Daniel Daye, Rafael de la Parra, Jeremy Vaudo, Jessica Harvey, Guy Harvey, Mahmood Shivji, Bradley Wetherbee
Context
Satellite telemetry has revolutionised the study of animal movement, particularly for mobile marine animals, whose movements and habitat make consistent, long-term observation difficult.
Aims
Summarise the movements of Rio Lady, a mature female whale shark (Rhincodon typus), to characterise these movements, and to predict expected behaviour throughout the Gulf of Mexico (GOM).
Methods
Rio Lady was tracked using satellite telemetry for over 1600 days, generating over 1400 locations and travelling over 40,000 km. State–space and move persistence modelling enabled characterisation of behaviour, and machine learning (ML) enabled the development of habitat-suitability models to predict habitat utilisation, on the basis of location transmissions and their environmental covariates.
Key results
Rio Lady exhibited annually consistent patterns of movements among three regions within the GOM. Final ML models produced seasonally dynamic predictions of habitat use throughout the GOM.
Conclusions
The application of these methods to long-term location data exemplifies how long-term movement patterns and core areas can be discovered and predicted for marine animals.
Implications
Despite our limited dataset, our integrative approach advances methods to summarise and predict behaviour of mobile species and improve understanding of their ecology.
背景卫星遥测技术彻底改变了对动物运动的研究,尤其是对流动性海洋动物的研究,因为海洋动物的运动和栖息地使得很难对其进行持续、长期的观测。目的总结成熟雌性鲸鲨(Rhincodon typus)Rio Lady 的运动情况,描述其运动特征,并预测其在整个墨西哥湾(GOM)的预期行为。方法 使用卫星遥测技术对 Rio Lady 进行了 1600 多天的跟踪,共产生了 1400 多个地点,行程超过 40,000 公里。通过状态空间和移动持续性建模确定了行为特征,通过机器学习(ML)开发了栖息地适宜性模型,以根据位置传输及其环境协变量预测栖息地利用情况。主要成果 里约淑女号在 GOM 三个区域之间表现出每年一致的移动模式。最终的 ML 模型对整个 GOM 的栖息地利用情况进行了季节性动态预测。结论将这些方法应用于长期定位数据体现了如何发现和预测海洋动物的长期运动模式和核心区域。意义尽管我们的数据集有限,但我们的综合方法推进了总结和预测移动物种行为的方法,并增进了对其生态学的了解。
{"title":"Tracking 4 years in the life of a female whale shark shows consistent migrations in the Gulf of Mexico and Caribbean","authors":"Daniel Daye, Rafael de la Parra, Jeremy Vaudo, Jessica Harvey, Guy Harvey, Mahmood Shivji, Bradley Wetherbee","doi":"10.1071/mf23147","DOIUrl":"https://doi.org/10.1071/mf23147","url":null,"abstract":"<strong> Context</strong><p>Satellite telemetry has revolutionised the study of animal movement, particularly for mobile marine animals, whose movements and habitat make consistent, long-term observation difficult.</p><strong> Aims</strong><p>Summarise the movements of Rio Lady, a mature female whale shark (<i>Rhincodon typus</i>), to characterise these movements, and to predict expected behaviour throughout the Gulf of Mexico (GOM).</p><strong> Methods</strong><p>Rio Lady was tracked using satellite telemetry for over 1600 days, generating over 1400 locations and travelling over 40,000 km. State–space and move persistence modelling enabled characterisation of behaviour, and machine learning (ML) enabled the development of habitat-suitability models to predict habitat utilisation, on the basis of location transmissions and their environmental covariates.</p><strong> Key results</strong><p>Rio Lady exhibited annually consistent patterns of movements among three regions within the GOM. Final ML models produced seasonally dynamic predictions of habitat use throughout the GOM.</p><strong> Conclusions</strong><p>The application of these methods to long-term location data exemplifies how long-term movement patterns and core areas can be discovered and predicted for marine animals.</p><strong> Implications</strong><p>Despite our limited dataset, our integrative approach advances methods to summarise and predict behaviour of mobile species and improve understanding of their ecology.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"25 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141572418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Judith Das, Ashna Shanmughan, Neelesh Dahanukar, Rajeev Raghavan, K. Ranjeet
Context
The Indo-Pacific tarpon (Megalops cyprinoides) is a diadromous species, for which limited information is available regarding demographics and exploitation levels.
Aim
We aimed to fill critical knowledge gaps on population dynamics and exploitation levels of M. cyprinoides along the south-western coast of India.
Methods
Structured length frequency-based population dynamics models were used to determine the growth, mortality and exploitation levels of the species.
Key results
Habitat-related variations in growth patterns were found, with positive allometric growth in the marine (b = 3.208), and negative allometric growth in freshwater (2.759) and estuarine (2.876) habitats. Different estimates of natural mortality suggested high fishing pressure, potentially threatening the long-term sustainability of local M. cyprinoides populations.
Conclusions
This study provides the first comprehensive estimates of demographic parameters of M. cyprinoides, and contributes significantly to our knowledge required for the management of Indo-Pacific tarpon fisheries. The critical need to address overfishing and habitat degradation to ensure long-term sustainability of local populations is highlighted.
Implications
Knowledge generated through this study will help inform improved conservation assessments of this ‘Data Deficient’ species, in addition to informing the development and implementation of conservation and management plans.
{"title":"Bridging knowledge gaps for the conservation and management of a ‘Data Deficient’, diadromous fish: the Indo-Pacific tarpon, Megalops cyprinoides","authors":"Judith Das, Ashna Shanmughan, Neelesh Dahanukar, Rajeev Raghavan, K. Ranjeet","doi":"10.1071/mf23222","DOIUrl":"https://doi.org/10.1071/mf23222","url":null,"abstract":"<strong> Context</strong><p>The Indo-Pacific tarpon (<i>Megalops cyprinoides</i>) is a diadromous species, for which limited information is available regarding demographics and exploitation levels.</p><strong> Aim</strong><p>We aimed to fill critical knowledge gaps on population dynamics and exploitation levels of <i>M. cyprinoides</i> along the south-western coast of India.</p><strong> Methods</strong><p>Structured length frequency-based population dynamics models were used to determine the growth, mortality and exploitation levels of the species.</p><strong> Key results</strong><p>Habitat-related variations in growth patterns were found, with positive allometric growth in the marine (<i>b</i> = 3.208), and negative allometric growth in freshwater (2.759) and estuarine (2.876) habitats. Different estimates of natural mortality suggested high fishing pressure, potentially threatening the long-term sustainability of local <i>M. cyprinoides</i> populations.</p><strong> Conclusions</strong><p>This study provides the first comprehensive estimates of demographic parameters of <i>M. cyprinoides</i>, and contributes significantly to our knowledge required for the management of Indo-Pacific tarpon fisheries. The critical need to address overfishing and habitat degradation to ensure long-term sustainability of local populations is highlighted.</p><strong> Implications</strong><p>Knowledge generated through this study will help inform improved conservation assessments of this ‘Data Deficient’ species, in addition to informing the development and implementation of conservation and management plans.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"17 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141572693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The rapid intensification of human impacts on rivers is a major threat for the provision of key ecosystem services for societies. In this context, many of these services rely on the ecological functions performed by macroinvertebrates. Therefore, understanding the relationship between human impacts and the functional diversity of macroinvertebrates is urgent.
Aims
We aimed at analysing the relationship between human impact and the functional diversity of macroinvertebrates in rivers of agricultural lands of Argentina.
Methods
We sampled seven rivers of central Argentina during three seasons (spring, autumn and winter). In each site, we measured pesticides, metals, chlorophyll-a, nutrients and the taxonomic and functional diversity of macroinvertebrates. We summarised the environmental information using principal-component analysis and assessed the relationship between the assemblage metrics with the first three principal components.
Key results
We found that functional metrics presented a negative relationship with the human-impact gradient in the three seasons. However, taxonomic metrics showed less sensitivity.
Conclusion
The functional diversity of macroinvertebrates, but not the taxonomic diversity, decreases with increasing human impacts on rivers.
Implications
Our result implies that functional metrics should be included in environmental monitoring in agricultural lands of Argentina.
{"title":"Benthic macroinvertebrates in rivers of agricultural lands in Argentina: the functional diversity response to environmental stress","authors":"C. A. Ávalos, M. Saigo, M. Licursi","doi":"10.1071/mf24091","DOIUrl":"https://doi.org/10.1071/mf24091","url":null,"abstract":"<strong> Context</strong><p>The rapid intensification of human impacts on rivers is a major threat for the provision of key ecosystem services for societies. In this context, many of these services rely on the ecological functions performed by macroinvertebrates. Therefore, understanding the relationship between human impacts and the functional diversity of macroinvertebrates is urgent.</p><strong> Aims</strong><p>We aimed at analysing the relationship between human impact and the functional diversity of macroinvertebrates in rivers of agricultural lands of Argentina.</p><strong> Methods</strong><p>We sampled seven rivers of central Argentina during three seasons (spring, autumn and winter). In each site, we measured pesticides, metals, chlorophyll-<i>a</i>, nutrients and the taxonomic and functional diversity of macroinvertebrates. We summarised the environmental information using principal-component analysis and assessed the relationship between the assemblage metrics with the first three principal components.</p><strong> Key results</strong><p>We found that functional metrics presented a negative relationship with the human-impact gradient in the three seasons. However, taxonomic metrics showed less sensitivity.</p><strong> Conclusion</strong><p>The functional diversity of macroinvertebrates, but not the taxonomic diversity, decreases with increasing human impacts on rivers.</p><strong> Implications</strong><p>Our result implies that functional metrics should be included in environmental monitoring in agricultural lands of Argentina.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"30 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141572691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gustavo Martins Rocha, Jordana de Carvalho e Féres, Gustavo Meira Kandler, Renata Caiado Cagnin, César Alexandro da Silva, Sarah Karoline Rodrigues, Bethânia Dal’Col Lehrback, Kamila Cezar Gramlich, Renato Rodrigues Neto, Fabian Sá, Luiz Fernando Loureiro Fernandes
Context and aims
A reliable bioindicator index of eutrophication is still lacking for monitoring zooplankton in saline, coastal lagoons. We aimed to establish plankton bioindicators of eutrophication that are not affected by salinity variation, which is essential for environmental monitoring of coastal lagoons.
Methods
Sampling was conducted for microprotozooplankton, chlorophyll-a, nutrients and sterols in eight tropical coastal lagoons with different saline and nutrient concentrations. A testate amoeba and rotifer bioindication index of eutrophication (T&R index) was proposed after establishing a list of indicator species on the basis of five statistical criteria and one bibliographic criterion.
Key results
Selected species, based on the six criteria, were Arcella hemisphaerica, Brachionus plicatilis, Galeripora (Arcella) discoides, Netzelia corona, Lecane closterocerca, Lepadela patella and Testudinela patina. Biodiversity measures, traditionally used in biomonitoring, varied negatively with salinity (r = −0.60 for Margalef richness and −0.59 for Shannon diversity) and were not correlated with nutrient concentrations. Conversely, the T&R index showed no correlation with salinity (r = 0.002) and was positively correlated with the trophic-state index (TSI) (r = 0.62).
Conclusions and implications
Our results showed that specific patterns of indicator microprotozooplankton species can effectively diagnose organic pollution in coastal lagoons and their use is a more suitable approach than is the use of community indicators such as richness, evenness and diversity, traditionally used for that task.
{"title":"Microprotozooplankton as eutrophication bioindicator for tropical coastal lagoons","authors":"Gustavo Martins Rocha, Jordana de Carvalho e Féres, Gustavo Meira Kandler, Renata Caiado Cagnin, César Alexandro da Silva, Sarah Karoline Rodrigues, Bethânia Dal’Col Lehrback, Kamila Cezar Gramlich, Renato Rodrigues Neto, Fabian Sá, Luiz Fernando Loureiro Fernandes","doi":"10.1071/mf23122","DOIUrl":"https://doi.org/10.1071/mf23122","url":null,"abstract":"<strong> Context and aims</strong><p>A reliable bioindicator index of eutrophication is still lacking for monitoring zooplankton in saline, coastal lagoons. We aimed to establish plankton bioindicators of eutrophication that are not affected by salinity variation, which is essential for environmental monitoring of coastal lagoons.</p><strong> Methods</strong><p>Sampling was conducted for microprotozooplankton, chlorophyll-<i>a</i>, nutrients and sterols in eight tropical coastal lagoons with different saline and nutrient concentrations. A testate amoeba and rotifer bioindication index of eutrophication (T&R index) was proposed after establishing a list of indicator species on the basis of five statistical criteria and one bibliographic criterion.</p><strong> Key results</strong><p>Selected species, based on the six criteria, were <i>Arcella hemisphaerica, Brachionus plicatilis, Galeripora</i> (<i>Arcella</i>) <i>discoides, Netzelia corona, Lecane closterocerca, Lepadela patella</i> and <i>Testudinela patina</i>. Biodiversity measures, traditionally used in biomonitoring, varied negatively with salinity (<i>r</i> = −0.60 for Margalef richness and −0.59 for Shannon diversity) and were not correlated with nutrient concentrations. Conversely, the T&R index showed no correlation with salinity (<i>r</i> = 0.002) and was positively correlated with the trophic-state index (TSI) (<i>r</i> = 0.62).</p><strong> Conclusions and implications</strong><p>Our results showed that specific patterns of indicator microprotozooplankton species can effectively diagnose organic pollution in coastal lagoons and their use is a more suitable approach than is the use of community indicators such as richness, evenness and diversity, traditionally used for that task.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"369 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141572692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andrew Jansen, Steve van Bodegraven, Andrew Esparon, Varma Gadhiraju, Samantha Walker, Constanza Buccella, Kris Bock, David Loewensteiner, Thomas J. Mooney, Andrew J. Harford, Renee E. Bartolo, Chris L. Humphrey
Context
The application of deep learning to monitor tropical freshwater fish assemblages and detect potential anthropogenic impacts is poorly understood.
Aims
This study aimed to compare the results between trained human observers and deep learning, using the fish monitoring program for impact detection at Ranger Uranium Mine as a case study.
Methods
Fish abundance (MaxN) was measured by trained observers and deep learning. Microsoft’s Azure Custom Vision was used to annotate, label and train deep learning models with fish imagery. PERMANOVA was used to compare method, year and billabong.
Key results
Deep learning model training on 23 fish taxa resulted in mean average precision, precision and recall of 83.6, 81.3 and 89.1%, respectively. PERMANOVA revealed significant differences between the two methods, but no significant interaction was observed in method, billabong and year.
Conclusions
These results suggest that the distribution of fish taxa and their relative abundances determined by deep learning and trained observers reflect similar changes between control and exposed billabongs over a 3-year period.
Implications
The implications of these method-related differences should be carefully considered in the context of impact detection, and further research is required to more accurately characterise small-growing schooling fish species, which were found to contribute significantly to the observed differences.
{"title":"Monitoring tropical freshwater fish with underwater videography and deep learning","authors":"Andrew Jansen, Steve van Bodegraven, Andrew Esparon, Varma Gadhiraju, Samantha Walker, Constanza Buccella, Kris Bock, David Loewensteiner, Thomas J. Mooney, Andrew J. Harford, Renee E. Bartolo, Chris L. Humphrey","doi":"10.1071/mf23166","DOIUrl":"https://doi.org/10.1071/mf23166","url":null,"abstract":"<strong> Context</strong><p>The application of deep learning to monitor tropical freshwater fish assemblages and detect potential anthropogenic impacts is poorly understood.</p><strong> Aims</strong><p>This study aimed to compare the results between trained human observers and deep learning, using the fish monitoring program for impact detection at Ranger Uranium Mine as a case study.</p><strong> Methods</strong><p>Fish abundance (MaxN) was measured by trained observers and deep learning. Microsoft’s <i>Azure Custom Vision</i> was used to annotate, label and train deep learning models with fish imagery. PERMANOVA was used to compare method, year and billabong.</p><strong> Key results</strong><p>Deep learning model training on 23 fish taxa resulted in mean average precision, precision and recall of 83.6, 81.3 and 89.1%, respectively. PERMANOVA revealed significant differences between the two methods, but no significant interaction was observed in method, billabong and year.</p><strong> Conclusions</strong><p>These results suggest that the distribution of fish taxa and their relative abundances determined by deep learning and trained observers reflect similar changes between control and exposed billabongs over a 3-year period.</p><strong> Implications</strong><p>The implications of these method-related differences should be carefully considered in the context of impact detection, and further research is required to more accurately characterise small-growing schooling fish species, which were found to contribute significantly to the observed differences.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"7 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141551904","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
River regulation affect freshwater species by disrupting the natural flow regime and connectivity.
Aims
Investigate the impact of river regulation on platypus populations on four regulated rivers within the northern Murray–Darling Basin.
Methods
Assessment of hydrology, live trapping downstream of large dams, multi-species environmental DNA surveys in upstream and downstream sections.
Key results
There were significant changes in flow seasonality and cold-water pollution as a result of river regulation. Upstream sections experienced prolonged periods of ceased flow, most recently during an extreme drought between 2017 and 2020. eDNA surveys detected platypuses downstream of all dams but failed to find evidence of them upstream in two rivers, indicating possible local extinctions. Capture of four platypuses in the Severn River and four, in very poor condition, in the Peel River, and none in the Gwydir River or Pike Creek–Dumaresq River. Significant differences in macroinvertebrate communities, implying possible impacts on platypus diet.
Conclusions
River regulation and habitat fragmentation affect platypus populations, namely disappearance from upstream sections, low downstream capture rates and the poor body condition.
Implications
Urgent need for catchment-scale river management strategies that preserve ecological functions and connectivity and improve resilience to protect and sustain platypus populations, indicating directions for future research and conservation efforts.
背景河流治理会破坏自然水流系统和连通性,从而影响淡水物种。目的研究墨累-达令流域北部四条管制河流的河流管制对鸭嘴兽种群的影响。方法评估水文、在大坝下游进行活体诱捕、在上游和下游河段进行多物种环境 DNA 调查。主要结果由于河流治理,水流季节性和冷水污染发生了显著变化。eDNA调查在所有大坝下游都发现了鸭嘴兽,但在两条河流的上游却没有发现鸭嘴兽,这表明鸭嘴兽可能在当地灭绝。在塞文河(Severn River)捕获了四只鸭嘴兽,在皮尔河(Peel River)捕获了四只状态极差的鸭嘴兽,而在盖迪尔河(Gwydir River)和派克溪-杜马雷斯克河(Pike Creek-Dumaresq River)均未捕获鸭嘴兽。大型无脊椎动物群落存在显著差异,这意味着鸭嘴兽的饮食可能受到影响。结论河流调节和栖息地破碎化会影响鸭嘴兽的数量,即从上游河段消失、下游捕获率低和身体状况差。启示迫切需要制定流域尺度的河流管理策略,以保护生态功能和连通性,提高恢复能力,从而保护和维持鸭嘴兽种群,这为未来的研究和保护工作指明了方向。
{"title":"Impacts of river regulation and fragmentation on platypuses in the northern Murray–Darling Basin","authors":"Jasmine Khurana, Gilad Bino, Tahneal Hawke","doi":"10.1071/mf24037","DOIUrl":"https://doi.org/10.1071/mf24037","url":null,"abstract":"<strong> Context</strong><p>River regulation affect freshwater species by disrupting the natural flow regime and connectivity.</p><strong> Aims</strong><p>Investigate the impact of river regulation on platypus populations on four regulated rivers within the northern Murray–Darling Basin.</p><strong> Methods</strong><p>Assessment of hydrology, live trapping downstream of large dams, multi-species environmental DNA surveys in upstream and downstream sections.</p><strong> Key results</strong><p>There were significant changes in flow seasonality and cold-water pollution as a result of river regulation. Upstream sections experienced prolonged periods of ceased flow, most recently during an extreme drought between 2017 and 2020. eDNA surveys detected platypuses downstream of all dams but failed to find evidence of them upstream in two rivers, indicating possible local extinctions. Capture of four platypuses in the Severn River and four, in very poor condition, in the Peel River, and none in the Gwydir River or Pike Creek–Dumaresq River. Significant differences in macroinvertebrate communities, implying possible impacts on platypus diet.</p><strong> Conclusions</strong><p>River regulation and habitat fragmentation affect platypus populations, namely disappearance from upstream sections, low downstream capture rates and the poor body condition.</p><strong> Implications</strong><p>Urgent need for catchment-scale river management strategies that preserve ecological functions and connectivity and improve resilience to protect and sustain platypus populations, indicating directions for future research and conservation efforts.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"23 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141501718","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The prediction of freshwater quality is important for detecting pollution risks and assessing changes in freshwater ecosystems. As a high-precision interpolation method, Kriging was able to predict freshwater quality by using previously monitored data. However, how to select the key parameters, regression functions and correlation functions of Kriging method in the process of improving prediction accuracy is still a bottleneck.
Aims
This study aims to propose an adaptive weighted-average Kriging (AWAK) method to further enhance the accuracy of freshwater-quality predictions.
Methods
The AWAK method consists of four main steps. First, the key parameters influencing pollution indicators are selected by FPS method. Subsequently, six different Kriging candidate models are constructed by using regression and correlation functions with different characteristics. Then, an enhanced-likelihood function is used to determine the weights of the six Kriging candidate models. Finally, AWAK is built by weighted sum of these six Kriging models.
Key results
The AWAK outperformed traditional Kriging in predicting pH and dissolved oxygen, significantly reducing prediction errors.
Conclusions
By employing the AWAK method, this study successfully improved the accuracy of freshwater-quality predictions.
Implications
The introduction of the AWAK provides an effective approach in the field of freshwater ecology.
背景淡水水质预测对于检测污染风险和评估淡水生态系统的变化非常重要。作为一种高精度的插值方法,克里金法能够利用先前的监测数据预测淡水水质。然而,在提高预测精度的过程中,如何选择 Kriging 方法的关键参数、回归函数和相关函数仍是一个瓶颈。目的 本研究旨在提出一种自适应加权平均克里金法(AWAK),以进一步提高淡水水质预测的准确性。方法 AWAK 方法包括四个主要步骤。首先,通过 FPS 方法选择影响污染指标的关键参数。然后,利用具有不同特征的回归函数和相关函数构建六个不同的克里金候选模型。然后,使用增强似然函数确定六个 Kriging 候选模型的权重。最后,通过这六个 Kriging 模型的加权和建立 AWAK。主要结果 AWAK 在预测 pH 值和溶解氧方面优于传统克里金法,大大减少了预测误差。结论通过采用 AWAK 方法,本研究成功提高了淡水水质预测的准确性。意义引入 AWAK 为淡水生态学领域提供了一种有效的方法。
{"title":"An adaptive weighted-average Kriging method applied to monitoring of freshwater ecosystems","authors":"Qilu Liu, Jingfang Shen, Yaohui Li","doi":"10.1071/mf24003","DOIUrl":"https://doi.org/10.1071/mf24003","url":null,"abstract":"<strong> Context</strong><p>The prediction of freshwater quality is important for detecting pollution risks and assessing changes in freshwater ecosystems. As a high-precision interpolation method, Kriging was able to predict freshwater quality by using previously monitored data. However, how to select the key parameters, regression functions and correlation functions of Kriging method in the process of improving prediction accuracy is still a bottleneck.</p><strong> Aims</strong><p>This study aims to propose an adaptive weighted-average Kriging (AWAK) method to further enhance the accuracy of freshwater-quality predictions.</p><strong> Methods</strong><p>The AWAK method consists of four main steps. First, the key parameters influencing pollution indicators are selected by FPS method. Subsequently, six different Kriging candidate models are constructed by using regression and correlation functions with different characteristics. Then, an enhanced-likelihood function is used to determine the weights of the six Kriging candidate models. Finally, AWAK is built by weighted sum of these six Kriging models.</p><strong> Key results</strong><p>The AWAK outperformed traditional Kriging in predicting pH and dissolved oxygen, significantly reducing prediction errors.</p><strong> Conclusions</strong><p>By employing the AWAK method, this study successfully improved the accuracy of freshwater-quality predictions.</p><strong> Implications</strong><p>The introduction of the AWAK provides an effective approach in the field of freshwater ecology.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"22 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141528779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jordana Rangely, Matheus de Barros, Daniele Souto-Vieira, Maria das Neves Tayana S. C. Oliveira, Victor E. L. da Silva, Ivan Oliveira de Assis, Nidia N. Fabré
Context
Disentangling mechanisms influencing the seasonal and spatial distribution of fish is essential to understanding population dynamics. In the south-western Atlantic, the sympatric mullets Mugil curema and M. rubrioculus are closely related and use habitat similarly. However, which processes allow their coexistence is unknown.
Aims
We tested the hypothesis that the two species exhibit temporally and spatially decoupled habitat-use patterns to allow sympatry due to different responses to environmental drivers.
Methods
Bayesian zero-inflated count models were used to unravel spatial and temporal distribution patterns of those species in a south-western Atlantic lagoon.
Key results
The two species display different distributions within the estuary, being spatially and temporally segregated, with M. curema mostly inhabiting the inner estuary and M. rubrioculus inhabiting coastal marine habitats.
Conclusions
This decoupling in habitat use might be driven by distinct responses to environmental variability: M. curema is influenced by factors such as temperature and dissolved oxygen, whereas M. rubrioculus is influenced by variations in salinity. We suggest that the studied species evolved divergent responses to environmental variation to allow coexistence.
Implications
This study suggests that environmental factors drive mullet abundance, and that zero-inflated count models incorporating those drivers are therefore useful in predicting their spatial and temporal distribution, as well as in standardising abundance trends for stock assessment efforts.
背景解析影响鱼类季节和空间分布的机制对了解种群动态至关重要。在大西洋西南部,同域鲻鱼 Mugil curema 和 M. rubrioculus 亲缘很近,对栖息地的利用也很相似。然而,它们共存的过程是什么尚不清楚。目的 我们检验了一个假设,即这两个物种由于对环境驱动因素的不同反应而表现出时间和空间上脱钩的生境利用模式,从而实现了共生。方法使用贝叶斯零膨胀计数模型来揭示大西洋西南部泻湖中这两个物种的时空分布模式。主要结果这两个物种在河口内的分布不同,在空间和时间上相互隔离,M. curema 主要栖息在河口内部,而 M. rubrioculus 则栖息在沿海海洋栖息地。结论这种栖息地利用的分离可能是由对环境变化的不同反应驱动的:M.curema受温度和溶解氧等因素的影响,而M. rubrioculus则受盐度变化的影响。我们认为,所研究的物种进化出了对环境变化的不同反应,从而实现了共存。意义 本研究表明,环境因素驱动鲻鱼的丰度,因此,包含这些驱动因素的零膨胀计数模型有助于预测鲻鱼的空间和时间分布,并为种群评估工作提供标准化的丰度趋势。
{"title":"Congeneric and sympatric tropical mullets respond differently to environmental variability: insights into coexistence","authors":"Jordana Rangely, Matheus de Barros, Daniele Souto-Vieira, Maria das Neves Tayana S. C. Oliveira, Victor E. L. da Silva, Ivan Oliveira de Assis, Nidia N. Fabré","doi":"10.1071/mf23108","DOIUrl":"https://doi.org/10.1071/mf23108","url":null,"abstract":"<strong> Context</strong><p>Disentangling mechanisms influencing the seasonal and spatial distribution of fish is essential to understanding population dynamics. In the south-western Atlantic, the sympatric mullets <i>Mugil curema</i> and <i>M. rubrioculus</i> are closely related and use habitat similarly. However, which processes allow their coexistence is unknown.</p><strong> Aims</strong><p>We tested the hypothesis that the two species exhibit temporally and spatially decoupled habitat-use patterns to allow sympatry due to different responses to environmental drivers.</p><strong> Methods</strong><p>Bayesian zero-inflated count models were used to unravel spatial and temporal distribution patterns of those species in a south-western Atlantic lagoon.</p><strong> Key results</strong><p>The two species display different distributions within the estuary, being spatially and temporally segregated, with <i>M. curema</i> mostly inhabiting the inner estuary and <i>M. rubrioculus</i> inhabiting coastal marine habitats.</p><strong> Conclusions</strong><p>This decoupling in habitat use might be driven by distinct responses to environmental variability: <i>M. curema</i> is influenced by factors such as temperature and dissolved oxygen, whereas <i>M. rubrioculus</i> is influenced by variations in salinity. We suggest that the studied species evolved divergent responses to environmental variation to allow coexistence.</p><strong> Implications</strong><p>This study suggests that environmental factors drive mullet abundance, and that zero-inflated count models incorporating those drivers are therefore useful in predicting their spatial and temporal distribution, as well as in standardising abundance trends for stock assessment efforts.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"127 Suppl 4 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Metabolic balance determines whether an ecosystem acts as a source or sink of carbon dioxide (CO2) and considering that a substantial portion of inland aquatic ecosystems act as a source of CO2 to the atmosphere, it is important to highlight that there is still no agreement on how global change will affect the ecosystem metabolic-balance response. It then becomes more important to study the interactions between global-change drivers and aquatic metabolism.
Aims
Assess possible shifts in ecosystem metabolic balance owing to global-change factors.
Methods
Collapsed factorial designs and novel experimental units have been used to study responses to future conditions.
Key results
In the study site, bacterial production was not affected by an increased temperature alone; however, increased nutrient availability may unmask UV or CO2 as a source of stress to bacteria. A synergistic effect between temperature and the combined effect of nutrients and CO2 on primary producers was also found.
Conclusions
In future scenarios, some heterotrophic inland water ecosystems may shift from heterotrophic to autotrophic states and therefore act as CO2 sinks.
Implications
This study provides a framework to support a deepening of knowledge on this topic.
{"title":"Assessing the aquatic metabolic-balance response to future condition in a Mediterranean site: from an experimental-design perspective","authors":"Ismael L. Lozano","doi":"10.1071/mf23137","DOIUrl":"https://doi.org/10.1071/mf23137","url":null,"abstract":"<strong> Context</strong><p>Metabolic balance determines whether an ecosystem acts as a source or sink of carbon dioxide (CO<sub>2</sub>) and considering that a substantial portion of inland aquatic ecosystems act as a source of CO<sub>2</sub> to the atmosphere, it is important to highlight that there is still no agreement on how global change will affect the ecosystem metabolic-balance response. It then becomes more important to study the interactions between global-change drivers and aquatic metabolism.</p><strong> Aims</strong><p>Assess possible shifts in ecosystem metabolic balance owing to global-change factors.</p><strong> Methods</strong><p>Collapsed factorial designs and novel experimental units have been used to study responses to future conditions.</p><strong> Key results</strong><p>In the study site, bacterial production was not affected by an increased temperature alone; however, increased nutrient availability may unmask UV or CO<sub>2</sub> as a source of stress to bacteria. A synergistic effect between temperature and the combined effect of nutrients and CO<sub>2</sub> on primary producers was also found.</p><strong> Conclusions</strong><p>In future scenarios, some heterotrophic inland water ecosystems may shift from heterotrophic to autotrophic states and therefore act as CO<sub>2</sub> sinks.</p><strong> Implications</strong><p>This study provides a framework to support a deepening of knowledge on this topic.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"16 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alistar I. Robertson, Irena Zagorskis, Murray Logan, Paul Dixon, Paul Daniel
Context
Restored mangrove forests are threatened by the restricted range of species used. Xylocarpus granatum has excellent timber and could add value in mangrove plantings.
Methods
Forest structure and environmental variables were measured at 40 sites in northern Australia and Papua New Guinea. Tree growth was measured at 18 sites. Boosted regression tree modelling identified environmental predictor variables for above-ground biomass for X. granatum (AGBX), mean annual increment in diameter at breast height (DBH) for X. granatum (MAIX) and wood production (PW).
Aims
To determine the environmental conditions under which X. granatum has the greatest biomass and growth.
Key results
Increasing stem density, basal area and AGB of other tree species were most important in limiting AGBX. MAIX (range 0.03–0.55 cm year−1) was greatest when sediment redox potential was >100 mV and mean annual catchment rainfall was >4000 mm. MAIX increased with an increasing mean minimum air temperature and sediment percentage silt and percentage phosphorus. PW declined with the stem density of all species and increased with an increasing percentage silt and when sediment redox potential was >180 mV.
Conclusions and implications
Under optimal conditions, X. granatum grows as fast as most mangrove species and could make an excellent, harvestable addition to the species mix used in restoration projects.
{"title":"Environmental predictors of forest structure, tree growth and wood production for Xylocarpus granatum in mixed-species mangrove forests","authors":"Alistar I. Robertson, Irena Zagorskis, Murray Logan, Paul Dixon, Paul Daniel","doi":"10.1071/mf23246","DOIUrl":"https://doi.org/10.1071/mf23246","url":null,"abstract":"<strong> Context</strong><p>Restored mangrove forests are threatened by the restricted range of species used. <i>Xylocarpus granatum</i> has excellent timber and could add value in mangrove plantings.</p><strong> Methods</strong><p>Forest structure and environmental variables were measured at 40 sites in northern Australia and Papua New Guinea. Tree growth was measured at 18 sites. Boosted regression tree modelling identified environmental predictor variables for above-ground biomass for <i>X. granatum</i> (AGB<sub>X</sub>), mean annual increment in diameter at breast height (DBH) for <i>X. granatum</i> (MAI<sub>X</sub>) and wood production (<i>P</i><sub>W</sub>).</p><strong> Aims</strong><p>To determine the environmental conditions under which <i>X. granatum</i> has the greatest biomass and growth.</p><strong> Key results</strong><p>Increasing stem density, basal area and AGB of other tree species were most important in limiting AGB<sub>X</sub>. MAI<sub>X</sub> (range 0.03–0.55 cm year<sup>−1</sup>) was greatest when sediment redox potential was >100 mV and mean annual catchment rainfall was >4000 mm. MAI<sub>X</sub> increased with an increasing mean minimum air temperature and sediment percentage silt and percentage phosphorus. <i>P</i><sub>W</sub> declined with the stem density of all species and increased with an increasing percentage silt and when sediment redox potential was >180 mV.</p><strong> Conclusions and implications</strong><p>Under optimal conditions, <i>X. granatum</i> grows as fast as most mangrove species and could make an excellent, harvestable addition to the species mix used in restoration projects.</p>","PeriodicalId":18209,"journal":{"name":"Marine and Freshwater Research","volume":"26 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}