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The peripheral blood transcriptome dynamically reflects system wide biology: a potential diagnostic tool 外周血转录组动态反映全系统生物学:一种潜在的诊断工具
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.10.005
Choong-Chin Liew , Jun Ma , Hong-Chang Tang , Run Zheng , Adam A. Dempsey

In our genome-wide survey of gene expression in human peripheral blood cells using both an expressed sequence tag (EST) and a microarray hybridization approach, we identified the expression of a large proportion (approximately 80%) of the genes encoded in the human genome. Comparison of the peripheral blood transcriptome with genes expressed in nine different human tissue types revealed that expression of over 80% was shared with any given tissue. We also sought to determine whether those gene transcripts undetected by these methods were also expressed in peripheral blood cells. Using reverse-transcriptase-polymerase chain reaction, we detected additional tissue-specific gene transcripts including beta-myosin heavy chain (heart specific) and insulin (specific to pancreatic islet beta cells), in circulating blood cells. Arguably, the detection of low levels of tissue-specific transcripts could be considered products of “illegitimate” transcription; however, our study also demonstrates that environmental conditions affect the transcriptional regulation of insulin in the peripheral blood. We thus hypothesize that blood cells can act as sentinels of disease and that we could capitalize on this property of blood for the diagnosis/prognosis of disease (the “Sentinel Principle”). Peripheral blood is an ideal surrogate tissue as it is readily obtainable, provides a large biosensor pool in the form of gene transcripts, and response to changes in the macro- and micro-environments is detectable as alterations in the levels of these gene transcripts.

在我们使用表达序列标签(EST)和微阵列杂交方法对人类外周血细胞基因表达的全基因组调查中,我们发现了人类基因组中大部分(约80%)编码基因的表达。将外周血转录组与9种不同人类组织类型中表达的基因进行比较,发现80%以上的表达与任何给定组织共享。我们还试图确定这些方法未检测到的基因转录物是否也在外周血细胞中表达。利用逆转录-聚合酶链反应,我们在循环血细胞中检测到其他组织特异性基因转录物,包括β -肌球蛋白重链(心脏特异性)和胰岛素(胰岛细胞特异性)。可以说,检测到低水平的组织特异性转录本可以被认为是“非法”转录的产物;然而,我们的研究也表明,环境条件会影响外周血中胰岛素的转录调节。因此,我们假设血细胞可以作为疾病的哨兵,我们可以利用血液的这一特性来诊断/预测疾病(“哨兵原则”)。外周血是理想的替代组织,因为它容易获得,提供了大量基因转录物形式的生物传感器库,并且可以通过这些基因转录物水平的改变来检测对宏观和微观环境变化的反应。
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引用次数: 588
About the cover illustration: Saint Mary’s of Bethlehem (“Bedlam”) 关于封面插图:伯利恒圣玛丽教堂(“疯人院”)
Pub Date : 2006-03-01 DOI: 10.1016/J.LAB.2006.02.002
D. Hammerschmidt
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引用次数: 0
Molecular targeted therapy: A strategy of disillusions or optimism? 分子靶向治疗:是一种幻灭还是乐观的策略?
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.11.005
Sándor Eckhardt

Cytotoxic drugs were designed to kill tumor cells, whereas agents of molecular targeted therapy inhibit various molecular functions of the tumor cell. Consequently, their toxicity profiles also differ. Molecular targeted agents, except for monoclonal antibodies, are enumerated here in three classes: compounds active extracellularly, extra/intracellularly, and intracellularly. Although no major breakthrough has occurred in the drug treatment of neoplastic diseases yet, such compounds as trastuzumab, cetuximab, bevacizumab, gefitinib, erlotinib, imatinib, and bortezomib have shown considerable clinical promise. Major obstacles to the further development of molecular targeted compounds are described. The use of different endpoints, positron emission tomography for evaluation, and predictive genetic markers are recommended. Combination therapy with cytotoxic drugs and studies in an adjuvant setting are also recommended. It is concluded that cautious optimism about the future of molecular targeted therapy is reasonable.

细胞毒药物被设计用来杀死肿瘤细胞,而分子靶向治疗药物抑制肿瘤细胞的各种分子功能。因此,它们的毒性也不同。除单克隆抗体外,分子靶向药物在这里分为三类:细胞外活性化合物,细胞外/细胞内活性化合物和细胞内活性化合物。虽然肿瘤疾病的药物治疗尚未取得重大突破,但曲妥珠单抗、西妥昔单抗、贝伐单抗、吉非替尼、厄洛替尼、伊马替尼、硼替佐米等化合物已显示出相当大的临床前景。描述了进一步开发分子靶向化合物的主要障碍。建议使用不同的终点,正电子发射断层扫描进行评估,并预测遗传标记。与细胞毒性药物联合治疗和辅助研究也被推荐。因此,对分子靶向治疗的前景持谨慎乐观态度是合理的。
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引用次数: 10
This month in J Lab Clin Med 本月在J Lab临床医学杂志上
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2006.02.003
Dale E. Hammerschmidt MD (Editor-in-Chief)
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引用次数: 0
The anion gap (AG): studies in the nephrotic syndrome and diabetic ketoacidosis (DKA) 阴离子间隙(AG):肾病综合征和糖尿病酮症酸中毒(DKA)的研究
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.10.004
Howard E. Corey

Although “unmeasured” anions contribute to metabolic acidosis in a variety of disease states, they are generally not measured directly but estimated from the calculation of “gaps.” Among the most commonly used method, the anion gap (AG) is not only a function of “unmeasured” anions, but also it is a function of plasma non-carbonate buffers (albumin and phosphate), the plasma pH, and the method of measurement. To clarify the contribution of non-carbonate buffers to the AG, the Figge–Fencl–Waston model of human plasma was applied to laboratory values obtained from two novel populations, patients with nephrotic syndrome and patients with diabetic ketoacidosis (DKA). The model performed adequately, justifying the common clinical practice of correcting the AG for the net protein charge.

虽然“未测量的”阴离子在各种疾病状态下导致代谢性酸中毒,但它们通常不是直接测量的,而是通过计算“间隙”来估计的。在最常用的方法中,阴离子间隙(AG)不仅是“未测量”阴离子的函数,而且是血浆非碳酸盐缓冲液(白蛋白和磷酸盐)、血浆pH和测量方法的函数。为了阐明非碳酸盐缓冲液对AG的贡献,将figge - fenl - waston血浆模型应用于两个新人群(肾病综合征患者和糖尿病酮症酸中毒(DKA)患者)的实验室值。该模型表现良好,证明了校正AG为净蛋白质电荷的常见临床实践是正确的。
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引用次数: 21
Long-term effect of Heme oxygenase (HO)-1 induction in glomerular immune injury 血红素加氧酶(HO)-1诱导对肾小球免疫损伤的远期影响
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.11.009
Prasun K. Datta , Pu Duann , Elias A. Lianos

In a rat model of macrophage-dependent glomerular immune injury induced by administration of antibody against the glomerular basement membrane (anti-GBM), the authors assessed the anti-proteinuric effect of Heme Oxygenase-1 (HO-1) induction. Rats received anti-GBM antibody alone, anti-GBM antibody and treatment with the HO-1 inducer, hemin, or non-immune serum (controls). Urine protein, creatinine, and nitrite/nitrate excretion were measured on days 5, 7, and 14 after administration of the anti-GBM antibody. In hemin-treated animals with anti-GBM antibody-induced immune injury, HO-1 immunolocalized in macrophages infiltrating glomeruli and in tubular epithelial cells. In these animals, proteinuria was decreased. There was also a decrease in blood urea nitrogen (BUN) levels without a change in serum creatinine or systemic blood pressure. The observations establish the anti-proteinuric effect of hemin induction. This effect could be mechanistically linked to blunting of the ability of infiltrating macrophages to cause injury or to changes in tubular handling of filtered protein.

在给药抗肾小球基底膜抗体(anti-GBM)诱导的巨噬细胞依赖性肾小球免疫损伤大鼠模型中,作者评估了血红素加氧酶-1 (HO-1)诱导的抗蛋白尿作用。大鼠分别接受抗gbm抗体、抗gbm抗体和HO-1诱导剂、血红素或非免疫血清治疗(对照组)。在给予抗gbm抗体后第5、7、14天测定尿蛋白、肌酐和亚硝酸盐/硝酸盐排泄量。在抗gbm抗体诱导免疫损伤的hemin处理动物中,HO-1免疫定位于浸润肾小球的巨噬细胞和小管上皮细胞。在这些动物中,蛋白尿减少了。血尿素氮(BUN)水平也有所下降,但血清肌酐或全身血压没有变化。观察结果证实了血红素诱导的抗蛋白尿作用。这种效应可能与浸润性巨噬细胞造成损伤的能力减弱或滤过蛋白的小管处理改变有关。
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引用次数: 14
Rapid, accurate, and sensitive fatty acid ethyl ester determination by gas chromatography-mass spectrometry 气相色谱-质谱联用法快速、准确、灵敏地测定脂肪酸乙酯
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.11.006
Clark C. Kulig , Thomas P. Beresford , Gregory T. Everson

Background: Fatty acid ethyl esters (FAEEs) are useful markers of ongoing alcohol use and may be associated with alcohol-induced damage to the liver and pancreas. In this article, we describe a novel method for rapid determination of the three major FAEEs found in human plasma. Methods: Internal standard, ethyl heptadecanoate, was added to plasma samples, and FAEEs were isolated by acetone precipitation, hexane lipid extraction, and amino-propyl silica solid phase extraction. FAEEs were quantitated by gas chromatography-mass spectrometry (GC-MS) using a nonpolar dimethylpolysiloxane column. The accuracy, precision, specificity, and sensitivity of the assay were defined from plasma samples from recently drinking and abstinent persons, with and without the addition of FAEEs. Results: Individual FAEE peaks demonstrated excellent resolution. Instrument time was reduced by more than 60%. The lower limit of detection was 5 to 10 nM, and the lower limit of quantitation for each FAEE was 60 nM (for 22 samples with known concentration 60 nM, × ±SD: 61 ± 5.7, 57 ± 5.7, and 57 ± 5.9 nM, for ethyl palmitate, ethyl oleate, and ethyl stearate, respectively). Instrument precision (coefficient of variance, CV) for these three FAEEs was 0.3%, 0.4%, and 0.7%, respectively. Intra-assay precision (CV) for total FAEEs was less than 7%. FAEEs were absent in 49 samples from abstinent persons. FAEEs were detected in all 76 samples with associated positive blood alcohol levels. Conclusions: Our method of FAEE analysis is rapid and potentially useful in research and clinical studies. FAEE determination using this method is precise, accurate, sensitive, and specific and deserves broader application.

背景:脂肪酸乙酯(FAEEs)是持续饮酒的有用标记物,可能与酒精引起的肝脏和胰腺损伤有关。在本文中,我们描述了一种快速测定人血浆中三种主要faee的新方法。方法:血浆样品中加入内标物十七烷酸乙酯,采用丙酮沉淀法、己烷脂质萃取法、氨基丙基硅固相萃取法分离faes。采用非极性二甲基聚硅氧烷色谱柱,气相色谱-质谱(GC-MS)对faes进行定量分析。测定方法的准确性、精密度、特异性和敏感性由近期饮酒和戒酒者的血浆样本确定,无论是否添加faee。结果:单个FAEE峰具有良好的分辨率。仪器时间减少60%以上。检测下限为5 ~ 10 nM,每种FAEE的定量下限为60 nM(已知浓度为60 nM的22个样品,棕榈酸乙酯、油酸乙酯和硬脂酸乙酯的x±SD分别为61±5.7、57±5.7和57±5.9 nM)。这三个faee的仪器精度(方差系数,CV)分别为0.3%,0.4%和0.7%。总FAEEs的测定内精密度(CV)小于7%。来自戒断者的49个样本中不存在fae。在所有76个血液酒精浓度呈阳性的样本中均检测到FAEEs。结论:我们的FAEE分析方法快速,在研究和临床研究中具有潜在的应用价值。该法测定FAEE精密度、准确度、灵敏度、专属性好,值得推广应用。
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引用次数: 23
Comparison of a new office-based stool immunoassay and 13C-UBT in the diagnosis of current Helicobacter pylori infection 新型办公室粪便免疫测定法与13C-UBT诊断幽门螺杆菌感染的比较
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.11.007
I.-Chen Wu , Sheng-Wen Wang , Yuan-Chieh Yang , Fang-Jung Yu , Chao-Hung Kuo , Chieh-Han Chuang , Yi-Chen Lee , Hung-Lung Ke , Fu-Chen Kuo , Lin-Li Chang , Wen-Ming Wang , Chang-Ming Jan , Deng-Chyang Wu

Noninvasive methods to diagnose the infection status of Helicobacter pylori were a new developed trend. In this study, the authors sought to investigate the difference between a new office-based stool immunoassay (ImmunoCard STAT! HpSA) and 13C-Urea Breath Test (13C-UBT). We studied 254 dyspeptic patients (159 men, 95 women; mean age = 52.8 ± 14.3 years, range: 19–89 years). All of them underwent gastroendoscopy, 13C-UBT test, and delivered stool samples within 3 days after endoscopy for the ImmunoCard STAT! HpSA test. The exclusion criteria were those who (1) had received previous anti-Hp treatment, proton pump inhibitor, antibiotics, or bismuth within 1 month of endoscopic examination; (2) had bleeding peptic ulcers; (3) had previously undergone gastric surgery; (4) had long-term use of corticosteroid or immunosuppressant drugs; (5) were pregnant or lactating; and (6) had incomplete data. Hp infection was considered positive when either culture was positive, or both histology and rapid urea test were positive. Those patients were classified as pre- and post-Hp treatment groups. Those in the post-treatment group were patients who received Hp eradication therapy at our hospital more than 2 months ago. The overall sensitivity, specificity, and positive and negative predictive values of 13C-UBT and ImmunoCard STAT! HpSA were 96.3%, 87.6%, 85.4%, 96.9%, and 95.4%, 83.4%, 81.3%, 96.0%, respectively. The sensitivity, specificity, and accuracy of both tests are comparable in the pre- and post- treatment groups. The advantages of ImmunoCard STAT! HpSA over a breath test are that it is cheaper, more time-saving, and can be used in-office.

无创诊断幽门螺杆菌感染是一种新的发展趋势。在这项研究中,作者试图调查一种新的基于办公室的粪便免疫测定法(ImmunoCard STAT!HpSA)和13c -尿素呼气试验(13C-UBT)。我们研究了254例消化不良患者(男性159例,女性95例;平均年龄52.8±14.3岁,范围19 ~ 89岁。所有患者均行胃镜检查,13C-UBT测试,并于内镜检查后3天内提供粪便样本进行免疫卡STAT!HpSA测试。排除标准为:(1)内镜检查1个月内曾接受过抗hp治疗、质子泵抑制剂、抗生素或铋;(2)消化性溃疡出血;(3)曾做过胃手术的;(4)长期使用皮质类固醇或免疫抑制药物;(5)孕期或哺乳期;(6)数据不完整。当培养阳性,或组织学和快速尿素试验均阳性时,认为Hp感染为阳性。这些患者被分为hp治疗前和治疗后两组。治疗后组为2个多月前在我院接受Hp根除治疗的患者。13C-UBT和ImmunoCard STAT!的总体敏感性、特异性及阳性、阴性预测值HpSA分别为96.3%、87.6%、85.4%、96.9%和95.4%、83.4%、81.3%、96.0%。两种检测的敏感性、特异性和准确性在治疗前组和治疗后组具有可比性。免疫卡STAT!HpSA比呼吸测试更便宜,更节省时间,可以在办公室使用。
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引用次数: 18
Pseudohyperkalemia in serum: the phenomenon and its clinical magnitude 血清假性高钾血症:现象及其临床意义
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2005.11.008
Nikolaos Sevastos , George Theodossiades , Stamatis Efstathiou , George V. Papatheodoridis , Emanuel Manesis , Athanasios J. Archimandritis

We investigated in detail the difference between serum and plasma potassium levels in patients with several conditions associated with pseudohyperkalemia. In total, 435 patients with either thrombocytoses, erythrocytoses, leucocytoses, or a mixed-type disorder and 30 healthy controls were included. In each case, the index Dk [serum potassium minus plasma potassium] and the index Dk100 (Dk × 100,000/platelets), which indicates the Dk value that corresponds to platelets of 100,000/mm3, were estimated. Median Dk was significantly higher in the groups with platelet, erythrocyte, or mixed-type disorders than in the controls (P = 0.001). Among these groups, Dk values were significantly higher in patients with thrombocytosis or mixed-type disorders compared with those with erythrocytosis (P < 0.001, for both). Furthermore, no significant difference was observed in Dk values between controls and patients with white blood cell disorders (P = 0.74). Dk values did not exceed 2.61 mmol/L, whereas Dk100 values were inversely related to platelet counts (r = −0.351, P < 0.01). In conclusion, pseudohyperkalemia is mainly present in patients with thrombocytosis or mixed-type disorders, probably as a result of the degranulation of platelets, which offers a potassium load to the surrounding plasma at the time of clot formation in vitro. However, the degree of pseudohyperkalemia does not increase proportionally with the increase of platelet counts, which may be associated with transfer of part of potassium load from the plasma back into red and white blood cells.

我们详细研究了几种与假性高钾血症相关的患者血清和血浆钾水平的差异。共纳入435例血小板增多症、红细胞增多症、白细胞增多症或混合型疾病患者和30例健康对照。在每一种情况下,都估计了Dk指数[血清钾减去血浆钾]和Dk100指数(Dk × 100,000/血小板),该指数表示100,000/mm3血小板对应的Dk值。血小板、红细胞或混合型疾病组的中位Dk显著高于对照组(P = 0.001)。在这些组中,血小板增多症或混合型疾病患者的Dk值明显高于红细胞增多症患者(P <两者都是0.001)。此外,对照组与白细胞障碍患者之间Dk值无显著差异(P = 0.74)。Dk值不超过2.61 mmol/L,而Dk100值与血小板计数呈负相关(r = - 0.351, P <0.01)。总之,假性高钾血症主要存在于血小板增多或混合型疾病患者中,可能是由于血小板脱粒,在体外凝块形成时,它为周围的血浆提供钾负荷。然而,假性高钾血症的程度并不随着血小板计数的增加而成比例地增加,这可能与部分钾负荷从血浆转移回红细胞和白细胞有关。
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引用次数: 53
About the cover illustration: Saint Mary’s of Bethlehem (“Bedlam”) 关于封面插图:伯利恒圣玛丽教堂(“疯人院”)
Pub Date : 2006-03-01 DOI: 10.1016/j.lab.2006.02.002
Dale E. Hammerschmidt MD (Editor-in-Chief)
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引用次数: 0
期刊
Journal of Laboratory and Clinical Medicine
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