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Mass Spectrometry–Based Proteomics in Clinical Diagnosis of Amyloidosis and Multiple Myeloma: A Review (2012–2024)
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-19 DOI: 10.1002/jms.5116
Katerina Kratka, Pavel Sistik, Ivana Olivkova, Pavlina Kusnierova, Zdenek Svagera, David Stejskal

Proteomics is nowadays increasingly becoming part of the routine clinical practice of diagnostic laboratories, especially due to the advent of advanced mass spectrometry techniques. This review focuses on the application of proteomic analysis in the identification of pathological conditions in a hospital setting, with a particular focus on the analysis of protein biomarkers. In particular, the main purpose of the review is to highlight the challenges associated with the identification of specific disease-causing proteins, given their complex nature and the variety of posttranslational modifications (PTMs) they can undergo. PTMs, such as phosphorylation and glycosylation, play critical roles in protein function but can also lead to diseases if dysregulated. Proteomics plays an important role especially in various medical fields ranging from cardiology, internal medicine to hemato-oncology emphasizing the interdisciplinary nature of this field. Traditional methods such as electrophoretic or immunochemical methods have been mainstay in protein detection; however, these techniques are limited in terms of specificity and sensitivity. Examples include the diagnosis of multiple myeloma and the detection of its specific protein or amyloidosis, which relies heavily on these conventional methods, which sometimes lead to false positives or inadequate disease monitoring. Mass spectrometry in this respect emerges as a superior alternative, providing high sensitivity and specificity in the detection and quantification of specific protein sequences. This technique is particularly beneficial for monitoring minimal residual disease (MRD) in the diagnosis of multiple myeloma where traditional methods fall short. Furthermore mass spectrometry can provide precise typing of amyloid proteins, which is crucial for the appropriate treatment of amyloidosis. This review summarizes the opportunities for proteomic determination using mass spectrometry between 2012 and 2024, highlighting the transformative potential of mass spectrometry in clinical proteomics and encouraging its wider use in diagnostic laboratories.

{"title":"Mass Spectrometry–Based Proteomics in Clinical Diagnosis of Amyloidosis and Multiple Myeloma: A Review (2012–2024)","authors":"Katerina Kratka,&nbsp;Pavel Sistik,&nbsp;Ivana Olivkova,&nbsp;Pavlina Kusnierova,&nbsp;Zdenek Svagera,&nbsp;David Stejskal","doi":"10.1002/jms.5116","DOIUrl":"https://doi.org/10.1002/jms.5116","url":null,"abstract":"<p>Proteomics is nowadays increasingly becoming part of the routine clinical practice of diagnostic laboratories, especially due to the advent of advanced mass spectrometry techniques. This review focuses on the application of proteomic analysis in the identification of pathological conditions in a hospital setting, with a particular focus on the analysis of protein biomarkers. In particular, the main purpose of the review is to highlight the challenges associated with the identification of specific disease-causing proteins, given their complex nature and the variety of posttranslational modifications (PTMs) they can undergo. PTMs, such as phosphorylation and glycosylation, play critical roles in protein function but can also lead to diseases if dysregulated. Proteomics plays an important role especially in various medical fields ranging from cardiology, internal medicine to hemato-oncology emphasizing the interdisciplinary nature of this field. Traditional methods such as electrophoretic or immunochemical methods have been mainstay in protein detection; however, these techniques are limited in terms of specificity and sensitivity. Examples include the diagnosis of multiple myeloma and the detection of its specific protein or amyloidosis, which relies heavily on these conventional methods, which sometimes lead to false positives or inadequate disease monitoring. Mass spectrometry in this respect emerges as a superior alternative, providing high sensitivity and specificity in the detection and quantification of specific protein sequences. This technique is particularly beneficial for monitoring minimal residual disease (MRD) in the diagnosis of multiple myeloma where traditional methods fall short. Furthermore mass spectrometry can provide precise typing of amyloid proteins, which is crucial for the appropriate treatment of amyloidosis. This review summarizes the opportunities for proteomic determination using mass spectrometry between 2012 and 2024, highlighting the transformative potential of mass spectrometry in clinical proteomics and encouraging its wider use in diagnostic laboratories.</p>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jms.5116","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143439066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CID-Induced Formation of Deprotonated Cyclic Peptide Ions From Anionic Adducts
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-18 DOI: 10.1002/jms.5114
Maciej Modzel, Piotr Stefanowicz

MS analysis of cyclic peptides in negative ion mode has been a challenge, in particular if the peptide does not contain acidic functional groups. In this paper, we present a way to easily produce negative ions from anionic peptide adducts, utilising collision-induced dissociation (CID)-mediated elimination. Using two different mass spectrometers, we have generated series of adducts of three cyclic and one linear peptide with various anions. They were then isolated and subjected to CID with a range of collision energies. The deprotonation percentage was then calculated from the resultant spectrum, and compared between the spectrometers, as well as with an external reference—proton affinity values. The susceptibility to deprotonate by detaching a HX moiety is proportional to the proton affinity of the X species. Also, the linear peptide deprotonated more readily than the cyclic ones. On the other hand, lack of amino or acidic groups resulted in higher collision voltage (CV) necessary for the formation of deprotonated species. Moreover, the exact propensity for neutral loss depends on the ion temperature, which differs between mass spectrometers. We have developed a facile method for generating peptide anions for MS analysis of cyclic peptides, which works even if the peptide in question does not have easily ionisable groups. The deprotonated species generated in this way can be fragmented again in order to identify the peptide.

{"title":"CID-Induced Formation of Deprotonated Cyclic Peptide Ions From Anionic Adducts","authors":"Maciej Modzel,&nbsp;Piotr Stefanowicz","doi":"10.1002/jms.5114","DOIUrl":"https://doi.org/10.1002/jms.5114","url":null,"abstract":"<div>\u0000 \u0000 <p>MS analysis of cyclic peptides in negative ion mode has been a challenge, in particular if the peptide does not contain acidic functional groups. In this paper, we present a way to easily produce negative ions from anionic peptide adducts, utilising collision-induced dissociation (CID)-mediated elimination. Using two different mass spectrometers, we have generated series of adducts of three cyclic and one linear peptide with various anions. They were then isolated and subjected to CID with a range of collision energies. The deprotonation percentage was then calculated from the resultant spectrum, and compared between the spectrometers, as well as with an external reference—proton affinity values. The susceptibility to deprotonate by detaching a HX moiety is proportional to the proton affinity of the X<sup>−</sup> species. Also, the linear peptide deprotonated more readily than the cyclic ones. On the other hand, lack of amino or acidic groups resulted in higher collision voltage (CV) necessary for the formation of deprotonated species. Moreover, the exact propensity for neutral loss depends on the ion temperature, which differs between mass spectrometers. We have developed a facile method for generating peptide anions for MS analysis of cyclic peptides, which works even if the peptide in question does not have easily ionisable groups. The deprotonated species generated in this way can be fragmented again in order to identify the peptide.</p>\u0000 </div>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143439090","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of Mid-Infrared and Ultraviolet Lasers Coupled to the MALDESI Source for the Detection of Secondary Metabolites and Structural Lipids in Arabidopsis thaliana
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-18 DOI: 10.1002/jms.5118
Sarah M. Ashbacher, Jeffrey G. Manni, David C. Muddiman

Matrix-assisted laser desorption electrospray ionization (MALDESI) conventionally utilizes a mid-infrared (IR) laser for the desorption of neutrals, allowing for detection of hundreds to thousands of analytes simultaneously. This platform enables mass spectrometry imaging (MSI) capabilities to not only detect specific molecules but also reveal the distribution and localization of a wide range of biomolecules across an organism. However, an IR laser comes with its disadvantages when imaging plants. At a mid-IR wavelength (2970 nm), the compartmentalized endogenous water within the leaf structure acts as an internal matrix, causing rapid heating, and, in turn, degrades the spatial resolution and signal quality. An ultraviolet (UV) laser operates at wavelengths that overlap with the absorption bands of secondary metabolites allowing them to serve as sacrificial matrix molecules. With the integration and optimization of a 355 nm UV laser into the MALDESI-MSI NextGen source for the analysis of plants, we were able to detect diverse molecular classes including flavonoids, fatty acid derivatives, galactolipids, and glucosinolates, at higher ion abundances when compared to the mid-IR laser. These results show that re-visiting UV-MALDESI-MSI, without the need for an exogenous matrix, provides a promising approach for the detection and imaging of important analytes in plants.

{"title":"Comparison of Mid-Infrared and Ultraviolet Lasers Coupled to the MALDESI Source for the Detection of Secondary Metabolites and Structural Lipids in Arabidopsis thaliana","authors":"Sarah M. Ashbacher,&nbsp;Jeffrey G. Manni,&nbsp;David C. Muddiman","doi":"10.1002/jms.5118","DOIUrl":"https://doi.org/10.1002/jms.5118","url":null,"abstract":"<p>Matrix-assisted laser desorption electrospray ionization (MALDESI) conventionally utilizes a mid-infrared (IR) laser for the desorption of neutrals, allowing for detection of hundreds to thousands of analytes simultaneously. This platform enables mass spectrometry imaging (MSI) capabilities to not only detect specific molecules but also reveal the distribution and localization of a wide range of biomolecules across an organism. However, an IR laser comes with its disadvantages when imaging plants. At a mid-IR wavelength (2970 nm), the compartmentalized endogenous water within the leaf structure acts as an internal matrix, causing rapid heating, and, in turn, degrades the spatial resolution and signal quality. An ultraviolet (UV) laser operates at wavelengths that overlap with the absorption bands of secondary metabolites allowing them to serve as sacrificial matrix molecules. With the integration and optimization of a 355 nm UV laser into the MALDESI-MSI NextGen source for the analysis of plants, we were able to detect diverse molecular classes including flavonoids, fatty acid derivatives, galactolipids, and glucosinolates, at higher ion abundances when compared to the mid-IR laser. These results show that re-visiting UV-MALDESI-MSI, without the need for an exogenous matrix, provides a promising approach for the detection and imaging of important analytes in plants.</p>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jms.5118","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143431584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Minimizing Variable Downhole Fractionation in U–Pb Zircon Geochronology by LA-MC-ICP-MS at Smaller Spot Size
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-18 DOI: 10.1002/jms.5115
Saurabh Singhal, Sandeep Singh, Dharmendra Singh

The development of LA-ICPMS and LA-MC-ICPMS resulted in analytical methods for zircon geochronology using a 20- to 60-μm laser spot size. A high amount of complexly zoned zircons promotes the requirement of U–Pb dating at smaller spot sizes. When spot size reduces, downhole fractionation (DHF) increases, increasing the DHF discrepancy between zircon grains and the primary reference zircon standard and resulting in inaccurate results. With MC-ICPMS's high sensitivity and multi-collector capabilities, this work attempts to accurately determine age with spatial resolutions below 20 μm. Three well-characterized zircon standards (91500, GJ-1, and Plešovice) were tested at spot sizes of 35, 20, 15, and 10 μm. Laser and mass spectrometry tuning, laser shot count, and ablation time have been optimized to reduce the DHF effect on measurement accuracy. Static ablation of 35- to 15-μm spots with 150 laser shot counts (30 s) yielded precision of less than 1.5% and age offset of less than 2%. The DHF differs significantly from the reference standard and two test zircon samples used for validation, with an age offset of 4% at 10-μm spot sizes. Masking shot counts from the end enhanced accuracy, notably for lower laser shot counts and shorter ablation times. At 75 laser shot counts, precision reached 1.4% and age offsets reduced to 1.6% for 206Pb/238U age. This method minimizes laser shot counts to avoid sampling two age groups. Higher zircon DHF variability at smaller spot sizes may influence a well-calibrated, sensitive LA-MC-ICP-MS analytical figure of merit.

{"title":"Minimizing Variable Downhole Fractionation in U–Pb Zircon Geochronology by LA-MC-ICP-MS at Smaller Spot Size","authors":"Saurabh Singhal,&nbsp;Sandeep Singh,&nbsp;Dharmendra Singh","doi":"10.1002/jms.5115","DOIUrl":"https://doi.org/10.1002/jms.5115","url":null,"abstract":"<div>\u0000 \u0000 <p>The development of LA-ICPMS and LA-MC-ICPMS resulted in analytical methods for zircon geochronology using a 20- to 60-μm laser spot size. A high amount of complexly zoned zircons promotes the requirement of U–Pb dating at smaller spot sizes. When spot size reduces, downhole fractionation (DHF) increases, increasing the DHF discrepancy between zircon grains and the primary reference zircon standard and resulting in inaccurate results. With MC-ICPMS's high sensitivity and multi-collector capabilities, this work attempts to accurately determine age with spatial resolutions below 20 μm. Three well-characterized zircon standards (91500, GJ-1, and Plešovice) were tested at spot sizes of 35, 20, 15, and 10 μm. Laser and mass spectrometry tuning, laser shot count, and ablation time have been optimized to reduce the DHF effect on measurement accuracy. Static ablation of 35- to 15-μm spots with 150 laser shot counts (30 s) yielded precision of less than 1.5% and age offset of less than 2%. The DHF differs significantly from the reference standard and two test zircon samples used for validation, with an age offset of 4% at 10-μm spot sizes. Masking shot counts from the end enhanced accuracy, notably for lower laser shot counts and shorter ablation times. At 75 laser shot counts, precision reached 1.4% and age offsets reduced to 1.6% for <sup>206</sup>Pb/<sup>238</sup>U age. This method minimizes laser shot counts to avoid sampling two age groups. Higher zircon DHF variability at smaller spot sizes may influence a well-calibrated, sensitive LA-MC-ICP-MS analytical figure of merit.</p>\u0000 </div>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143439092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanistic Insights Into the Dissociative Photoionization Pathways of Ethyl Propionate: A Combined Experimental and Theoretical Approach
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-17 DOI: 10.1002/jms.5119
Huanhuan Wang, Xiaobin Shan, Fuyi Liu, Zhenya Wang, Liusi Sheng, Ran Sui

Ethyl propionate (C5H10O2, EP) has been extensively studied in the fields of biofuels and atmospheric chemistry. However, its vacuum ultraviolet (VUV) photoionization has not been investigated. This study examines the photoionization process of EP using tunable VUV synchrotron radiation, coupled with a reflectron time-of-flight mass spectrometer. This method yielded the photoionization mass spectrum of EP and photoionization efficiency (PIE) spectra of 10 identified fragment ions (i.e., C4H7O2+., C3H7O2+., C3H6O2+., C3H5O2+., C3H6O+., C3H5O+., C3H4O+., C2H5O+., C2H5+., and C2H4+.). The results, interpreted with the aid of high-accuracy theoretical calculations, conclude possible formation mechanisms for each fragment ion. In the dissociation pathway of EP's cation, intramolecular hydrogen shifts and bond cleavage are the predominant processes. The C3H7O2+. and C2H4+. reaction channels do not arise from one-step bond cleavage, but their reaction energy barriers are influenced by product energy, making them comparable to direct reaction channels. The active reaction sites within the molecules are elucidated using Laplacian bond order (LBO). Rate constants are calculated using RRKM theory, which confirms the kinetic factors governing the EP reaction process. This study provides a detailed understanding of the photoionization and dissociation of the main ions of EP within the 9.35–15.50 eV photon energy range.

{"title":"Mechanistic Insights Into the Dissociative Photoionization Pathways of Ethyl Propionate: A Combined Experimental and Theoretical Approach","authors":"Huanhuan Wang,&nbsp;Xiaobin Shan,&nbsp;Fuyi Liu,&nbsp;Zhenya Wang,&nbsp;Liusi Sheng,&nbsp;Ran Sui","doi":"10.1002/jms.5119","DOIUrl":"https://doi.org/10.1002/jms.5119","url":null,"abstract":"<div>\u0000 \u0000 <p>Ethyl propionate (C<sub>5</sub>H<sub>10</sub>O<sub>2</sub>, EP) has been extensively studied in the fields of biofuels and atmospheric chemistry. However, its vacuum ultraviolet (VUV) photoionization has not been investigated. This study examines the photoionization process of EP using tunable VUV synchrotron radiation, coupled with a reflectron time-of-flight mass spectrometer. This method yielded the photoionization mass spectrum of EP and photoionization efficiency (PIE) spectra of 10 identified fragment ions (i.e., C<sub>4</sub>H<sub>7</sub>O<sub>2</sub><sup>+.</sup>, C<sub>3</sub>H<sub>7</sub>O<sub>2</sub><sup>+.</sup>, C<sub>3</sub>H<sub>6</sub>O<sub>2</sub><sup>+.</sup>, C<sub>3</sub>H<sub>5</sub>O<sub>2</sub><sup>+.</sup>, C<sub>3</sub>H<sub>6</sub>O<sup>+.</sup>, C<sub>3</sub>H<sub>5</sub>O<sup>+.</sup>, C<sub>3</sub>H<sub>4</sub>O<sup>+.</sup>, C<sub>2</sub>H<sub>5</sub>O<sup>+.</sup>, C<sub>2</sub>H<sub>5</sub><sup>+.</sup>, and C<sub>2</sub>H<sub>4</sub><sup>+.</sup>). The results, interpreted with the aid of high-accuracy theoretical calculations, conclude possible formation mechanisms for each fragment ion. In the dissociation pathway of EP's cation, intramolecular hydrogen shifts and bond cleavage are the predominant processes. The C<sub>3</sub>H<sub>7</sub>O<sub>2</sub><sup>+.</sup> and C<sub>2</sub>H<sub>4</sub><sup>+.</sup> reaction channels do not arise from one-step bond cleavage, but their reaction energy barriers are influenced by product energy, making them comparable to direct reaction channels. The active reaction sites within the molecules are elucidated using Laplacian bond order (LBO). Rate constants are calculated using RRKM theory, which confirms the kinetic factors governing the EP reaction process. This study provides a detailed understanding of the photoionization and dissociation of the main ions of EP within the 9.35–15.50 eV photon energy range.</p>\u0000 </div>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143423834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Zn(II) Affinity and Structural Conformations of 2His-2Cys Zinc Finger-Like Motif Peptide Determined by Ion Mobility–Mass Spectrometry and PM6 Molecular Modeling
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-14 DOI: 10.1002/jms.5113
Richmond A. Adomako, Michael B. Owusu, Rebekah K. Oberdick, Kwabena Senyah, Perfect Asare, Riccardo Spezia, Laurence A. Angel

This study focuses on investigating the conformational structure and zinc(II) affinity of a zinc finger-like motif (ZFM) peptide with the sequence acetyl-His1-Cys2-Gly3-Pro4-Gly5-His6-Cys7, where bold highlights the potential zinc(II) binding sites. Zinc fingers are crucial protein motifs known for their high specificity and affinity for zinc ions. The ZFM peptide's sequence contains the 2His-2Cys zinc-binding sites similar to those in natural zinc finger proteins but without the hydrophobic core, making it a valuable model for studying zinc(II)–peptide interactions. Previous research on related peptides showed that collision cross sections and B3LYP modeling predicted that the His-2Cys-carboxyl terminus coordination of zinc(II) was more stable than the 2His-2Cys. Employing a comprehensive approach integrating ion mobility–mass spectrometry and theoretical modeling techniques, various zinc(II) binding modes of the ZFM have been thoroughly compared to ascertain their influence on the competitive threshold collision-induced dissociation method for measuring the relative gas-phase Zn(II) affinity of the ZFM peptide. The measured Zn(II) affinity of ZFM is greater than those measured recently for two peptides with similar primary structures, acetyl-His1-Cys2-Gly3-Pro4-Gly5-Gly6-Cys7 and acetyl-Asp1-His2-Gly3-Pro4-Gly5-Gly6-Cys7, indicating the preference for the His1-Cys2-His6-Cys7 side groups for coordinating zinc(II) over the His-2Cys-carboxyl terminus or Asp-His-Cys-carboxyl terminus in these related heptapeptides.

{"title":"Zn(II) Affinity and Structural Conformations of 2His-2Cys Zinc Finger-Like Motif Peptide Determined by Ion Mobility–Mass Spectrometry and PM6 Molecular Modeling","authors":"Richmond A. Adomako,&nbsp;Michael B. Owusu,&nbsp;Rebekah K. Oberdick,&nbsp;Kwabena Senyah,&nbsp;Perfect Asare,&nbsp;Riccardo Spezia,&nbsp;Laurence A. Angel","doi":"10.1002/jms.5113","DOIUrl":"10.1002/jms.5113","url":null,"abstract":"<div>\u0000 \u0000 <p>This study focuses on investigating the conformational structure and zinc(II) affinity of a zinc finger-like motif (ZFM) peptide with the sequence acetyl-<b>His</b><sub><b>1</b></sub><b>-Cys</b><sub><b>2</b></sub>-Gly<sub>3</sub>-Pro<sub>4</sub>-Gly<sub>5</sub>-<b>His</b><sub><b>6</b></sub><b>-Cys</b><sub><b>7</b></sub>, where bold highlights the potential zinc(II) binding sites. Zinc fingers are crucial protein motifs known for their high specificity and affinity for zinc ions. The ZFM peptide's sequence contains the 2His-2Cys zinc-binding sites similar to those in natural zinc finger proteins but without the hydrophobic core, making it a valuable model for studying zinc(II)–peptide interactions. Previous research on related peptides showed that collision cross sections and B3LYP modeling predicted that the His-2Cys-carboxyl terminus coordination of zinc(II) was more stable than the 2His-2Cys. Employing a comprehensive approach integrating ion mobility–mass spectrometry and theoretical modeling techniques, various zinc(II) binding modes of the ZFM have been thoroughly compared to ascertain their influence on the competitive threshold collision-induced dissociation method for measuring the relative gas-phase Zn(II) affinity of the ZFM peptide. The measured Zn(II) affinity of ZFM is greater than those measured recently for two peptides with similar primary structures, acetyl-<b>His</b><sub><b>1</b></sub><b>-Cys</b><sub><b>2</b></sub>-Gly<sub>3</sub>-Pro<sub>4</sub>-Gly<sub>5</sub>-Gly<sub>6</sub>-<b>Cys</b><sub><b>7</b></sub> and acetyl-<b>Asp</b><sub><b>1</b></sub>-<b>His</b><sub><b>2</b></sub>-Gly<sub>3</sub>-Pro<sub>4</sub>-Gly<sub>5</sub>-Gly<sub>6</sub>-<b>Cys</b><sub><b>7</b></sub>, indicating the preference for the His<sub>1</sub>-Cys<sub>2</sub>-His<sub>6</sub>-Cys<sub>7</sub> side groups for coordinating zinc(II) over the His-2Cys-carboxyl terminus or Asp-His-Cys-carboxyl terminus in these related heptapeptides.</p>\u0000 </div>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 3","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143414332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Erratum—Integrating DFT and CI-MS Techniques to Assess Benzophenone Derivatives in Food Packaging: Implications for Enhancing Food Quality and Safety 误误整合DFT和CI-MS技术评估食品包装中的二苯甲酮衍生物:对提高食品质量和安全的意义。
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-17 DOI: 10.1002/jms.5105
Manjeet Bhatia

The corrected enthalpy (ΔH$$ Delta mathrm{H} $$) and free energy (ΔG$$ Delta mathrm{G} $$) values for reactions of benzophenone derivatives with various CI-MS reagent ions are presented in Table 1. The values for reactions with NO+ and O2+$$ {}_2^{+} $$ have been adjusted, as they were previously overestimated in Table 2.

{"title":"Erratum—Integrating DFT and CI-MS Techniques to Assess Benzophenone Derivatives in Food Packaging: Implications for Enhancing Food Quality and Safety","authors":"Manjeet Bhatia","doi":"10.1002/jms.5105","DOIUrl":"10.1002/jms.5105","url":null,"abstract":"<p>The corrected enthalpy (<span></span><math>\u0000 <semantics>\u0000 <mrow>\u0000 <mi>Δ</mi>\u0000 <mi>H</mi>\u0000 </mrow>\u0000 <annotation>$$ Delta mathrm{H} $$</annotation>\u0000 </semantics></math>) and free energy (<span></span><math>\u0000 <semantics>\u0000 <mrow>\u0000 <mi>Δ</mi>\u0000 <mi>G</mi>\u0000 </mrow>\u0000 <annotation>$$ Delta mathrm{G} $$</annotation>\u0000 </semantics></math>) values for reactions of benzophenone derivatives with various CI-MS reagent ions are presented in Table 1. The values for reactions with NO<sup>+</sup> and O<span></span><math>\u0000 <semantics>\u0000 <mrow>\u0000 <msubsup>\u0000 <mrow></mrow>\u0000 <mrow>\u0000 <mn>2</mn>\u0000 </mrow>\u0000 <mrow>\u0000 <mo>+</mo>\u0000 </mrow>\u0000 </msubsup>\u0000 </mrow>\u0000 <annotation>$$ {}_2^{+} $$</annotation>\u0000 </semantics></math> have been adjusted, as they were previously overestimated in Table 2.</p>","PeriodicalId":16178,"journal":{"name":"Journal of Mass Spectrometry","volume":"60 2","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jms.5105","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143006514","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
digitalMALDI: A Single-Particle–Based Mass Spectrometric Detection System for Biomolecules digitalMALDI:基于单粒子的生物分子质谱检测系统。
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-17 DOI: 10.1002/jms.5110
Dapeng Chen, Wayne A. Bryden, Michael McLoughlin, Scott A. Ecelberger, Timothy J. Cornish, Lara P. Moore, Kyle M. Regan

The development of a real-time system for characterizing individual biomolecule-containing aerosol particles presents a transformative opportunity to monitor respiratory conditions, including infections and lung diseases. Existing molecular assay technologies, although effective, rely on costly reagents, are relatively slow, and face challenges in multiplexing, limiting their use for real-time applications. To overcome these challenges, we developed digitalMALDI, a laser-based mass spectrometry system designed for single-particle characterization. digitalMALDI operates as a near real-time platform that directly samples aerosols, bypassing the need for complex and time-consuming sample preparation. To demonstrate the feasibility of this approach, intact insulin protein was used as a representative target. Results showed that digitalMALDI is capable of detecting 1 pg of insulin protein in single aerosol particles, suggesting that the system has a broad application for disease diagnosis, environmental monitoring, and biosecurity management.

表征单个含生物分子气溶胶颗粒的实时系统的开发为监测呼吸系统状况(包括感染和肺部疾病)提供了一个变革性的机会。现有的分子分析技术虽然有效,但依赖于昂贵的试剂,速度相对较慢,并且在多路复用方面面临挑战,限制了它们在实时应用中的应用。为了克服这些挑战,我们开发了digitalMALDI,这是一种基于激光的质谱系统,专为单颗粒表征而设计。digitalMALDI是一个接近实时的平台,可以直接对气溶胶进行采样,而无需进行复杂且耗时的样品制备。为了证明该方法的可行性,我们以完整的胰岛素蛋白作为代表性靶点。结果表明,digitalMALDI能够检测单个气溶胶颗粒中1 pg的胰岛素蛋白,表明该系统在疾病诊断、环境监测和生物安全管理方面具有广泛的应用前景。
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引用次数: 0
Feasibility of IR-MALDESI Mass Spectrometry Imaging of PFAS IR-MALDESI质谱成像PFAS的可行性。
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-14 DOI: 10.1002/jms.5112
Allen Martin, Alena N. Joignant, Matt Farrell, Antonio Planchart, David C. Muddiman

Perfluoroalkyl and polyfluoroalkyl substances (PFAS) are a class of emerging contaminants that have been in use industrially since the 1940s. Their long-term and extensive commercial use has led to their ubiquitous presence in the environment. The ability to measure the bioconcentration and distribution of PFAS in the tissue of aquatic organisms helps elucidate the persistence of PFAS as well as environmental impacts. Traditional analysis by LC–MS/MS can measure total PFAS concentrations within an organism but cannot provide comprehensive spatial information regarding PFAS concentrations within the organism. In the current study, we used infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) to determine the limit of detection (LOD) of several PFAS utilizing a commercial standard mix spotted on mouse liver tissue. The traditional ice matrix and an alternative matrix, 1,8-bis (tetramethylguanidino)naphthalene (TMGN), were explored when determining the limits of detection for various PFAS by IR-MALDESI. The ice matrix alone resulted in a higher response than the combination of TMGN and ice. The resulting LOD for perfluorooctane sulfonic acid (PFOS) on a per voxel basis was 0.16 fmol/voxel. For comparison, zebrafish that were exposed to perfluorooctanoic acid (PFOA), PFOS, and perfluorohexanesulfonic acid (PFHxS) at different concentrations were homogenized, and PFAS were extracted by solid–liquid extraction, purified by solid phase extraction, and analyzed by LC–MS/MS to determine the level of bioaccumulation in the zebrafish. PFOS resulted in the highest level of bioaccumulation (731.9 μg/kg, or 234.2 fg/voxel). A zebrafish that had been exposed to a PFAS mixture of PFOA (250 ng/L), PFOS (250 ng/L), and PFHxS (125 ng/L) was cryosectioned and analyzed by IR-MALDESI. Images could not be generated as the accumulation of PFAS in the sectioned tissue was below detection limit of the technique.

全氟烷基和多氟烷基物质(PFAS)是一类新兴污染物,自20世纪40年代以来一直在工业上使用。它们的长期和广泛的商业用途导致它们在环境中无处不在。测量PFAS在水生生物组织中的生物浓度和分布的能力有助于阐明PFAS的持久性以及环境影响。传统的LC-MS/MS分析可以测量生物体内的总PFAS浓度,但不能提供生物体内PFAS浓度的全面空间信息。在目前的研究中,我们使用红外基质辅助激光解吸电喷雾电离(IR-MALDESI)来确定几种PFAS的检出限(LOD),利用商业标准混合物在小鼠肝组织上斑点。在IR-MALDESI测定各种PFAS的检出限时,探讨了传统冰基质和替代基质1,8-双(四甲基胍)萘(TMGN)。单独使用冰基质比使用TMGN和冰基质产生更高的响应。由此得出的全氟辛烷磺酸(PFOS)在每体素基础上的LOD为0.16 fmol/体素。为比较,将暴露于不同浓度的全氟辛酸(PFOA)、全氟辛烷磺酸(PFOS)和全氟己磺酸(PFHxS)的斑马鱼均质化,采用固液萃取法提取PFAS,固相萃取法纯化,LC-MS/MS分析,测定其在斑马鱼体内的生物蓄积量。全氟辛烷磺酸导致最高水平的生物积累(731.9 μg/kg,或234.2 fg/体素)。将暴露于PFOA (250 ng/L), PFOS (250 ng/L)和PFHxS (125 ng/L)的PFAS混合物中的斑马鱼冷冻切片并通过IR-MALDESI进行分析。由于PFAS在切片组织中的积累低于该技术的检测极限,因此无法生成图像。
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引用次数: 0
Application of Online Multi-Internal Standard Calibration for Determination of Iodine by ICP-MS 多内标在线定标在ICP-MS测定碘中的应用。
IF 1.9 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-05 DOI: 10.1002/jms.5109
Long-Hua Zhou, Xing-Chen Lin, Li-Li Suo, Li-Fang Ma, Gui-Xiang Hu, Xiang Xia, Ming Li, Wei-Hua Huang, Yong-Jiu Jin

This study presents a comprehensive evaluation of the application of online multi-internal standard calibration (M.ISC) in determining iodine concentrations through inductively coupled plasma mass spectrometry (ICP-MS). Notably, M.ISC streamlines the calibration process by requiring only a single standard solution, thereby enhancing sample throughput and minimizing liquid waste. In addition, unlike conventional internal standard (IS) methods, M.ISC omits the need for time-consuming species identification by utilizing multiple IS species simultaneously to minimize signal biases. The effectiveness of M.ISC was validated through the analysis of six standard reference samples, with the results of LOD and LOQ also being calculated by the error propagation approach. The traditional chemical analytical methods (TCAM), external standard calibration (EC) and single IS methods were also evaluated as comparative purpose. Nonetheless, M.ISC emerges as a straightforward matrix-correction strategy, offering a simple and efficient alternative to traditional calibration methods for iodine detection by ICP-MS.

本研究对在线多内标校准(m.s isc)在电感耦合等离子体质谱(ICP-MS)测定碘浓度中的应用进行了综合评价。值得注意的是,m.s isc简化了校准过程,只需要一个标准溶液,从而提高了样品吞吐量,最大限度地减少了液体浪费。此外,与传统的内部标准(IS)方法不同,M.ISC通过同时利用多个IS物种来减少信号偏差,从而省去了耗时的物种识别的需要。通过对6个标准参比样品的分析,验证了m.s isc的有效性,并通过误差传播法计算了LOD和LOQ的结果。并对传统的化学分析方法(TCAM)、外部标准校准(EC)和单一IS方法进行了比较。尽管如此,M.ISC作为一种直接的矩阵校正策略出现,为ICP-MS检测碘提供了一种简单有效的替代传统校准方法。
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引用次数: 0
期刊
Journal of Mass Spectrometry
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