N. O. Kudryashova, A. Zhigach, K. Zhudenkov, N. Glushchenko
{"title":"Particle diameter, phase composition, surface area and film thickness of copper nanoparticles as predictors of antibacterial activity","authors":"N. O. Kudryashova, A. Zhigach, K. Zhudenkov, N. Glushchenko","doi":"10.17537/icmbb22.52","DOIUrl":"https://doi.org/10.17537/icmbb22.52","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"289 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134131770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"On spectral analysis of the regulation of the main cardiac rhythm","authors":"A. Moskalenko, S. Makhortykh","doi":"10.17537/icmbb22.13","DOIUrl":"https://doi.org/10.17537/icmbb22.13","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132781493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
V. Rudnev, K. Nikolsky, D. V. Petrovsky, L. Kulikova, A. Kaysheva, A. Efimov
{"title":"A study of the stability of 3β-corner structural motifs","authors":"V. Rudnev, K. Nikolsky, D. V. Petrovsky, L. Kulikova, A. Kaysheva, A. Efimov","doi":"10.17537/icmbb22.30","DOIUrl":"https://doi.org/10.17537/icmbb22.30","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"1934 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128835322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
V. Bystrov, E. Paramonova, P. S. Zelenovsky, V. Fridkin, T. Lin, H. Shen, X. Meng
{"title":"Photoelectronic properties of diphenylalanine peptide nanotubes","authors":"V. Bystrov, E. Paramonova, P. S. Zelenovsky, V. Fridkin, T. Lin, H. Shen, X. Meng","doi":"10.17537/icmbb22.24","DOIUrl":"https://doi.org/10.17537/icmbb22.24","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"221 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131851218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
E. Deryusheva, E. Nemashkalova, M. Shevelyova, E. Litus
{"title":"Bioinformatic search and formation of a panel of serum albumin ligands that modulate its interaction with Aβ-peptide","authors":"E. Deryusheva, E. Nemashkalova, M. Shevelyova, E. Litus","doi":"10.17537/icmbb22.1","DOIUrl":"https://doi.org/10.17537/icmbb22.1","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"261 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117277974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Khanina, S. Volobuev, V. Smirnov, M. Tutukina, P. Shelyakin, M. Bobrovsky
{"title":"Diversity of fungal and bacterial communities and dynamics of physicochemical treats of wood of broad-leaved tree species and European spruce during decomposition after a mass windthrow","authors":"L. Khanina, S. Volobuev, V. Smirnov, M. Tutukina, P. Shelyakin, M. Bobrovsky","doi":"10.17537/icmbb22.48","DOIUrl":"https://doi.org/10.17537/icmbb22.48","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"29 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124041155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Interaction of tricyclic antidepressants with the NMDA receptor according to computer simulation data","authors":"D. Belinskaia, N. Shestakova","doi":"10.17537/icmbb22.6","DOIUrl":"https://doi.org/10.17537/icmbb22.6","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122015845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. V. Tretyakova, E. O. Gerasimova, P. Krylov, V. Novochadov
{"title":"Phylogenetic analysis of the lubricin protein and surfactant-associated proteins B and C","authors":"A. V. Tretyakova, E. O. Gerasimova, P. Krylov, V. Novochadov","doi":"10.17537/icmbb22.18","DOIUrl":"https://doi.org/10.17537/icmbb22.18","url":null,"abstract":"","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117049019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The report provides an overview of clustering methods used in gene expression research. The review describes the classic methods of "flat" and hierarchical clustering, and also methods based on Evolutionary Computation and Formal Concept Analysis. The use of Evolutionary Computation in clustering makes it possible to effectively use multi-criteria optimization in solving clustering problems. The analysis of formal concepts makes it possible to investigate cluster hierarchies as a result of precise clustering of gene expression data. The review aims to draw an attention of specialists in the field of molecular biology and computer science to joint research.
{"title":"Clustering Methods in Gene Expression Research","authors":"M. Bogatyrev","doi":"10.17537/icmbb20.27","DOIUrl":"https://doi.org/10.17537/icmbb20.27","url":null,"abstract":"The report provides an overview of clustering methods used in gene expression research. The review describes the classic methods of \"flat\" and hierarchical clustering, and also methods based on Evolutionary Computation and Formal Concept Analysis. The use of Evolutionary Computation in clustering makes it possible to effectively use multi-criteria optimization in solving clustering problems. The analysis of formal concepts makes it possible to investigate cluster hierarchies as a result of precise clustering of gene expression data. The review aims to draw an attention of specialists in the field of molecular biology and computer science to joint research.","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"127 3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2020-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124237029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
P. Onishchenko, K. Klyshnikov, M. Rezvova, E. Ovcharenko
Aim. To develop an algorithm for the automated functional design of the heart valve leaflet apparatus.Methods. The geometry of the aortic valve leaflet was designed in the Matlab programming environment (MathWorks, Massachusetts, USA). Numerical modeling of the opening process was performed using Abaqus/CAE (Dassault Systemes, France).Results. We developed an algorithm, with the help of which a set of models of the leaflet apparatus was designed. 8 models were subjected to numerical modeling of the stress-strain state. The locking pressure simulation has shown that the smallest von Mises stress value was recorded for a sample with a larger surface area of the leaflet belly and it equals 0.422 MPa. The results obtained show that the value of the radius of curvature significantly affects the behavior of the entire valve, which leads to the conclusion that it is necessary to carefully select the design of the valve apparatus for its correct functioning.Conclusion. The study provides the primary confirmation that the concept of the algorithm is efficient for the automated functional design of the aortic heart valve leaflet apparatus.
{"title":"The Concept of Automated Functional Design of Heart Valve Prostheses","authors":"P. Onishchenko, K. Klyshnikov, M. Rezvova, E. Ovcharenko","doi":"10.17537/icmbb20.16","DOIUrl":"https://doi.org/10.17537/icmbb20.16","url":null,"abstract":"Aim. To develop an algorithm for the automated functional design of the heart valve leaflet apparatus.Methods. The geometry of the aortic valve leaflet was designed in the Matlab programming environment (MathWorks, Massachusetts, USA). Numerical modeling of the opening process was performed using Abaqus/CAE (Dassault Systemes, France).Results. We developed an algorithm, with the help of which a set of models of the leaflet apparatus was designed. 8 models were subjected to numerical modeling of the stress-strain state. The locking pressure simulation has shown that the smallest von Mises stress value was recorded for a sample with a larger surface area of the leaflet belly and it equals 0.422 MPa. The results obtained show that the value of the radius of curvature significantly affects the behavior of the entire valve, which leads to the conclusion that it is necessary to carefully select the design of the valve apparatus for its correct functioning.Conclusion. The study provides the primary confirmation that the concept of the algorithm is efficient for the automated functional design of the aortic heart valve leaflet apparatus. ","PeriodicalId":168323,"journal":{"name":"Proceedings of the International Conference \"Mathematical Biology and Bioinformatics\"","volume":"84 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2020-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114555084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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