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Mitochondrial DNA abundance and circulating metabolomic profiling: Multivariable-adjusted and Mendelian randomization analyses in UK Biobank 线粒体 DNA 丰度和循环代谢组学分析:英国生物库的多变量调整和孟德尔随机分析。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-01-01 Epub Date: 2024-11-24 DOI: 10.1016/j.mito.2024.101991
Jiao Luo , Saskia le Cessie , Ko Willems van Dijk , Sara Hägg , Felix Grassmann , Diana van Heemst , Raymond Noordam

Background

Low leukocyte mitochondrial DNA (mtDNA) abundance has been associated with a higher risk of atherosclerotic cardiovascular disease, but through unclear mechanisms. We aimed to investigate whether low mtDNA abundance is associated with worse metabolomic profiling, as being potential intermediate phenotypes, using cross-sectional and genetic studies.

Methods

Among 61,186 unrelated European participants from UK Biobank, we performed multivariable-adjusted linear regression analyses to examine the associations between mtDNA abundance and 168 NMR-based circulating metabolomic measures and nine metabolomic principal components (PCs) that collectively covered 91.5% of the total variation of individual metabolomic measures. Subsequently, we conducted Mendelian randomization (MR) to approximate the causal effects of mtDNA abundance on the individual metabolomic measures and their metabolomic PCs.

Results

After correction for multiple testing, low mtDNA abundance was associated with 130 metabolomic measures, predominantly lower concentrations of some amino acids and higher concentrations of lipids, lipoproteins and fatty acids; moreover, mtDNA abundance was associated with seven out of the nine metabolomic PCs. Using MR, genetically-predicted low mtDNA abundance was associated with lower lactate (standardized beta and 95% confidence interval: −0.17; −0.26, −0.08), and higher acetate (0.15; 0.07,0.23), and unsaturation degree (0.14; 0.08,0.20). Similarly, genetically-predicted low mtDNA abundance was associated with lower metabolomic PC2 (related to lower concentrations of lipids and fatty acids), and higher metabolomic PC9 (related to lower concentrations of glycolysis-related metabolites).

Conclusion

Low mtDNA abundance is associated with metabolomic perturbations, particularly reflecting a pro-atherogenic metabolomic profile, which potentially could link low mtDNA abundance to higher atherosclerosis risk.
背景:白细胞线粒体DNA(mtDNA)丰度低与动脉粥样硬化性心血管疾病的风险较高有关,但其机制尚不清楚。我们的目的是通过横断面研究和遗传学研究,调查低 mtDNA 丰度是否与代谢组学特征较差有关,并以此作为潜在的中间表型:在英国生物库(UK Biobank)的 61186 名无血缘关系的欧洲参与者中,我们进行了多变量调整线性回归分析,以研究 mtDNA 丰度与 168 种基于核磁共振(NMR)的循环代谢组测量指标和九种代谢组主成分(PC)之间的关联,这些主成分共涵盖了单个代谢组测量指标总变异的 91.5%。随后,我们进行了孟德尔随机化(MR),以近似确定mtDNA丰度对单个代谢组测量值及其代谢组主成分的因果效应:经多重检验校正后,mtDNA丰度低与130个代谢组相关,主要是一些氨基酸浓度较低,脂质、脂蛋白和脂肪酸浓度较高;此外,mtDNA丰度与9个代谢组PC中的7个相关。利用 MR,遗传预测的低 mtDNA 丰度与较低的乳酸(标准化贝塔值和 95% 置信区间:-0.17;-0.26,-0.08)、较高的醋酸(0.15;0.07,0.23)和不饱和度(0.14;0.08,0.20)相关。同样,基因预测的低 mtDNA 丰度与较低的代谢组 PC2(与较低的脂类和脂肪酸浓度有关)和较高的代谢组 PC9(与较低的糖酵解相关代谢物浓度有关)相关:结论:mtDNA丰度低与代谢组紊乱有关,特别是反映了一种促动脉粥样硬化的代谢组特征,这有可能将mtDNA丰度低与动脉粥样硬化风险升高联系起来。
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引用次数: 0
Krebs cycle derivatives, dimethyl fumarate and itaconate, control metabolic reprogramming in inflammatory human microglia cell line 克雷布斯循环衍生物、富马酸二甲酯和伊他康酸能控制炎性人类小胶质细胞系的代谢重编程
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-09-12 DOI: 10.1016/j.mito.2024.101966
Moris Sangineto , Martina Ciarnelli , Archana Moola , Vidyasagar Naik Bukke , Tommaso Cassano , Rosanna Villani , Antonino D. Romano , Giuseppe Di Gioia , Carlo Avolio , Gaetano Serviddio

Metabolic reprogramming drives inflammatory activity in macrophages, including microglia, with Krebs cycle (KC) intermediates playing a crucial role as signaling molecules. Here, we show that the bioenergetic profile of LPS-activated human microglial clone 3 cell line (HMC3) is characterized by high levels of glycolysis and mitochondrial (mt) respiration, and the treatment with KC derivatives, namely dimethyl-fumarate (DMF) and itaconate (ITA), almost restores normal metabolism. However, despite comparable bioenergetic and anti-inflammatory effects, the mt hyper-activity was differentially modulated by DMF and ITA. DMF normalized complex I activity, while ITA dampened both complex I and II hyper-activity counteracting oxidative stress more efficiently.

代谢重编程驱动着包括小胶质细胞在内的巨噬细胞的炎症活动,其中克雷布斯循环(KC)中间产物作为信号分子发挥着至关重要的作用。在这里,我们发现 LPS 激活的人小胶质细胞克隆 3 细胞系(HMC3)的生物能特征是高水平的糖酵解和线粒体(mt)呼吸,而用 KC 衍生物(即富马酸二甲酯(DMF)和伊他康酸(ITA))处理几乎可以恢复正常代谢。然而,尽管生物能和抗炎效果相当,但 DMF 和 ITA 对 mt 的高活性有不同的调节作用。DMF 使复合体 I 的活性恢复正常,而 ITA 则抑制了复合体 I 和 II 的高活性,从而更有效地对抗氧化应激。
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引用次数: 0
The multifaceted effects of mitochondria in kidney diseases 线粒体对肾脏疾病的多方面影响
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-09-11 DOI: 10.1016/j.mito.2024.101957
Jia-Le Xue , Jia-Ling Ji , Yan Zhou , Yao Zhang , Bi-Cheng Liu , Rui-Xia Ma , Zuo-Lin Li

Mitochondria serve as the primary site for aerobic respiration within cells, playing a crucial role in maintaining cellular homeostasis. To maintain homeostasis and meet the diverse demands of the cells, mitochondria have evolved intricate systems of quality control, mainly including mitochondrial dynamics, mitochondrial autophagy (mitophagy) and mitochondrial biogenesis. The kidney, characterized by its high energy requirements, is particularly abundant in mitochondria. Interestingly, the mitochondria display complex behaviors and functions. When the kidney is suffered from obstructive, ischemic, hypoxic, oxidative, or metabolic insults, the dysfunctional mitochondrial derived from the defects in the mitochondrial quality control system contribute to cellular inflammation, cellular senescence, and cell death, posing a threat to the kidney. However, in addition to causing injury to the kidney in several cases, mitochondria also exhibit protective effect on the kidney. In recent years, accumulating evidence indicated that mitochondria play a crucial role in adaptive repair following kidney diseases caused by various etiologies. In this article, we comprehensively reviewed the current understanding about the multifaceted effects of mitochondria on kidney diseases and their therapeutic potential.

线粒体是细胞内进行有氧呼吸的主要场所,在维持细胞平衡方面发挥着至关重要的作用。为了维持平衡和满足细胞的各种需求,线粒体进化出了复杂的质量控制系统,主要包括线粒体动力学、线粒体自噬(丝裂噬)和线粒体生物生成。肾脏的特点是能量需求高,因此线粒体特别丰富。有趣的是,线粒体具有复杂的行为和功能。当肾脏受到阻塞性、缺血性、缺氧性、氧化性或代谢性损伤时,线粒体质量控制系统缺陷导致的线粒体功能障碍会引发细胞炎症、细胞衰老和细胞死亡,从而对肾脏构成威胁。然而,线粒体除了在多种情况下对肾脏造成损伤外,还对肾脏有保护作用。近年来,越来越多的证据表明,线粒体在各种病因引起的肾脏疾病后的适应性修复中发挥着至关重要的作用。本文全面回顾了线粒体对肾脏疾病的多方面影响及其治疗潜力。
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引用次数: 0
Newer mitochondrial dynamics and their role of calcium signalling in liver regeneration 较新的线粒体动力学及其在肝脏再生中的钙信号作用
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-09-19 DOI: 10.1016/j.mito.2024.101969
Onkar Bedi , Vaibhav Sapra , Manish Kumar , Pawan Krishan

Liver regeneration is a crucial process involved in cellular proliferation, differentiation, and tissue repair. Calcium signaling impact key pathways  like hepatocyte growth factor-Met-tyrosine kinase (HGF-Met) transduction pathway, the epidermal growth factor receptor (EGFR) signaling and Ca-mediated nuclear SKHep1 cell proliferation pathway. Intracellular hepatocyte calcium stores are considered as base for the induction of ca-mediated regeneration process. Calcium signaling interplays with HGF, TGF-β, and NF-κB signaling, influence stem cell behavior and triggers MAPK cascade. The mitochondria calcium is impacting on liver rejuvenation by regulating apoptosis and cell division.  In conclusion, it is stated that calcium-signaling holds promise for therapeutic liver interventions.

肝脏再生是细胞增殖、分化和组织修复的关键过程。钙信号对肝细胞生长因子-甲胎蛋白-酪氨酸激酶(HGF-Met)转导途径、表皮生长因子受体(EGFR)信号和钙介导的核 SKHep1 细胞增殖途径等关键途径产生影响。肝细胞内的钙储存被认为是诱导钙介导的再生过程的基础。钙信号与 HGF、TGF-β 和 NF-κB 信号相互作用,影响干细胞行为并触发 MAPK 级联。线粒体钙通过调节细胞凋亡和细胞分裂影响肝脏再生。 总之,钙信号有望用于肝脏干预治疗。
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引用次数: 0
Activation of multifunctional DNA repair APE1/Ref-1 enzyme by the dietary phytochemical Ferulic acid protects human neuroblastoma SH-SY5Y cells against Aβ(25–35)-induced oxidative stress and inflammatory responses 膳食植物化学物质阿魏酸对多功能 DNA 修复 APE1/Ref-1 酶的激活作用可保护人神经母细胞瘤 SH-SY5Y 细胞免受 Aβ(25-35)诱导的氧化应激和炎症反应的影响。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-14 DOI: 10.1016/j.mito.2024.101947
Sharanjot Kaur , Harkomal Verma , Monisha Dhiman , Anil Kumar Mantha

Alzheimer’s disease (AD) is a multifactorial neurodegenerative disorder associated with the amyloid beta (Aβ) and tau hallmarks. The molecular insights into how neuroinflammation is initially triggered and how it affects neuronal cells are yet at the age of infancy. In this study, SH-SY5Y cells were used as a model for neurons by differentiating and were co-cultured with differentiated THP1 cells (microglia model) as well as treated with Aβ(25–35) and with antioxidant FA to study inflammatory, oxidative stress responses and their effects on co-cultured neurons. Neurons co-cultured with microglial cells showed pronounced increase in ROS levels, NOS expression, truncated N-terminal form (34 kDa) of APE1 expression and AIF’s translocation in the nucleus. The pre-treatment of FA, on the other hand reversed these effects. It was further evaluated how FA/Aβ treatment altered microglial phenotype that in turn affected the neurons. Microglial cells showed M1 phenotype upon Aβ(25–35) stress, while FA induced M2 phenotype against Aβ stress, suggesting that FA alleviated Aβ induced phenotype and its associated effects in the co-cultured neurons by altering the phenotype of microglial cells and induced expression of full length (37 kDa) APE1 enzyme and inhibiting AIF’s nuclear translocation, thus inhibiting apoptosis. This is the first study that revealed Aβ induced cleavage of APE1 enzyme in differentiated neurons, suggesting that APE1 may be the potential early target of Aβ that loses its function and exacerbates AD pathology. FA activated a fully functional form of APE1 against Aβ stress. The impaired function of APE1 could be the initial mechanism by which Aβ induces oxidative and inflammatory responses and dietary phytochemical FA can be a potential therapeutic strategy in managing the disease by activating APE1 that not only repairs oxidative DNA base damage but also maintains mitochondrial function and alleviates neuroinflammatory responses.

阿尔茨海默病(AD)是一种多因素神经退行性疾病,与淀粉样蛋白β(Aβ)和tau标志相关。关于神经炎症最初是如何引发的以及它是如何影响神经元细胞的分子研究还处于起步阶段。在这项研究中,SH-SY5Y细胞通过分化被用作神经元模型,并与分化的THP1细胞(小胶质细胞模型)共培养,同时用Aβ(25-35)和抗氧化剂FA处理,以研究炎症、氧化应激反应及其对共培养神经元的影响。与小胶质细胞共培养的神经元显示 ROS 水平、NOS 表达、APE1 的 N 端截短形式(34 kDa)表达和 AIF 在细胞核中的转位明显增加。另一方面,FA 的预处理逆转了这些影响。研究进一步评估了 FA/Aβ 处理如何改变小胶质细胞表型,进而影响神经元。小胶质细胞在Aβ(25-35)应激时表现出M1表型,而FA则诱导M2表型以对抗Aβ应激,这表明FA通过改变小胶质细胞的表型、诱导全长(37 kDa)APE1酶的表达和抑制AIF的核转位从而抑制细胞凋亡,减轻了Aβ诱导的表型及其对共培养神经元的相关影响。这是首次发现Aβ诱导APE1酶在分化神经元中裂解的研究,表明APE1可能是Aβ的潜在早期靶点,APE1会丧失其功能并加剧AD的病理变化。FA激活了APE1的全功能形式,以对抗Aβ应激。APE1功能受损可能是Aβ诱导氧化和炎症反应的初始机制,而膳食植物化学物质FA可激活APE1,不仅能修复氧化性DNA碱基损伤,还能维持线粒体功能并减轻神经炎症反应,从而成为控制疾病的潜在治疗策略。
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引用次数: 0
Relationships of mitochondrial DNA mutations and select clinical diagnoses in perinatally HIV- and ART-exposed uninfected children 围产期感染艾滋病毒和抗逆转录病毒疗法的未感染儿童的线粒体 DNA 变异与特定临床诊断的关系。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-30 DOI: 10.1016/j.mito.2024.101949
Greg S. Gojanovich , Carmen J. Marsit , Deborah Kacanek , Jonathan Russell , Gavin Hudson , Russell B. Van Dyke , Ali B. Naini , Mariana Gerschenson , for the Pediatric HIV/AIDS Cohort Study

The prevalence of pathogenic mutations within mitochondrial (mt) DNA of youth who were perinatally exposed to HIV and ART but remained uninfected (YHEU) were assessed relative to phenotypic clinical indicators of mitochondrial dysfunction (MtD). This was a cross-sectional, nested case-control study. A total of 144 cases met at least one clinical MtD definition and were matched with up to two controls each (n = 287). At least one risk mutation was present in nearly all YHEU (97 %). No differences in mutation frequencies were observed between metabolic or neurodevelopmental cases and respective controls; however, higher frequencies were found in controls versus respective neurologic or growth cases.

本研究评估了围产期暴露于艾滋病毒和抗逆转录病毒疗法但仍未感染的青少年(YHEU)线粒体(mt)DNA中致病突变的发生率与线粒体功能障碍(MtD)表型临床指标的相关性。这是一项横断面巢式病例对照研究。共有 144 个病例符合至少一个临床 MtD 定义,并与最多两个对照组进行了配对(n = 287)。几乎所有的 YHEU(97%)都存在至少一种风险突变。代谢或神经发育病例与各自的对照组之间的突变频率没有差异;但是,对照组与各自的神经或生长病例之间的突变频率较高。
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引用次数: 0
Mitochondrial transfer from mesenchymal stem cells: Mechanisms and functions 间充质干细胞的线粒体转移:机制与功能。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-31 DOI: 10.1016/j.mito.2024.101950
Qing Liu , Xiaoxin Zhang , Tongxin Zhu , Zhonghan Xu , Yingchun Dong , Bin Chen

Mesenchymal stem cells based therapy has been used in clinic for almost 20 years and has shown encouraging effects in treating a wide range of diseases. However, the underlying mechanism is far more complicated than it was previously assumed. Mitochondria transfer is one way that recently found to be employed by mesenchymal stem cells to exert its biological effects. As one way of exchanging mitochondrial components, mitochondria transfer determines both mesenchymal stem cells and recipient cell fates. In this review, we describe the factors that contribute to MSCs-MT. Then, the routes and mechanisms of MSCs-MT are summarized to provide a theoretical basis for MSCs therapy. Besides, the advantages and disadvantages of MSCs-MT in clinical application are analyzed.

间充质干细胞疗法应用于临床已近20年,在治疗多种疾病方面取得了令人鼓舞的效果。然而,其潜在的机制远比之前假设的要复杂得多。线粒体转移是间充质干细胞最近发现的一种发挥生物效应的方式。作为线粒体成分交换的一种方式,线粒体转移决定了间充质干细胞和受体细胞的命运。在这篇综述中,我们将介绍促进间充质干细胞线粒体转移的因素。然后,总结了间充质干细胞-间变性的途径和机制,为间充质干细胞治疗提供理论依据。此外,还分析了间充质干细胞-间充质干细胞在临床应用中的优缺点。
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引用次数: 0
SDHAF2 facilitates mitochondrial respiration through stabilizing succinate dehydrogenase and cytochrome c oxidase assemblies SDHAF2 通过稳定琥珀酸脱氢酶和细胞色素 c 氧化酶的组装来促进线粒体呼吸。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-09-03 DOI: 10.1016/j.mito.2024.101952
Chang-Lin Chen , Takaya Ishihara , Soumyadip Pal , Wei-Ling Huang , Emi Ogasawara , Chuang-Rung Chang , Naotada Ishihara

Succinate dehydrogenase (SDH) plays pivotal roles in maintaining cellular metabolism, modulating regulatory control over both the tricarboxylic acid cycle and oxidative phosphorylation to facilitate energy production within mitochondria. Given that SDH malfunction may serve as a hallmark triggering pseudo-hypoxia signaling and promoting tumorigenesis, elucidating the impact of SDH assembly defects on mitochondrial functions and cellular responses is of paramount importance. In this study, we aim to clarify the role of SDHAF2, one assembly factor of SDH, in mitochondrial respiratory activities. To achieve this, we utilize the CRISPR/Cas9 system to generate SDHAF2 knockout in HeLa cells and examine mitochondrial respiratory functions. Our findings demonstrate a substantial reduction in oxygen consumption rate in SDHAF2 knockout cells, akin to cells with inhibited SDH activity. In addition, in our in-gel activity assays reveal a significant decrease not only in SDH activity but also in cytochrome c oxidase (COX) activity in SDHAF2 knockout cells. The reduced COX activity is attributed to the assembly defect and remains independent of SDH inactivation or SDH complex disassembly. Together, our results indicate a critical role of SDHAF2 in regulating respiration by facilitating the assembly of COX.

琥珀酸脱氢酶(SDH)在维持细胞新陈代谢方面发挥着关键作用,它调节对三羧酸循环和氧化磷酸化的调控,促进线粒体内的能量生产。鉴于 SDH 功能失常可能是触发假缺氧信号和促进肿瘤发生的标志,阐明 SDH 组装缺陷对线粒体功能和细胞反应的影响至关重要。本研究旨在阐明 SDH 的一个组装因子 SDHAF2 在线粒体呼吸活动中的作用。为此,我们利用 CRISPR/Cas9 系统在 HeLa 细胞中敲除 SDHAF2,并检测线粒体呼吸功能。我们的研究结果表明,SDHAF2 基因敲除细胞的耗氧率大大降低,这与 SDH 活性受到抑制的细胞类似。此外,我们的凝胶内活性测定显示,在 SDHAF2 基因敲除细胞中,不仅 SDH 活性显著降低,细胞色素 c 氧化酶(COX)活性也显著降低。COX 活性的降低归因于组装缺陷,与 SDH 失活或 SDH 复合物解体无关。总之,我们的研究结果表明,SDHAF2 通过促进 COX 的组装,在调节呼吸过程中发挥了关键作用。
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引用次数: 0
An integrated multi-omics approach allowed ultra-rapid diagnosis of a deep intronic pathogenic variant in PDHX and precision treatment in a neonate critically ill with lactic acidosis 通过多组学集成方法,超快速诊断出PDHX的深层内含致病变体,并对一名患有乳酸酸中毒的重症新生儿进行了精准治疗。
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-10-15 DOI: 10.1016/j.mito.2024.101973
Rodrigo T. Starosta , Austin A. Larson , Naomi J.L. Meeks , Sara Gracie , Marisa W. Friederich , Sommer M. Gaughan , Peter R. Baker II , Kelly G. Knupp , Cole R. Michel , Richard Reisdorph , Daniella H. Hock , David A. Stroud , Tim Wood , Johan L.K. Van Hove
The diagnosis of mitochondrial disorders is complex. Rapid whole genome sequencing is a first line test for critically ill neonates and infants allowing rapid diagnosis and treatment. Standard genomic technology and bioinformatic pipelines still have an incomplete diagnostic yield requiring complementary approaches. There are currently limited options for rapid additional tests to continue a diagnostic work-up after a negative rapid whole-genome sequencing result, reflecting a gap in clinical practice. Multi-modal integrative diagnostic approaches derived from systems biology including proteomics and transcriptomics show promise in suspected mitochondrial disorders. In this article, we report the case of a neonate who presented with severe lactic acidosis on the second day of life, for whom an initial report of ultra-rapid genome sequencing was negative. The patient was started on dichloroacetate as an emergency investigational new drug (eIND), with a sharp decline in lactic acid levels and clinical stabilization. A proteomics-based approach identified a complete absence of PDHX protein, leading to a re-review of the genome data for the PDHX gene in which a homozygous deep intronic pathogenic variant was identified. Subsequent testing in the following months confirmed the diagnosis with deficient pyruvate dehydrogenase enzyme activity, reduced protein levels of E3-binding protein, and confirmed by mRNA sequencing to lead to the inclusion of a cryptic exon and a premature stop codon. This case highlights the power of rapid proteomics in guiding genomic analysis. It also shows a promising role for dichloroacetate treatment in controlling lactic acidosis related to PDHX-related pyruvate dehydrogenase complex deficiency.
线粒体疾病的诊断非常复杂。快速全基因组测序是重症新生儿和婴儿的一线检测方法,可用于快速诊断和治疗。标准基因组技术和生物信息学管道的诊断结果仍不全面,需要补充方法。目前,在快速全基因组测序结果呈阴性后,继续进行诊断工作的快速附加测试选择有限,这反映了临床实践中的差距。来自系统生物学(包括蛋白质组学和转录组学)的多模式综合诊断方法在疑似线粒体疾病中大有可为。在本文中,我们报告了一例新生儿的病例,该新生儿在出生后第二天出现严重乳酸酸中毒,超快速基因组测序的初步报告为阴性。作为一种紧急研究新药(eIND),患者开始服用二氯乙酸,随后乳酸水平急剧下降,临床症状趋于稳定。基于蛋白质组学的方法确定了 PDHX 蛋白的完全缺失,从而重新审查了 PDHX 基因的基因组数据,并在其中发现了一个同卵深内含子致病变体。随后几个月的检测证实了这一诊断,丙酮酸脱氢酶酶活性不足,E3结合蛋白水平降低,mRNA测序证实其中包含一个隐性外显子和一个过早终止密码子。该病例凸显了快速蛋白质组学在指导基因组分析方面的作用。它还显示了二氯乙酸治疗在控制与 PDHX 相关的丙酮酸脱氢酶复合物缺乏症有关的乳酸酸中毒方面的作用。
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引用次数: 0
Mitochondrial genome-derived circRNAs: Orphan epigenetic regulators in molecular biology 线粒体基因组衍生的 circRNA:分子生物学中的 "孤儿 "表观遗传调节因子
IF 3.9 3区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-09-23 DOI: 10.1016/j.mito.2024.101968
Nima Sanadgol , Javad Amini , Roghayeh Khalseh , Mostafa Bakhshi , Arezoo Nikbin , Cordian Beyer , Adib Zendehdel
Mitochondria are vital for cellular activities, influencing ATP production, Ca2+ signaling, and reactive oxygen species generation. It has been proposed that nuclear genome-derived circular RNAs (circRNAs) play a role in biological processes. For the first time, this study aims to comprehensively explore experimentally confirmed human mitochondrial genome-derived circRNAs (mt-circRNAs) via in-silico analysis. We utilized wide-ranging bioinformatics tools to anticipate their roles in molecular biology, involving miRNA sponging, protein antagonism, and peptide translation. Among five well-characterized mt-circRNAs, SCAR/mc-COX2 stands out as particularly significant with the potential to sponge around 41 different miRNAs, which target several genes mostly involved in endocytosis, MAP kinase, and PI3K-Akt pathways. Interestingly, circMNTND5 and mecciND1 specifically interact with miRNAs through their unique back-splice junction sequence. These exclusively targeted miRNAs (has-miR-5186, 6888-5p, 8081, 924, 672-5p) are predominantly associated with insulin secretion, proteoglycans in cancer, and MAPK signaling pathways. Moreover, all mt-circRNAs intricately affect the P53 pathway through miRNA sequestration. Remarkably, mc-COX2 and circMNTND5 appear to be involved in the RNA’s biogenesis by antagonizing AGO1/2, EIF4A3, and DGCR8. All mt-circRNAs engaged with IGF2BP proteins crucial in redox signaling, and except mecciND1, they all potentially generate at least one protein resembling the immunoglobulin heavy chain protein. Given P53′s function as a redox-sensitive transcription factor, and insulin’s role as a crucial regulator of energy metabolism, their indirect interplay with mt-circRNAs could influence cellular outcomes. However, due to limited attention and infrequent data availability, it is advisable to conduct more thorough investigations to gain a deeper understanding of the functions of mt-circRNA.
线粒体对细胞活动至关重要,影响着 ATP 生成、Ca2+ 信号传导和活性氧生成。有人提出,核基因组衍生的环状 RNA(circRNA)在生物过程中发挥作用。本研究首次旨在通过内嵌分析,全面探索经实验证实的人类线粒体基因组衍生的环状核糖核酸(mt-circRNAs)。我们利用广泛的生物信息学工具来预测它们在分子生物学中的作用,包括 miRNA 海绵作用、蛋白质拮抗作用和肽翻译作用。在五种表征明确的mt-circRNA中,SCAR/mc-COX2尤为突出,它具有海绵状作用的潜力,可吸附约41种不同的miRNA,这些miRNA主要靶向参与内吞、MAP激酶和PI3K-Akt通路的多个基因。有趣的是,circMNTND5 和 mecciND1 通过其独特的后接合序列与 miRNA 发生特异性相互作用。这些专门靶向的 miRNA(has-miR-5186、6888-5p、8081、924、672-5p)主要与胰岛素分泌、癌症中的蛋白多糖和 MAPK 信号通路有关。此外,所有 mt-circRNA 都会通过 miRNA 封存作用对 P53 通路产生错综复杂的影响。值得注意的是,mc-COX2 和 circMNTND5 似乎通过拮抗 AGO1/2、EIF4A3 和 DGCR8 参与了 RNA 的生物发生。所有 mt-circRNA 都与氧化还原信号转导中至关重要的 IGF2BP 蛋白相互作用,除 mecciND1 外,它们都可能生成至少一种类似免疫球蛋白重链蛋白的蛋白质。鉴于 P53 具有氧化还原敏感转录因子的功能,而胰岛素是能量代谢的关键调节因子,它们与 mt-circRNA 的间接相互作用可能会影响细胞的结果。然而,由于关注度有限和数据不经常获得,最好进行更深入的研究,以更深入地了解 mt-circRNA 的功能。
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引用次数: 0
期刊
Mitochondrion
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