 28.1% and 26.3% identity, respectively. Mutant strains deficient in MtlK displayed substantial levels of sorbitol dehydrogenase activity, originally thought to be only a minor activity associated with the MDH enzyme. It is likely that we have uncovered an additional polyol dehydrogenase with activity for sorbitol. The mtlK gene can be used for overexpression of MDH in E. coli in order to obtain sufficient amounts of enzyme for further investigations and applications.

利用转座子诱变和抗生素富集分离出球形红杆菌Si4指定菌株M22,该菌株失去了在d -甘露醇上生长和产生甘露醇脱氢酶(MDH)的能力。利用突变株转座子侧翼的DNA作为探针,对MDH基因(mtlK)进行鉴定和克隆。从sphaeroides Si4中分离出一个5.5 kb的EcoRI/BglII片段,与sphaeroides M22中的突变互补。成功的互补需要载体质粒pRK415的启动子存在,这表明mtlK基因是一个更大的操纵子的一部分。利用MDH n端序列衍生的寡核苷酸作为探针,将mtlK定位在互补片段上,并对该基因进行测序。mtlK开放阅读框编码一个51,404 Da的蛋白,其n端序列与纯化MDH的氨基酸分析结果相同。sphaeroides Si4的MDH与大肠杆菌和粪肠球菌的甘露醇-1-磷酸脱氢酶具有较远的相似性,其同源性分别为28.1%和26.3%。缺乏MtlK的突变株显示出大量的山梨糖醇脱氢酶活性,最初认为这只是与MDH酶相关的少量活性。很可能我们已经发现了另外一种具有山梨醇活性的多元醇脱氢酶。mtlK基因可用于MDH在大肠杆菌中的过表达,以获得足够量的酶用于进一步的研究和应用。
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引用次数: 47
Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype. 犬类新种犬幽门螺杆菌:表型与基因型的综合研究。
Pub Date : 1993-10-01 DOI: 10.1099/00221287-139-10-2495
J Stanley, D Linton, A P Burnens, F E Dewhirst, R J Owen, A Porter, S L On, M Costas

A group of Campylobacter-like organisms (CLOs) were isolated from the faeces of diarrhoeic or healthy dogs, constituting 4% of all CLOs from this source. Since they formed a unique DNA homology group within the genus Helicobacter, and exhibited distinctive phenotypic properties, they were collectively termed the HC group. A polyphasic taxonomic analysis was made of this group. The phenotype of four dog isolates and a single human isolate was unique and could be distinguished bacteriologically from other helicobacters. Electron microscopic ultrastructure revealed defining characteristics of Helicobacter. The 16S rRNA gene of the nominated type strain NCTC 12739T was sequenced, and its analysis delineated the group as a new species of Helicobacter. This conclusion was supported by relative DNA homology and whole-cell protein electrophoretic patterns. We therefore propose the name Helicobacter canis sp. nov. for this group. The species most closely related to H. canis sp. nov. were H. cinaedi, 'Flexispira rappini' and H. fennelliae. A species-specific recombinant DNA probe was cloned from NCTC 12739T for use in routine laboratory identification and epidemiological studies. The faecal source, bile tolerance and lack of urease activity of H. canis sp. nov. suggest that this new Helicobacter species colonizes the lower bowel rather than the stomach.

从腹泻或健康犬的粪便中分离出一组弯曲杆菌样生物(CLOs),占来自该来源的所有CLOs的4%。由于它们在幽门螺杆菌属中形成了独特的DNA同源群,并表现出独特的表型特性,因此它们被统称为HC群。对该类群进行了多相分类分析。4个犬分离株和1个人分离株的表型是独特的,可以从细菌学上与其他幽门螺杆菌区分开来。电镜超微结构揭示了幽门螺杆菌的特征。命名型菌株NCTC 12739T的16S rRNA基因测序结果表明,该菌株为幽门螺杆菌新种。这一结论得到了相对DNA同源性和全细胞蛋白电泳图谱的支持。因此,我们建议将这一类群命名为犬幽门螺杆菌。与11月猿类亲缘关系最密切的种是中华猿类、rappini Flexispira和fennelliae。从nct12739t中克隆出一种具有物种特异性的重组DNA探针,用于实验室常规鉴定和流行病学研究。犬门螺杆菌的粪便来源、胆汁耐受性和缺乏脲酶活性表明,这种新的幽门螺杆菌是在下肠而不是胃中定居的。
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引用次数: 159
期刊
Journal of general microbiology
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