首页 > 最新文献

Journal of physiology and biochemistry最新文献

英文 中文
Endothelial NOX5 overexpression induces changes in the cardiac gene profile: potential impact in myocardial infarction? 内皮细胞NOX5过表达诱导心脏基因谱改变:对心肌梗死的潜在影响?
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-08-11 DOI: 10.1007/s13105-023-00975-z
Adriana Cortés, Javier Marqués, Álvaro Pejenaute, Elena Ainzúa, Eduardo Ansorena, Gloria Abizanda, Felipe Prósper, Carlos de Miguel, Guillermo Zalba

Cardiovascular diseases and the ischemic heart disease specifically constitute the main cause of death worldwide. The ischemic heart disease may lead to myocardial infarction, which in turn triggers numerous mechanisms and pathways involved in cardiac repair and remodeling. Our goal in the present study was to characterize the effect of the NADPH oxidase 5 (NOX5) endothelial expression in healthy and infarcted knock-in mice on diverse signaling pathways. The mechanisms studied in the heart of mice were the redox pathway, metalloproteinases and collagen pathway, signaling factors such as NFκB, AKT or Bcl-2, and adhesion molecules among others. Recent studies support that NOX5 expression in animal models can modify the environment and predisposes organ response to harmful stimuli prior to pathological processes. We found many alterations in the mRNA expression of components involved in cardiac fibrosis as collagen type I or TGF-β and in key players of cardiac apoptosis such as AKT, Bcl-2, or p53. In the heart of NOX5-expressing mice after chronic myocardial infarction, gene alterations were predominant in the redox pathway (NOX2, NOX4, p22phox, or SOD1), but we also found alterations in VCAM-1 and β-MHC expression. Our results suggest that NOX5 endothelial expression in mice preconditions the heart, and we propose that NOX5 has a cardioprotective role. The correlation studies performed between echocardiographic parameters and cardiac mRNA expression supported NOX5 protective action.

心血管疾病和缺血性心脏病是世界范围内死亡的主要原因。缺血性心脏病可能导致心肌梗死,进而触发心脏修复和重塑的许多机制和途径。我们在本研究中的目标是表征健康和梗死敲除小鼠中NADPH氧化酶5(NOX5)内皮表达对不同信号通路的影响。在小鼠心脏中研究的机制包括氧化还原途径、金属蛋白酶和胶原途径、信号因子如NFκB、AKT或Bcl-2以及粘附分子等。最近的研究支持,NOX5在动物模型中的表达可以改变环境,并在病理过程之前使器官对有害刺激产生反应。我们发现参与心脏纤维化的成分(如I型胶原或TGF-β)以及心脏细胞凋亡的关键参与者(如AKT、Bcl-2或p53)的mRNA表达发生了许多变化。在慢性心肌梗死后表达NOX5的小鼠的心脏中,基因改变在氧化还原途径(NOX2、NOX4、p22phox或SOD1)中占主导地位,但我们也发现VCAM-1和β-MHC表达的改变。我们的研究结果表明,NOX5在小鼠中的内皮表达是心脏的先决条件,我们认为NOX5具有心脏保护作用。超声心动图参数与心脏mRNA表达之间的相关性研究支持NOX5的保护作用。
{"title":"Endothelial NOX5 overexpression induces changes in the cardiac gene profile: potential impact in myocardial infarction?","authors":"Adriana Cortés, Javier Marqués, Álvaro Pejenaute, Elena Ainzúa, Eduardo Ansorena, Gloria Abizanda, Felipe Prósper, Carlos de Miguel, Guillermo Zalba","doi":"10.1007/s13105-023-00975-z","DOIUrl":"10.1007/s13105-023-00975-z","url":null,"abstract":"<p><p>Cardiovascular diseases and the ischemic heart disease specifically constitute the main cause of death worldwide. The ischemic heart disease may lead to myocardial infarction, which in turn triggers numerous mechanisms and pathways involved in cardiac repair and remodeling. Our goal in the present study was to characterize the effect of the NADPH oxidase 5 (NOX5) endothelial expression in healthy and infarcted knock-in mice on diverse signaling pathways. The mechanisms studied in the heart of mice were the redox pathway, metalloproteinases and collagen pathway, signaling factors such as NFκB, AKT or Bcl-2, and adhesion molecules among others. Recent studies support that NOX5 expression in animal models can modify the environment and predisposes organ response to harmful stimuli prior to pathological processes. We found many alterations in the mRNA expression of components involved in cardiac fibrosis as collagen type I or TGF-β and in key players of cardiac apoptosis such as AKT, Bcl-2, or p53. In the heart of NOX5-expressing mice after chronic myocardial infarction, gene alterations were predominant in the redox pathway (NOX2, NOX4, p22phox, or SOD1), but we also found alterations in VCAM-1 and β-MHC expression. Our results suggest that NOX5 endothelial expression in mice preconditions the heart, and we propose that NOX5 has a cardioprotective role. The correlation studies performed between echocardiographic parameters and cardiac mRNA expression supported NOX5 protective action.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"787-797"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635946/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9965777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Construction of a hepatocytes-related and protein kinase-related gene signature in HCC based on ScRNA-Seq analysis and machine learning algorithm. 基于ScRNA-Seq分析和机器学习算法构建HCC肝细胞相关和蛋白激酶相关基因标记。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-07-17 DOI: 10.1007/s13105-023-00973-1
Zhuoer Zhang, Lisha Mou, Zuhui Pu, Xiaoduan Zhuang

With recent advancements in single-cell sequencing and machine learning methods, new insights into hepatocellular carcinoma (HCC) progression have been provided. Protein kinase-related genes (PKRGs) affect cell growth, differentiation, apoptosis, and signaling during HCC progression, making the predictive relevance of PKRGs in HCC highly necessary for personalized medicine. In this study, we analyzed single-cell data of HCC and used the machine learning method of LASSO regression to construct PKRG prediction models in six major cell types. CDK4 and AURKB were found to be the best PKRG prognostic signature for predicting the overall survival of HCC patients (including TCGA, ICGC, and GEO datasets) in hepatocytes. Independent clinical factors were further screened out using the COX regression method, and a nomogram combining PKRGs and cancer status was created. Treatment with Palbociclib (CDK4 Inhibitor) and Barasertib (AURKB Inhibitor) inhibited HCC cell migration. Patients classified as PKRG high- or low-risk groups showed different tumor mutation burdens, immune infiltrations, and gene enrichment. The PKRG high-risk group showed higher tumor mutation burdens and gene set enrichment analysis indicated that cell cycle, base excision repair, and RNA degradation pathways were more enriched in these patients. Additionally, the PKRG high-risk group demonstrated higher infiltration levels of Naïve CD8+ T cells, Endothelial cells, M2 macrophage, and Tregs than the low-risk group. In summary, this study established the hepatocytes-related PKRG signature for prognostic stratification at the single-cell level by using machine learning algorithms in HCC and identified potential HCC treatment targets based on the PKRG signature.

随着单细胞测序和机器学习方法的最新进展,对肝细胞癌(HCC)的进展提供了新的见解。蛋白激酶相关基因(PKRGs)在HCC进展过程中影响细胞生长、分化、凋亡和信号传导,这使得PKRGs在HCC中的预测相关性对于个性化药物非常必要。在本研究中,我们分析了HCC的单细胞数据,并使用LASSO回归的机器学习方法构建了六种主要细胞类型的PKRG预测模型。CDK4和AURKB被发现是预测HCC患者(包括TCGA、ICGC和GEO数据集)在肝细胞中总生存率的最佳PKRG预后标志。使用COX回归方法进一步筛选出独立的临床因素,并创建了结合PKRGs和癌症状态的列线图。Palbociclib(CDK4抑制剂)和Barasertib(AURKB抑制剂)治疗抑制HCC细胞迁移。PKRG高危或低危组的患者表现出不同的肿瘤突变负担、免疫浸润和基因富集。PKRG高危组显示出更高的肿瘤突变负荷,基因集富集分析表明,这些患者的细胞周期、碱基切除修复和RNA降解途径更富集。此外,PKRG高危组的Naive CD8+T细胞、内皮细胞、M2巨噬细胞和Tregs的浸润水平高于低风险组。总之,本研究通过在HCC中使用机器学习算法,在单细胞水平上建立了用于预后分层的肝细胞相关PKRG特征,并基于PKRG信号确定了潜在的HCC治疗靶点。
{"title":"Construction of a hepatocytes-related and protein kinase-related gene signature in HCC based on ScRNA-Seq analysis and machine learning algorithm.","authors":"Zhuoer Zhang, Lisha Mou, Zuhui Pu, Xiaoduan Zhuang","doi":"10.1007/s13105-023-00973-1","DOIUrl":"10.1007/s13105-023-00973-1","url":null,"abstract":"<p><p>With recent advancements in single-cell sequencing and machine learning methods, new insights into hepatocellular carcinoma (HCC) progression have been provided. Protein kinase-related genes (PKRGs) affect cell growth, differentiation, apoptosis, and signaling during HCC progression, making the predictive relevance of PKRGs in HCC highly necessary for personalized medicine. In this study, we analyzed single-cell data of HCC and used the machine learning method of LASSO regression to construct PKRG prediction models in six major cell types. CDK4 and AURKB were found to be the best PKRG prognostic signature for predicting the overall survival of HCC patients (including TCGA, ICGC, and GEO datasets) in hepatocytes. Independent clinical factors were further screened out using the COX regression method, and a nomogram combining PKRGs and cancer status was created. Treatment with Palbociclib (CDK4 Inhibitor) and Barasertib (AURKB Inhibitor) inhibited HCC cell migration. Patients classified as PKRG high- or low-risk groups showed different tumor mutation burdens, immune infiltrations, and gene enrichment. The PKRG high-risk group showed higher tumor mutation burdens and gene set enrichment analysis indicated that cell cycle, base excision repair, and RNA degradation pathways were more enriched in these patients. Additionally, the PKRG high-risk group demonstrated higher infiltration levels of Naïve CD8+ T cells, Endothelial cells, M2 macrophage, and Tregs than the low-risk group. In summary, this study established the hepatocytes-related PKRG signature for prognostic stratification at the single-cell level by using machine learning algorithms in HCC and identified potential HCC treatment targets based on the PKRG signature.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"771-785"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9826675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prognostication in NAFLD: physiological bases, clinical indicators, and newer biomarkers. NAFLD的预后:生理基础、临床指标和新的生物标志物。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2022-12-06 DOI: 10.1007/s13105-022-00934-0
Francesca Terracciani, Andrea Falcomatà, Paolo Gallo, Antonio Picardi, Umberto Vespasiani-Gentilucci

Non-alcoholic fatty liver disease (NAFLD) is becoming an epidemic in Western countries. Notably, while the majority of NAFLD patients will not evolve until advanced liver disease, a minority of them will progress towards liver-related events. Therefore, risk stratification and prognostication are emerging as fundamental in order to optimize human and economic resources for the care of these patients.Liver fibrosis has been clearly recognized as the main predictor of poor hepatic and extrahepatic outcomes. However, a prediction based only on the stage of fibrosis is near-sighted and static, as it does not capture the propensity of disease to further progress, the speed of progression and their changes over time. These determinants, which result from the interaction between genetic predisposition and acquired risk factors (obesity, diabetes, etc.), express themselves in disease activity, and can be synthesized by biomarkers of hepatic inflammation and fibrogenesis.In this review, we present the currently available clinical tools for risk stratification and prognostication in NAFLD specifically with respect to the risk of progression towards hard hepatic outcomes, i.e., liver-related events and death. We also discuss about the genetic and acquired drivers of disease progression, together with the physiopathological bases of their come into action. Finally, we introduce the most promising biomarkers in the direction of repeatedly assessing disease activity over time, mainly in response to future therapeutic interventions.

非酒精性脂肪肝(NAFLD)正在西方国家流行。值得注意的是,虽然大多数NAFLD患者直到晚期肝病才会发展,但其中少数患者会发展为肝脏相关事件。因此,风险分层和预测正成为优化护理这些患者的人力和经济资源的基础。肝纤维化已被明确认为是肝内和肝外预后不佳的主要预测因素。然而,仅基于纤维化阶段的预测是短视和静态的,因为它没有捕捉到疾病进一步发展的倾向、进展速度及其随时间的变化。这些决定因素是遗传易感性和后天风险因素(肥胖、糖尿病等)之间相互作用的结果,在疾病活动中表达,可以通过肝脏炎症和纤维化的生物标志物合成。在这篇综述中,我们介绍了目前可用于NAFLD风险分层和预测的临床工具,特别是关于进展为硬肝结果的风险,即肝脏相关事件和死亡。我们还讨论了疾病进展的遗传和后天驱动因素,以及它们发挥作用的生理病理基础。最后,我们介绍了最有前景的生物标志物,主要是针对未来的治疗干预措施,以反复评估疾病活动。
{"title":"Prognostication in NAFLD: physiological bases, clinical indicators, and newer biomarkers.","authors":"Francesca Terracciani, Andrea Falcomatà, Paolo Gallo, Antonio Picardi, Umberto Vespasiani-Gentilucci","doi":"10.1007/s13105-022-00934-0","DOIUrl":"10.1007/s13105-022-00934-0","url":null,"abstract":"<p><p>Non-alcoholic fatty liver disease (NAFLD) is becoming an epidemic in Western countries. Notably, while the majority of NAFLD patients will not evolve until advanced liver disease, a minority of them will progress towards liver-related events. Therefore, risk stratification and prognostication are emerging as fundamental in order to optimize human and economic resources for the care of these patients.Liver fibrosis has been clearly recognized as the main predictor of poor hepatic and extrahepatic outcomes. However, a prediction based only on the stage of fibrosis is near-sighted and static, as it does not capture the propensity of disease to further progress, the speed of progression and their changes over time. These determinants, which result from the interaction between genetic predisposition and acquired risk factors (obesity, diabetes, etc.), express themselves in disease activity, and can be synthesized by biomarkers of hepatic inflammation and fibrogenesis.In this review, we present the currently available clinical tools for risk stratification and prognostication in NAFLD specifically with respect to the risk of progression towards hard hepatic outcomes, i.e., liver-related events and death. We also discuss about the genetic and acquired drivers of disease progression, together with the physiopathological bases of their come into action. Finally, we introduce the most promising biomarkers in the direction of repeatedly assessing disease activity over time, mainly in response to future therapeutic interventions.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"851-868"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35211238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Gut microbiota might mediate the benefits of high-fiber/acetate diet to cardiac hypertrophy mice. 肠道菌群可能介导高纤维/醋酸盐日粮对心肌肥厚小鼠的益处。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-08-04 DOI: 10.1007/s13105-023-00971-3
Meifang Chen, Liming Peng, Chenglong Zhang, Qiong Liu, Tianyi Long, Qiying Xie

Continuously prolonged cardiac hypertrophy results in maladaptive myocardial remodeling, which affects cardiac function and can eventually lead to heart failure. Short-chain fatty acids (SCFAs), including acetate, propionate, and butyrate, have been reported to be associated with cardiovascular diseases (CVD). Gut microbiota may mediate between dietary fiber and SCFA effects on cardiac hypertrophy. The mice model of isoproterenol (ISO)-induced cardiac hypertrophy was constructed and verified for physiological, functional, and fibrotic alterations in this study. Both high-fiber and acetate diet improved physiological indexes, ameliorated cardiac functions, and relieved fibrotic alterations in model mice hearts; collectively, cardiac hypertrophy in mice receiving both high-fiber and acetate diet improved. Following 16s rDNA sequencing and integrative bioinformatics, analyses indicated that both high-fiber and acetate diet caused alterations in mice gut microbiota compared with the ISO group, including OTU composition and abundance. In conclusion, high-fiber and acetate diet improve the physiological status, cardiac functions, and fibrotic alterations in ISO-induced hypertrophic mice. Besides, considering the alterations in mice gut microbiota in response to single ISO, both high-fiber and acetate diet treatment, gut microbiota might mediate the favorable benefits of both high-fiber and acetate diet on cardiac hypertrophy.

持续延长的心肌肥大会导致不适应的心肌重塑,从而影响心脏功能,最终导致心力衰竭。短链脂肪酸(SCFA),包括乙酸盐、丙酸盐和丁酸盐,已被报道与心血管疾病(CVD)有关。肠道微生物群可能介导膳食纤维和SCFA对心肌肥大的影响。本研究构建了异丙肾上腺素(ISO)诱导的心肌肥大小鼠模型,并验证了其生理、功能和纤维化变化。高纤维饮食和醋酸盐饮食都改善了模型小鼠心脏的生理指标,改善了心脏功能,缓解了纤维化的改变;总的来说,接受高纤维和醋酸盐饮食的小鼠的心肌肥大得到了改善。根据16s rDNA测序和综合生物信息学,分析表明,与ISO组相比,高纤维和乙酸盐饮食都会导致小鼠肠道微生物群的改变,包括OTU的组成和丰度。总之,高纤维和醋酸盐饮食改善了ISO诱导的肥大小鼠的生理状态、心脏功能和纤维化改变。此外,考虑到小鼠肠道微生物群对单一ISO、高纤维和醋酸盐饮食治疗的反应,肠道微生物群可能介导高纤维和乙酸盐饮食对心肌肥大的有利益处。
{"title":"Gut microbiota might mediate the benefits of high-fiber/acetate diet to cardiac hypertrophy mice.","authors":"Meifang Chen, Liming Peng, Chenglong Zhang, Qiong Liu, Tianyi Long, Qiying Xie","doi":"10.1007/s13105-023-00971-3","DOIUrl":"10.1007/s13105-023-00971-3","url":null,"abstract":"<p><p>Continuously prolonged cardiac hypertrophy results in maladaptive myocardial remodeling, which affects cardiac function and can eventually lead to heart failure. Short-chain fatty acids (SCFAs), including acetate, propionate, and butyrate, have been reported to be associated with cardiovascular diseases (CVD). Gut microbiota may mediate between dietary fiber and SCFA effects on cardiac hypertrophy. The mice model of isoproterenol (ISO)-induced cardiac hypertrophy was constructed and verified for physiological, functional, and fibrotic alterations in this study. Both high-fiber and acetate diet improved physiological indexes, ameliorated cardiac functions, and relieved fibrotic alterations in model mice hearts; collectively, cardiac hypertrophy in mice receiving both high-fiber and acetate diet improved. Following 16s rDNA sequencing and integrative bioinformatics, analyses indicated that both high-fiber and acetate diet caused alterations in mice gut microbiota compared with the ISO group, including OTU composition and abundance. In conclusion, high-fiber and acetate diet improve the physiological status, cardiac functions, and fibrotic alterations in ISO-induced hypertrophic mice. Besides, considering the alterations in mice gut microbiota in response to single ISO, both high-fiber and acetate diet treatment, gut microbiota might mediate the favorable benefits of both high-fiber and acetate diet on cardiac hypertrophy.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"745-756"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9936983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The serum uric acid/creatinine ratio is associated with nonalcoholic fatty liver disease in the general population. 在普通人群中,血清尿酸/肌酸酐比率与非酒精性脂肪肝相关。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2022-05-12 DOI: 10.1007/s13105-022-00893-6
Silvia Sookoian, Carlos J Pirola

Serum uric acid-to-creatinine ratio (sUA/CrR) may be associated with metabolic syndrome components, but limited evidence exists on a relationship between sUA/Cr and NAFLD. Here, we investigated the association between sUA/CrR and NAFLD.We performed a cross-sectional analysis in 3359 subjects who participated in the NHANES 2017-2018 survey and consumed less than 30 and 20 g alcohol (men and women, respectively), with no positive tests of viral hepatitis. Liver steatosis was defined by controlled attenuation parameter and fibrosis by stiffness measurements obtained via transient elastography. We modeled the relationship between NAFLD and relevant demographic, anthropometric, and biochemical variables.sUA/CrR was significantly higher in participants with NAFLD than those without NAFLD. LASSO logit regression showed that only logarithmized age (p = 1.2e-3), waist circumference (WC) (p = 1.8e-5), triglycerides (p = 5e-6), and sUA/CrR (p = 3e-5) were retained in the model. Multivariate logistic analysis demonstrated a significant association between sUA/CrR and NAFLD; the OR for NAFLD of one log(sUA/CrR) increase was 2.61 (95% CI: 1.86-3.68, p < 3e-8) after adjusting for relevant covariables, including aminotransaminase levels and the effect of sUA/CrR remained significant for highest WC quintiles. The model's predictive power with vs. without sUA/CrR was slightly but significantly better (Auroc: 0.859 ± 0.006 vs. 0.855 ± 0.007, p < 1.1e-2). Mediation analysis showed that SUA/CrR modestly mediates the effect of WC and insulin resistance but not glycohemoglobin on NAFLD.In conclusion, elevated sUA/CrR was significantly associated with NAFLD in the general population. Therefore, kidney function should be closely monitored in NAFLD patients.

血清尿酸与肌酐比值(sUA/CrR)可能与代谢综合征成分有关,但关于sUA/Cr与NAFLD之间关系的证据有限。在这里,我们调查了sUA/CrR与NAFLD之间的关系。我们对参与NHANES 2017-2018调查的3359名受试者进行了横断面分析,这些受试者饮酒量分别低于30克和20克(男性和女性),没有病毒性肝炎阳性检测。肝脂肪变性由受控衰减参数定义,纤维化由瞬态弹性成像获得的硬度测量定义。我们对NAFLD与相关人口统计学、人体测量和生化变量之间的关系进行了建模。患有NAFLD的参与者的UA/CrR显著高于未患有NAFLD的参与者。LASSO-logit回归显示,只有对数年龄(p = 1.2e-3)、腰围(WC)(p = 1.8e-5)、甘油三酯(p = 5e-6)和sUA/CrR(p = 3e-5)保留在模型中。多因素logistic分析显示sUA/CrR与NAFLD之间存在显著相关性;NAFLD增加一个log(sUA/CrR)的OR为2.61(95%CI:1.86-3.68,p
{"title":"The serum uric acid/creatinine ratio is associated with nonalcoholic fatty liver disease in the general population.","authors":"Silvia Sookoian, Carlos J Pirola","doi":"10.1007/s13105-022-00893-6","DOIUrl":"10.1007/s13105-022-00893-6","url":null,"abstract":"<p><p>Serum uric acid-to-creatinine ratio (sUA/CrR) may be associated with metabolic syndrome components, but limited evidence exists on a relationship between sUA/Cr and NAFLD. Here, we investigated the association between sUA/CrR and NAFLD.We performed a cross-sectional analysis in 3359 subjects who participated in the NHANES 2017-2018 survey and consumed less than 30 and 20 g alcohol (men and women, respectively), with no positive tests of viral hepatitis. Liver steatosis was defined by controlled attenuation parameter and fibrosis by stiffness measurements obtained via transient elastography. We modeled the relationship between NAFLD and relevant demographic, anthropometric, and biochemical variables.sUA/CrR was significantly higher in participants with NAFLD than those without NAFLD. LASSO logit regression showed that only logarithmized age (p = 1.2e-3), waist circumference (WC) (p = 1.8e-5), triglycerides (p = 5e-6), and sUA/CrR (p = 3e-5) were retained in the model. Multivariate logistic analysis demonstrated a significant association between sUA/CrR and NAFLD; the OR for NAFLD of one log(sUA/CrR) increase was 2.61 (95% CI: 1.86-3.68, p < 3e-8) after adjusting for relevant covariables, including aminotransaminase levels and the effect of sUA/CrR remained significant for highest WC quintiles. The model's predictive power with vs. without sUA/CrR was slightly but significantly better (Auroc: 0.859 ± 0.006 vs. 0.855 ± 0.007, p < 1.1e-2). Mediation analysis showed that SUA/CrR modestly mediates the effect of WC and insulin resistance but not glycohemoglobin on NAFLD.In conclusion, elevated sUA/CrR was significantly associated with NAFLD in the general population. Therefore, kidney function should be closely monitored in NAFLD patients.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":"1 1","pages":"891-899"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52637847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Frontiers in fatty liver: recent advances in pathogenic mechanisms, assessment of patients' prognosis and pharmacotherapy : MASLD: new pathogenic mechanisms, risk assessment tools and drug therapies. 脂肪肝前沿:发病机制、患者预后评估和药物治疗的最新进展:MASLD:新的发病机制、风险评估工具和药物治疗。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-10-21 DOI: 10.1007/s13105-023-00992-y
Maite G Fernández-Barrena, Matías A Avila
{"title":"Frontiers in fatty liver: recent advances in pathogenic mechanisms, assessment of patients' prognosis and pharmacotherapy : MASLD: new pathogenic mechanisms, risk assessment tools and drug therapies.","authors":"Maite G Fernández-Barrena, Matías A Avila","doi":"10.1007/s13105-023-00992-y","DOIUrl":"10.1007/s13105-023-00992-y","url":null,"abstract":"","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"811-813"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49678733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of SPARC (secreted protein acidic and rich in cysteine) in the pathogenesis of obesity, type 2 diabetes, and non-alcoholic fatty liver disease. SPARC(分泌蛋白酸性和富含半胱氨酸)在肥胖、2型糖尿病和非酒精性脂肪肝发病机制中的作用
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2022-08-26 DOI: 10.1007/s13105-022-00913-5
Catalina Atorrasagasti, Agostina M Onorato, Guillermo Mazzolini

Secreted protein acidic and rich in cysteine (SPARC) is an extracellular matrix glycoprotein with pleiotropic functions, which is expressed in adipose, hepatic, muscular, and pancreatic tissue. Particularly, several studies demonstrated that SPARC is an important player in the context of obesity, diabetes, and fatty liver disease including advanced hepatic fibrosis and hepatocellular carcinoma. Evidence in murine and human samples indicates that SPARC is involved in adipogenesis, cellular metabolism, extracellular matrix modulation, glucose and lipid metabolism, among others. Furthermore, studies in SPARC knockout mouse model showed that SPARC contributes to adipose tissue formation, non-alcoholic fatty liver disease (NAFLD), and diabetes. Hence, SPARC may represent a novel and interesting target protein for future therapeutic interventions or a biomarker of disease progression. This review summarizes the role of SPARC in the pathophysiology of obesity, and extensively revised SPARC functions in physiological and pathological adipose tissue deposition, muscle metabolism, liver, and diabetes-related pathways.

分泌蛋白酸性且富含半胱氨酸(SPARC)是一种具有多效性功能的细胞外基质糖蛋白,在脂肪、肝脏、肌肉和胰腺组织中表达。特别是,几项研究表明,SPARC在肥胖、糖尿病和脂肪肝疾病(包括晚期肝纤维化和肝细胞癌)中发挥着重要作用。小鼠和人类样本中的证据表明,SPARC参与脂肪生成、细胞代谢、细胞外基质调节、葡萄糖和脂质代谢等。此外,对SPARC敲除小鼠模型的研究表明,SPARC有助于脂肪组织的形成、非酒精性脂肪肝(NAFLD)和糖尿病。因此,SPARC可能代表一种新的、有趣的靶蛋白,用于未来的治疗干预或疾病进展的生物标志物。这篇综述总结了SPARC在肥胖病理生理学中的作用,并对SPARC在生理和病理脂肪组织沉积、肌肉代谢、肝脏和糖尿病相关途径中的功能进行了广泛的修订。
{"title":"The role of SPARC (secreted protein acidic and rich in cysteine) in the pathogenesis of obesity, type 2 diabetes, and non-alcoholic fatty liver disease.","authors":"Catalina Atorrasagasti, Agostina M Onorato, Guillermo Mazzolini","doi":"10.1007/s13105-022-00913-5","DOIUrl":"10.1007/s13105-022-00913-5","url":null,"abstract":"<p><p>Secreted protein acidic and rich in cysteine (SPARC) is an extracellular matrix glycoprotein with pleiotropic functions, which is expressed in adipose, hepatic, muscular, and pancreatic tissue. Particularly, several studies demonstrated that SPARC is an important player in the context of obesity, diabetes, and fatty liver disease including advanced hepatic fibrosis and hepatocellular carcinoma. Evidence in murine and human samples indicates that SPARC is involved in adipogenesis, cellular metabolism, extracellular matrix modulation, glucose and lipid metabolism, among others. Furthermore, studies in SPARC knockout mouse model showed that SPARC contributes to adipose tissue formation, non-alcoholic fatty liver disease (NAFLD), and diabetes. Hence, SPARC may represent a novel and interesting target protein for future therapeutic interventions or a biomarker of disease progression. This review summarizes the role of SPARC in the pathophysiology of obesity, and extensively revised SPARC functions in physiological and pathological adipose tissue deposition, muscle metabolism, liver, and diabetes-related pathways.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"815-831"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33439758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Hepatocellular carcinoma induced by hepatocyte Pten deletion reduces BAT UCP-1 and thermogenic capacity in mice, despite increasing serum FGF-21 and iWAT browning. 肝细胞Pten缺失诱导的肝细胞癌降低了小鼠的BAT UCP-1和产热能力,尽管增加了血清FGF-21和iWAT褐变。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-07-05 DOI: 10.1007/s13105-023-00970-4
Álbert S Peixoto, Mayara F Moreno, Érique Castro, Luiz A Perandini, Thiago Belchior, Tiago E Oliveira, Thayna S Vieira, Gustavo R Gilio, Caroline A Tomazelli, Bianca F Leonardi, Milene Ortiz-Silva, Luciano P Silva Junior, Eduardo H Moretti, Alexandre A Steiner, William T Festuccia

Hepatocellular carcinoma (HCC) markedly enhances liver secretion of fibroblast growth factor 21 (FGF-21), a hepatokine that increases brown and subcutaneous inguinal white adipose tissues (BAT and iWAT, respectively) uncoupling protein 1 (UCP-1) content, thermogenesis and energy expenditure. Herein, we tested the hypothesis that an enhanced BAT and iWAT UCP-1-mediated thermogenesis induced by high levels of FGF-21 is involved in HCC-associated catabolic state and fat mass reduction. For this, we evaluated body weight and composition, liver mass and morphology, serum and tissue levels of FGF-21, BAT and iWAT UCP-1 content, and thermogenic capacity in mice with Pten deletion in hepatocytes that display a well-defined progression from steatosis to steatohepatitis (NASH) and HCC upon aging. Hepatocyte Pten deficiency promoted a progressive increase in liver lipid deposition, mass, and inflammation, culminating with NASH at 24 weeks and hepatomegaly and HCC at 48 weeks of age. NASH and HCC were associated with elevated liver and serum FGF-21 content and iWAT UCP-1 expression (browning), but reduced serum insulin, leptin, and adiponectin levels and BAT UCP-1 content and expression of sympathetically regulated gene glycerol kinase (GyK), lipoprotein lipase (LPL), and fatty acid transporter protein 1 (FATP-1), which altogether resulted in an impaired whole-body thermogenic capacity in response to CL-316,243. In conclusion, FGF-21 pro-thermogenic actions in BAT are context-dependent, not occurring in NASH and HCC, and UCP-1-mediated thermogenesis is not a major energy-expending process involved in the catabolic state associated with HCC induced by Pten deletion in hepatocytes.

肝细胞癌(HCC)显著增强肝脏分泌成纤维细胞生长因子21(FGF-21),这是一种肝细胞因子,可增加棕色和皮下腹股沟白色脂肪组织(分别为BAT和iWAT)解偶联蛋白1(UCP-1)含量、产热和能量消耗。在此,我们检验了由高水平FGF-21诱导的BAT和iWAT UCP-1介导的产热增强与HCC相关的分解代谢状态和脂肪量减少有关的假设。为此,我们评估了肝细胞中Pten缺失小鼠的体重和组成、肝脏质量和形态、血清和组织FGF-21、BAT和iWAT UCP-1含量以及产热能力,肝细胞在衰老后表现出从脂肪变性到脂肪性肝炎(NASH)和HCC的明确进展。肝细胞Pten缺乏促进了肝脏脂质沉积、质量和炎症的逐渐增加,最终在24周时出现NASH,在48周时出现肝肿大和HCC。NASH和HCC与肝脏和血清FGF-21含量和iWAT UCP-1表达升高(褐变)有关,但血清胰岛素、瘦素和脂联素水平和BAT UCP-1含量降低,以及交感调节基因甘油激酶(GyK)、脂蛋白脂酶(LPL)和脂肪酸转运蛋白1(FATP-1)的表达降低,其共同导致响应CL-316243的全身产热能力受损。总之,FGF-21在BAT中的促热作用是上下文依赖性的,在NASH和HCC中不发生,并且UCP-1介导的产热不是参与肝细胞中Pten缺失诱导的HCC相关的分解代谢状态的主要能量消耗过程。
{"title":"Hepatocellular carcinoma induced by hepatocyte Pten deletion reduces BAT UCP-1 and thermogenic capacity in mice, despite increasing serum FGF-21 and iWAT browning.","authors":"Álbert S Peixoto, Mayara F Moreno, Érique Castro, Luiz A Perandini, Thiago Belchior, Tiago E Oliveira, Thayna S Vieira, Gustavo R Gilio, Caroline A Tomazelli, Bianca F Leonardi, Milene Ortiz-Silva, Luciano P Silva Junior, Eduardo H Moretti, Alexandre A Steiner, William T Festuccia","doi":"10.1007/s13105-023-00970-4","DOIUrl":"10.1007/s13105-023-00970-4","url":null,"abstract":"<p><p>Hepatocellular carcinoma (HCC) markedly enhances liver secretion of fibroblast growth factor 21 (FGF-21), a hepatokine that increases brown and subcutaneous inguinal white adipose tissues (BAT and iWAT, respectively) uncoupling protein 1 (UCP-1) content, thermogenesis and energy expenditure. Herein, we tested the hypothesis that an enhanced BAT and iWAT UCP-1-mediated thermogenesis induced by high levels of FGF-21 is involved in HCC-associated catabolic state and fat mass reduction. For this, we evaluated body weight and composition, liver mass and morphology, serum and tissue levels of FGF-21, BAT and iWAT UCP-1 content, and thermogenic capacity in mice with Pten deletion in hepatocytes that display a well-defined progression from steatosis to steatohepatitis (NASH) and HCC upon aging. Hepatocyte Pten deficiency promoted a progressive increase in liver lipid deposition, mass, and inflammation, culminating with NASH at 24 weeks and hepatomegaly and HCC at 48 weeks of age. NASH and HCC were associated with elevated liver and serum FGF-21 content and iWAT UCP-1 expression (browning), but reduced serum insulin, leptin, and adiponectin levels and BAT UCP-1 content and expression of sympathetically regulated gene glycerol kinase (GyK), lipoprotein lipase (LPL), and fatty acid transporter protein 1 (FATP-1), which altogether resulted in an impaired whole-body thermogenic capacity in response to CL-316,243. In conclusion, FGF-21 pro-thermogenic actions in BAT are context-dependent, not occurring in NASH and HCC, and UCP-1-mediated thermogenesis is not a major energy-expending process involved in the catabolic state associated with HCC induced by Pten deletion in hepatocytes.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"731-743"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9754300","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antifibrogenic and apoptotic effects of Ocoxin in cultured rat hepatic stellate cells. Ocoxin对培养的大鼠肝星状细胞的抗纤维化和凋亡作用。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2022-03-03 DOI: 10.1007/s13105-022-00878-5
Marina Ruiz de Galarreta, Elena Arriazu, María P Pérez de Obanos, Eduardo Ansorena, María J Iraburu

Ocoxin is a nutritional supplement that has been shown to exert antioxidant and immunomodulatory responses in patients with chronic hepatitis C. The present work aimed to determine the effects of Ocoxin on activated hepatic stellate cells (HSC), the cell type mainly responsible for collagen deposition in the fibrotic liver. Ocoxin was found to reduce the survival of a cell line of immortalized non-tumoral rat HSC in a dose-response fashion and to diminish collagen type I levels. This latter effect was observed even at doses not affecting cell survival, pointing to an antifibrogenic action for the supplement. The decrease in viability exerted by Ocoxin on HSC correlated with an increase in histone-associated fragments in the cytoplasm and with increased activity of caspase-3, indicating the induction of apoptosis. To determine the molecular mechanisms mediating Ocoxin-induced apoptosis, the activation of members of the MAPK family was analyzed. Incubation of HSC with Ocoxin caused a transient and dramatic enhancement on ERK, JNK, and p38 MAPK phosphorylation levels. Using specific inhibitors for these enzymes, p38 MAPK was identified as a key mediator of the apoptotic effect of Ocoxin on HSC.

Ocoxin是一种营养补充剂,已被证明在慢性丙型肝炎患者中发挥抗氧化和免疫调节作用。本工作旨在确定Ocoxin对活化的肝星状细胞(HSC)的影响,HSC是主要负责纤维化肝中胶原沉积的细胞类型。发现Ocoxin以剂量-反应方式降低永生化非肿瘤大鼠HSC细胞系的存活率,并降低I型胶原水平。即使在不影响细胞存活的剂量下也观察到后一种效果,这表明该补充剂具有抗纤维化作用。Ocoxin对HSC活力的降低与细胞质中组蛋白相关片段的增加和胱天蛋白酶-3活性的增加有关,表明细胞凋亡的诱导。为了确定介导Ocoxin诱导的细胞凋亡的分子机制,分析了MAPK家族成员的活化。HSC与Ocoxin孵育引起ERK、JNK和p38 MAPK磷酸化水平的短暂和显著增强。使用这些酶的特异性抑制剂,p38 MAPK被鉴定为Ocoxin对HSC凋亡作用的关键介质。
{"title":"Antifibrogenic and apoptotic effects of Ocoxin in cultured rat hepatic stellate cells.","authors":"Marina Ruiz de Galarreta, Elena Arriazu, María P Pérez de Obanos, Eduardo Ansorena, María J Iraburu","doi":"10.1007/s13105-022-00878-5","DOIUrl":"10.1007/s13105-022-00878-5","url":null,"abstract":"<p><p>Ocoxin is a nutritional supplement that has been shown to exert antioxidant and immunomodulatory responses in patients with chronic hepatitis C. The present work aimed to determine the effects of Ocoxin on activated hepatic stellate cells (HSC), the cell type mainly responsible for collagen deposition in the fibrotic liver. Ocoxin was found to reduce the survival of a cell line of immortalized non-tumoral rat HSC in a dose-response fashion and to diminish collagen type I levels. This latter effect was observed even at doses not affecting cell survival, pointing to an antifibrogenic action for the supplement. The decrease in viability exerted by Ocoxin on HSC correlated with an increase in histone-associated fragments in the cytoplasm and with increased activity of caspase-3, indicating the induction of apoptosis. To determine the molecular mechanisms mediating Ocoxin-induced apoptosis, the activation of members of the MAPK family was analyzed. Incubation of HSC with Ocoxin caused a transient and dramatic enhancement on ERK, JNK, and p38 MAPK phosphorylation levels. Using specific inhibitors for these enzymes, p38 MAPK was identified as a key mediator of the apoptotic effect of Ocoxin on HSC.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":"1 1","pages":"881-890"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635942/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49321989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Comprehensive analysis of epigenetic and epitranscriptomic genes' expression in human NAFLD. 人NAFLD表观遗传及表转录组基因表达的综合分析。
IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-11-01 Epub Date: 2023-08-25 DOI: 10.1007/s13105-023-00976-y
Jose M Herranz, Amaya López-Pascual, Alex Clavería-Cabello, Iker Uriarte, M Ujúe Latasa, Ainara Irigaray-Miramon, Elena Adán-Villaescusa, Borja Castelló-Uribe, Bruno Sangro, María Arechederra, Carmen Berasain, Matías A Avila, Maite G Fernández-Barrena

Non-alcoholic fatty liver disease (NAFLD) is a multifactorial condition with a complex etiology. Its incidence is increasing globally in parallel with the obesity epidemic, and it is now considered the most common liver disease in Western countries. The precise mechanisms underlying the development and progression of NAFLD are complex and still poorly understood. The dysregulation of epigenetic and epitranscriptomic mechanisms is increasingly recognized to play pathogenic roles in multiple conditions, including chronic liver diseases. Here, we have performed a comprehensive analysis of the expression of epigenetic and epitranscriptomic genes in a total of 903 liver tissue samples corresponding to patients with normal liver, obese patients, and patients with non-alcoholic fatty liver (NAFL) and non-alcoholic steatohepatitis (NASH), advancing stages in NAFLD progression. We integrated ten transcriptomic datasets in an unbiased manner, enabling their robust analysis and comparison. We describe the complete landscape of epigenetic and epitranscriptomic genes' expression along the course of the disease. We identify signatures of genes significantly dysregulated in association with disease progression, particularly with liver fibrosis development. Most of these epigenetic and epitranscriptomic effectors have not been previously described in human NAFLD, and their altered expression may have pathogenic implications. We also performed a comprehensive analysis of the expression of enzymes involved in the metabolism of the substrates and cofactors of epigenetic and epitranscriptomic effectors. This study provides novel information on NAFLD pathogenesis and may also guide the identification of drug targets to treat this condition and its progression towards hepatocellular carcinoma.

非酒精性脂肪肝(NAFLD)是一种病因复杂的多因素疾病。它的发病率在全球范围内与肥胖流行同时增加,现在被认为是西方国家最常见的肝病。NAFLD发展和进展的确切机制是复杂的,但仍知之甚少。表观遗传学和表转录组机制的失调越来越被认为在包括慢性肝病在内的多种疾病中发挥致病作用。在这里,我们对903个肝组织样本中表观遗传学和表转录组基因的表达进行了全面分析,这些样本分别对应于正常肝脏患者、肥胖患者、非酒精性脂肪肝(NAFL)和非酒精性脂性肝炎(NASH)患者,即NAFLD进展的晚期。我们以公正的方式整合了十个转录组数据集,使其能够进行稳健的分析和比较。我们描述了在疾病过程中表观遗传和表转录组基因表达的完整情况。我们确定了与疾病进展,特别是与肝纤维化发展相关的基因显著失调的特征。这些表观遗传学和表转录组效应子中的大多数以前没有在人类NAFLD中描述过,它们的表达改变可能具有致病意义。我们还对参与表观遗传和表转录组效应子的底物和辅因子代谢的酶的表达进行了全面分析。这项研究提供了关于NAFLD发病机制的新信息,也可能指导确定治疗这种疾病及其向肝细胞癌进展的药物靶点。
{"title":"Comprehensive analysis of epigenetic and epitranscriptomic genes' expression in human NAFLD.","authors":"Jose M Herranz, Amaya López-Pascual, Alex Clavería-Cabello, Iker Uriarte, M Ujúe Latasa, Ainara Irigaray-Miramon, Elena Adán-Villaescusa, Borja Castelló-Uribe, Bruno Sangro, María Arechederra, Carmen Berasain, Matías A Avila, Maite G Fernández-Barrena","doi":"10.1007/s13105-023-00976-y","DOIUrl":"10.1007/s13105-023-00976-y","url":null,"abstract":"<p><p>Non-alcoholic fatty liver disease (NAFLD) is a multifactorial condition with a complex etiology. Its incidence is increasing globally in parallel with the obesity epidemic, and it is now considered the most common liver disease in Western countries. The precise mechanisms underlying the development and progression of NAFLD are complex and still poorly understood. The dysregulation of epigenetic and epitranscriptomic mechanisms is increasingly recognized to play pathogenic roles in multiple conditions, including chronic liver diseases. Here, we have performed a comprehensive analysis of the expression of epigenetic and epitranscriptomic genes in a total of 903 liver tissue samples corresponding to patients with normal liver, obese patients, and patients with non-alcoholic fatty liver (NAFL) and non-alcoholic steatohepatitis (NASH), advancing stages in NAFLD progression. We integrated ten transcriptomic datasets in an unbiased manner, enabling their robust analysis and comparison. We describe the complete landscape of epigenetic and epitranscriptomic genes' expression along the course of the disease. We identify signatures of genes significantly dysregulated in association with disease progression, particularly with liver fibrosis development. Most of these epigenetic and epitranscriptomic effectors have not been previously described in human NAFLD, and their altered expression may have pathogenic implications. We also performed a comprehensive analysis of the expression of enzymes involved in the metabolism of the substrates and cofactors of epigenetic and epitranscriptomic effectors. This study provides novel information on NAFLD pathogenesis and may also guide the identification of drug targets to treat this condition and its progression towards hepatocellular carcinoma.</p>","PeriodicalId":16779,"journal":{"name":"Journal of physiology and biochemistry","volume":" ","pages":"901-924"},"PeriodicalIF":3.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636027/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10064948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
期刊
Journal of physiology and biochemistry
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1