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Generation of large mitochondrial and nuclear nucleotide sequences and phylogenetic analyses using high-throughput short-read datasets for endangered Placostylinae snails of the southwest Pacific 使用高通量短读数据集生成西南太平洋濒危扁螺的大线粒体和核苷酸序列以及系统发育分析
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1957552
M. Quenu, S. Trewick, Elizabeth E. Daly, M. Morgan‐Richards
ABSTRACT Placostylinae are a sub-family of terrestrial land snails endemic to the southwest Pacific. Some species are harvested for food, and others are critically endangered. Here we assemble and characterise complete mitochondrial genomes, as well as three nuclear markers (partial 45S ribosomal cassettes and the histone genes H3 and H4) of five snail species from three geographical regions (New Zealand, New Caledonia and the Solomon Islands). Mitogenomes of Placostylinae snails ranged between 14,544 bp and 14,711 bp, with minor variation in the position of tRNA tyrosine (Y) and tRNA tryptophane (W). The 45S ribosomal cassette contained intra-genomic nucleotide variation in ITS2. Cassettes containing histone genes H3 and H4 and their non-transcribed spacer region were assembled for three species, with the two genes coded in the same direction. Phylogenetic analysis on this large dataset (mitochondrial genome + nuclear markers) supported geographical clustering of species but could not confidently infer monophyly of the four Placostylus species with respect to Eumecostylus cleryi. Analysis based on shorter cytochrome c oxidase sequences with a wider taxon sampling found species representing the genera Eumecostylus and Placocharis were nested within the phylogenetic diversity of Placostylus. Multi-locus phylogenetic analysis containing mitochondrial and nuclear sequences did not support monophyly of Placostylinae.
平原蜗牛科是西南太平洋特有的陆生蜗牛亚科。一些物种被收割作为食物,而另一些则处于极度濒危状态。在这里,我们收集并表征了来自三个地理区域(新西兰、新喀里多尼亚和所罗门群岛)的五种蜗牛的完整线粒体基因组,以及三个核标记(部分45S核糖体盒和组蛋白基因H3和H4)。蜗牛的线粒体基因组分布在14544个之间 bp和14711 在tRNA酪氨酸(Y)和tRNA色氨酸(W)的位置上有微小变化。45S核糖体盒包含ITS2的基因组内核苷酸变异。为三个物种组装了含有组蛋白基因H3和H4及其非转录间隔区的盒,这两个基因的编码方向相同。这个大型数据集的系统发育分析(线粒体基因组 + 核标记)支持物种的地理聚类,但不能可靠地推断出四个Placostylus物种相对于Eumecostyluscleryi的单系性。基于较短的细胞色素c氧化酶序列和较宽的分类单元采样进行的分析发现,代表Eumecostylus属和Placocharis属的物种嵌套在Placostyrus的系统发育多样性中。包含线粒体和核序列的多基因座系统发育分析不支持单系性。
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引用次数: 2
The abundance, distribution and diversity of invasive and indigenous freshwater snails in a section of the Ogunpa River, southwest Nigeria 尼日利亚西南部奥贡帕河一段入侵和本地淡水蜗牛的丰度、分布和多样性
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1946905
Musa K. Oladejo, O. O. Oloyede, T. Adesakin, O. Morenikeji
ABSTRACT This study investigated the abundance, distribution and diversity of freshwater snails at four sites in the Ogunpa River, Nigeria from May 2018 to December 2018. A total of 2067 freshwater snails was collected, belonging to two sub-classes, four families, and seven species: Physella acuta, Amerianna carinata, Melanoides tuberculata, Physa waterloti, Bulinus globosus, Bulinus senegalensis, and Lymnaea natalensis. Invasive freshwater snails (82.15%) were more abundant than indigenous species (17.85%). Physella acuta (30.05%) and P. waterloti (20.61%) were the most abundant species, while B. globosus (4.35%) and B. senegalensis (3.92%) were the least abundant. The presence of P. acuta, B. globosus, B. senegalensis, and M. tuberculata constitute potential economic and health risks to animals and humans in contact with this waterbody. Freshwater snail numbers showed variation among sites, seasons, and site-season interactions. Water depth, turbidity, and pH correlated significantly with the numbers of freshwater snails, except that pH did not correlate with P. waterloti. There were strong positive correlations between the numbers of molluscs and the abundance of Commelina diffusa, Amaranthus spinosus, Murdannia nudiflora, and Ipomoea aquatica. Stepwise multiple regression showed that water depth, C. diffusa, and Sacciolepis africana were the primary variables affecting snail distribution and abundance in the Ogunpa River.
摘要本研究于2018年5月至2018年12月在尼日利亚奥贡帕河的四个地点调查了淡水蜗牛的丰度、分布和多样性。共收集到2067只淡水蜗牛,分为两个亚纲、四个科和七个物种:尖腹蜗牛、隆胸蜗牛、结节黑蜗牛、水蜗牛、球蜗牛、塞内加尔蜗牛和纳氏Lymnaea natalensis。入侵淡水蜗牛(82.15%)比本土物种(17.85%)更为丰富,其中尖绒蜗牛(30.05%)和水蜗牛(20.61%)最为丰富,球蜗牛(4.35%)和塞内加尔蜗牛(3.92%)最少。尖尖假单胞菌、球形芽孢杆菌、塞内加尔芽孢杆菌和结核分枝杆菌的存在对接触该水体的动物和人类构成潜在的经济和健康风险。淡水蜗牛的数量显示出不同地点、季节和地点-季节相互作用的变化。水深、浊度和pH值与淡水蜗牛的数量显著相关,但pH值与水蜗牛的数量无关。软体动物的数量与鸭舌草、刺苋、裸花和水藻的丰度呈正相关。逐步多元回归分析表明,水深、C.diffusa和Sacciolepis africana是影响奥贡帕河蜗牛分布和丰度的主要变量。
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引用次数: 5
Mass mortality of the black sea hare Aplysia gigantea (Gastropoda: Aplysiidae) at Augusta, Western Australia in the austral summer of 2021 2021年南夏季,西澳大利亚奥古斯塔黑海兔大海兔(腹足目:海兔科)的大规模死亡
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1962594
F. Wells, J. Browne, R. Loh, M. Massam, John McKinney
ABSTRACT A mass mortality of the sea hare Aplysia gigantea at Augusta, Western Australia was first reported to local authorities on 10 February 2021. The number of dead sea hares on the beach increased rapidly, until thousands were to be seen on a 4 km stretch; the maximum density of dead individuals was estimated at 20–30/m2. We suggest the mortality was caused by weather conditions that washed the animals ashore, where they died. Weather conditions changed on 17 March and the dead sea hares were washed back out to sea.
摘要:2021年2月10日,西澳大利亚州奥古斯塔市首次向地方当局报告了海兔海兔的大规模死亡。海滩上死海兔的数量迅速增加,直到在4 km延伸;死亡个体的最大密度估计为20-30个/m2。我们认为,死亡是由将动物冲上岸的天气条件造成的,它们在那里死亡。3月17日,天气状况发生变化,死海兔被冲回大海。
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引用次数: 1
A new species of Umbilia Jousseaume, 1884 (Mollusca: Cypraeidae) from the Australian Pliocene 澳大利亚上新世朱塞翁属一新种,1884年(软体动物纲:Cypraeidae)
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1962588
P. Southgate, T. Militz, M. Roberts
ABSTRACT A new morphologically distinct species of cowry (family Cypraeidae Rafinesque, 1815) is described from the Pliocene of Flinders Island, Tasmania. Diagnostic features of Umbilia furneauxensis n. sp. include relatively small size (<60 mm), extension of apertural dentition to at least midway on the ventrum and labrum, and heavily callused margins with numerous shallow depressions forming a dimpled surface that may extend on to the base. It is the third Umbilia species to be recognised from the Australian Pliocene. ZooBank registration: http://zoobank.org/urn:lsid:zoobank.org:pub:4B6291F2-DA31-4A00-A223-268A83F480AE
摘要:本文报道了塔斯马尼亚州弗林德斯岛上新世一种形态独特的菊科(Cypraeidae Rafinesque, 1815)。furneauxensis n. spp .的诊断特征包括相对较小的尺寸(<60毫米),孔齿延伸到至少腹膜和唇部的中间,边缘有大量的老茧,有许多浅凹陷形成一个凹陷的表面,可能延伸到基部。这是第三个被确认来自澳大利亚上新世的脐带物种。ZooBank注册:http://zoobank.org/urn:lsid:zoobank.org:pub:4B6291F2-DA31-4A00-A223-268A83F480AE
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引用次数: 3
A new species of land snail from the genus Diplommatina Benson, 1849 (Gastropoda, Caenogastropoda, Diplommatinidae) from Sikkim Himalaya, North East India 印度东北部锡金-喜马拉雅半岛Diplommatina Benson属陆蜗牛一新种,1849(腹足目,软体动物目,Diplommatinidae)
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1970352
Nipu Kumar Das, N. A. Aravind
ABSTRACT A new species of Diplommatina Benson, 1849 from Sikkim, Northeast India is described based on shell morphology. This new species is found to be distinct in its externally visible large parietal tooth, and in the absence of a columellar tooth on the shell aperture. A detailed comparison with the closest congeners of the new species is provided. Diplommatina bidentata Vermeulen, Liew & Schilthuizen, 2015 from Malaysia is the only morphologically similar species with a tooth on the parietal lip, but it differs from the new species in having a tooth on the columellar lip as well as other shell characters. A checklist is also given for all the described Diplommatina species from North East India, as well as those from Darjeeling, West Bengal. http://www.zoobank.org/lsid:zoobank.org:act:0C252457-39A9-4451-AA24-8CA37F0A6271
摘要根据壳的形态描述了印度东北部锡金的一新种Diplommatina Benson,1849。这一新物种被发现在其外部可见的大顶齿和壳孔上没有小柱齿的情况下是不同的。提供了与新物种最接近的同源物的详细比较。来自马来西亚的Diplommatina bidentata Vermeulen,Liew&Schilthuizen,2015是唯一一个在顶唇上有牙齿的形态相似物种,但它与新物种的不同之处在于在柱唇上有一颗牙齿以及其他外壳特征。此外,还列出了来自印度东北部以及西孟加拉邦大吉岭的所有描述的Diplommatina物种的清单。http://www.zoobank.org/lsid:zoobank.org:act:0C252457-39A9-4451-AA24-8CA37F0A6271
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引用次数: 2
Predation on the egg of Coelostoma stultum (Coleoptera: Hydrophilidae) by the alien species Deroceras laeve (Mollusca: Gastropoda: Agriolimacidae) 外来物种Deroceras laeve(软体动物:腹足目:Agriolimachidae
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1946895
Ryosuke Matsushima, T. Haga
ABSTRACT Slugs are polyphagous herbivores that damage various crops. The genus Deroceras is primarily herbivorous; however, certain species are known to feed on various types of organic matter. In this study, we documented field observations of predation by Deroceras on eggs of the water scavenger beetle Coelostoma stultum at the waterside of paddy fields in central Japan and identified the predator species by DNA barcoding. Molecular phylogenetic analyses revealed that the slugs found sympatrically with C. stultum are Deroceras laeve, whose two haplotypes are widely distributed throughout the Palearctic and eastern margin of Asia. In two of three observed predation events, D. laeve thrust its head into the egg cocoon and preyed on eggs while C. stultum females were spinning. In the other event, no females spinning egg cocoons were observed. Due to the relatively large body size of the slug, it may push the female beetle away and prey on eggs. Considering the native distribution range of these two species, invasion of D. laeve has resulted in a new combination of predator–prey relationships in Japan between D. laeve and native C. stultum. It is a matter of concern that slugs may establish predatory pressures that threaten C. stultum.
蛞蝓是一种多食性食草动物,会破坏各种作物。Deroceras属主要是草食性的;然而,已知某些物种以各种类型的有机物为食。在这项研究中,我们记录了在日本中部稻田水边,Deroceras捕食食水甲虫Coelostoma stultum卵的实地观察结果,并通过DNA条形码识别了捕食者物种。分子系统发育分析表明,与C.stultum共病发现的蛞蝓是Deroceras laeve,其两个单倍型广泛分布在整个北北极和亚洲东部边缘。在三次观察到的捕食事件中,有两次是D.laeve把头伸进卵茧中捕食,而C.stultum雌性则在旋转。在另一个事件中,没有观察到雌性旋转蚕茧。由于蛞蝓的体型相对较大,它可能会将雌性甲虫推开并捕食卵。考虑到这两个物种的本地分布范围,D.laeve的入侵在日本导致了D.laeve和本地C.stultum之间捕食者-猎物关系的新组合。令人担忧的是,蛞蝓可能会形成掠夺性压力,威胁到C.stultum。
{"title":"Predation on the egg of Coelostoma stultum (Coleoptera: Hydrophilidae) by the alien species Deroceras laeve (Mollusca: Gastropoda: Agriolimacidae)","authors":"Ryosuke Matsushima, T. Haga","doi":"10.1080/13235818.2021.1946895","DOIUrl":"https://doi.org/10.1080/13235818.2021.1946895","url":null,"abstract":"ABSTRACT Slugs are polyphagous herbivores that damage various crops. The genus Deroceras is primarily herbivorous; however, certain species are known to feed on various types of organic matter. In this study, we documented field observations of predation by Deroceras on eggs of the water scavenger beetle Coelostoma stultum at the waterside of paddy fields in central Japan and identified the predator species by DNA barcoding. Molecular phylogenetic analyses revealed that the slugs found sympatrically with C. stultum are Deroceras laeve, whose two haplotypes are widely distributed throughout the Palearctic and eastern margin of Asia. In two of three observed predation events, D. laeve thrust its head into the egg cocoon and preyed on eggs while C. stultum females were spinning. In the other event, no females spinning egg cocoons were observed. Due to the relatively large body size of the slug, it may push the female beetle away and prey on eggs. Considering the native distribution range of these two species, invasion of D. laeve has resulted in a new combination of predator–prey relationships in Japan between D. laeve and native C. stultum. It is a matter of concern that slugs may establish predatory pressures that threaten C. stultum.","PeriodicalId":18857,"journal":{"name":"Molluscan Research","volume":"41 1","pages":"254 - 261"},"PeriodicalIF":1.0,"publicationDate":"2021-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/13235818.2021.1946895","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48621050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Phylogeography of the intertidal marine bivalve Lasaea hinemoa (Mollusca: Bivalvia) in New Zealand 新西兰潮间带海生双壳动物的系统地理学
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-07-03 DOI: 10.1080/13235818.2021.1966163
Katherine Lockton, H. Spencer
ABSTRACT Genetic investigations of members of the bivalve genus Lasaea have revealed unexpected diversity in the genus, as well as close affiliations between geographically distant populations. Here we investigate the phylogeography of the New Zealand species L. hinemoa using mitochondrial and nuclear gene sequences (cytochrome c oxidase subunit III and Internal Transcribed Spacer 2, respectively) from populations around the country. Additionally, we designed novel microsatellite markers, which enabled us to check the specific species status implied by the two single-gene markers. Lasaea hinemoa individuals fell into four clades. Clades I and III were numerically dominant, with a suggestion of some biogeographic structure around the coasts of mainland New Zealand, and we argue they represent separate cryptic species. Samples from the subantarctic Antipodes Island contained individuals from two clades (I and II). The latter clade is close to populations from the Kerguelen Islands, which suggests possible transoceanic dispersal via the Antarctic Circumpolar Current. Clade IV, represented by small numbers of individuals from Picton and Mahia, appears to be the result of transoceanic dispersal by yet another Lasaea species.
对双壳属Lasaea成员的遗传调查揭示了该属意想不到的多样性,以及地理上遥远的种群之间的密切联系。本文利用线粒体和细胞核基因序列(分别为细胞色素c氧化酶亚基III和内部转录间隔器2)对新西兰L. hinemoa进行了系统地理学研究。此外,我们还设计了新的微卫星标记,使我们能够检查两个单基因标记所暗示的特定物种状态。犀草属个体可分为4个支系。进化支I和进化支III在数量上占主导地位,这表明在新西兰大陆海岸周围存在一些生物地理结构,我们认为它们代表了不同的隐种。亚南极对跖岛的样本包含两个分支(I和II)的个体。后一个分支接近Kerguelen群岛的种群,这表明可能通过南极环极流越洋扩散。以皮克顿和马希亚的少量个体为代表的进化枝IV,似乎是另一个Lasaea物种越洋扩散的结果。
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引用次数: 0
Caribbochiton guadeloupensis n. gen et n. sp. (Mollusca: Polyplacophora) from the Caribbean Sea 加勒比海的瓜德罗氏加勒比石虫(软体动物:多placophora)
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-06-27 DOI: 10.1080/13235818.2021.1941726
B. Sirenko, B. Anseeuw
ABSTRACT A new genus and new species of the family Callistoplacidae from the bathyal zone near Guadeloupe Island in the Caribbean Sea are described. Caribbochiton guadeloupensis n. gen. et n. sp. is unlike other genera in the family Callistoplacidae: it has no ribs on end valves or on lateral areas of intermediate valves. According to other morphological features (thick shell, relatively narrow valves, noticeably raised lateral areas, similar slit formula, insertion plate teeth thickened at edges of slits, dorsal scales), this genus is closest to the family Callistoplacidae. Given that a number of species of the family do not have at a young age the ribs which appear later, we hypothesise that the new genus could have evolved as a result of paedomorphosis. An emended diagnosis of the family Callistoplacidae is hereby proposed. ZooBank registration: LSIDurn:lsid:zoobank.org:pub:BB94DD8F-C466-4B1B-8868-EEAB75E6930B Carribochiton LSIDurn:lsid:zoobank.org:act:EBD4411B-C39D-446C-AD24-EB5F3A27AB32 Carribochiton guadeloupensis LSIDurn:lsid:zoobank.org:act:19B8AF77-2AB8-4BD1-940A-CA4EAFFCF215
摘要本文报道了加勒比海瓜德罗普岛深水区Callistoplacidae科一新属和新种。guadeloupensis n. gen. et n. sp.加勒比石壳(Caribbochiton guadeloupensis n. gen. et n. sp.)不同于扇壳科(Callistoplacidae)的其他属:它在端瓣或中间瓣的侧面没有肋。根据其他形态特征(厚壳,相对狭窄的瓣,明显凸起的侧面,类似的狭缝,狭缝边缘加厚的插入板齿,背部鳞片),该属与Callistoplacidae最接近。考虑到这个科的许多物种在年轻时没有后来出现的肋骨,我们假设这个新属可能是幼体发育的结果。现提出一种修正的Callistoplacidae科的诊断。ZooBank注册:LSIDurn:lsid:zoobank.org:pub:BB94DD8F-C466-4B1B-8868-EEAB75E6930B Carribochiton LSIDurn:lsid:zoobank.org:act:EBD4411B-C39D-446C-AD24-EB5F3A27AB32 Carribochiton guadeloupensis LSIDurn:lsid:zoobank.org:act:19B8AF77-2AB8-4BD1-940A-CA4EAFFCF215
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引用次数: 0
Extremely short embryonic period of the intertidal pulmonate limpet Siphonaria sirius (Pilsbry, 1895) 潮间带肺帽贝的极短胚胎期(Pilsbry,1895)
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-06-27 DOI: 10.1080/13235818.2021.1943601
Yoko Wada, Y. Yusa
ABSTRACT Siphonariidae is a panpulmonate family that occurs in intertidal rocky shores worldwide within temperate to tropical areas. Although the egg masses of Siphonaria sirius are commonly found in lower intertidal rocky shores in summer, there is a lack of information on their embryonic development. We examined the embryonic development and duration of S. sirius both in the laboratory and in the field. The study was conducted in Shirahama, Wakayama, Japan, during the summer of 2014 and 2015. The embryonic developmental process of S. sirius was similar to that of other planktotrophic siphonariids. However, S. sirius hatched within four days after oviposition at 27.35°C in the laboratory, which is the shortest in the Siphonariidae. In the field, hatching occurred notably faster at 1.6 days after oviposition, although the average temperature (27.42°C) was similar to that in the laboratory. The presence of egg predators, as well as other environmental factors, may be responsible for the short embryonic period of this species, especially in the field.
吸蚊科是一个泛肺科,分布在温带至热带地区的潮间带岩岸边。虽然小天狼星的卵群通常在夏季的潮间带岩石海岸发现,但关于它们胚胎发育的资料却很少。我们在实验室和田间对小天狼星的胚胎发育和持续时间进行了研究。该研究于2014年和2015年夏季在日本和歌山市白滨市进行。小天狼星的胚胎发育过程与其他浮游营养性虹膜纲动物相似。然而,在27.35℃的实验室条件下,小天狼星在产卵后4天内就孵化了,这是吸蚊科中最短的。在野外,尽管平均温度(27.42°C)与实验室相似,但产卵后1.6 d的孵化速度明显加快。卵捕食者的存在以及其他环境因素可能是造成该物种胚胎期短的原因,特别是在野外。
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引用次数: 0
A new species of Pila (Gastropoda: Ampullariidae) from Mizoram, India 标题印度米佐拉姆邦琵拉鱼属一新种(腹足纲:壶腹鱼科)
IF 1 4区 生物学 Q3 ZOOLOGY Pub Date : 2021-06-20 DOI: 10.1080/13235818.2021.1941575
Maitreya Sil, Reshma Basak, K. Karanth, N. A. Aravind
ABSTRACT Family Ampullariidae consists of 11 genera of freshwater snails distributed pan-tropically in the Old and the New World. One of the ampullarid genera, Pila, is distributed in Africa and Asia and consists of 28 species. Here we describe the sixth member of the genus Pila from India. Pila mizoramensis n. sp. was collected from the Northeast Indian state of Mizoram. We adopted an integrative taxonomic approach to describe this species. First, a multilocus phylogeny of the genus was built to determine its placement in the tree. Then we used pairwise distance in the cytochrome oxidase I gene to compare its divergence from its congeners. Finally morphometric data was used to show that this hill stream species of Pila does not overlap with other hill stream species in morphometric space. The morphology of the species is also discussed in detail. With the advent of molecular tools in taxonomy a plethora of new species have been described from India in the last few decades. We add this newest member of genus Pila to the growing list.ZooBank registration: http://www.zoobank.org/urn:urn:lsid:zoobank.org:pub:0ED40557-4595-49E5-99A6-8A684C5D6AB3
壶形蜗牛科由11属淡水蜗牛组成,分布于东半球和新大陆的泛热带地区。壶腹属之一的Pila分布在非洲和亚洲,由28种组成。在这里,我们描述了来自印度的皮拉属的第六个成员。米佐拉姆皮拉虫(Pila mizoramensis n.sp)采自印度东北部的米佐拉姆邦。我们采用综合分类学方法来描述该物种。首先,建立了该属的多位点系统发育,以确定其在树中的位置。然后,我们使用细胞色素氧化酶I基因的两两距离来比较其与同源基因的差异。最后,利用形态计量数据表明,该山溪物种在形态计量空间上与其他山溪物种不重叠。还详细讨论了该物种的形态。在过去的几十年里,随着分子分类工具的出现,大量的新物种在印度被描述出来。我们把皮拉属的这个最新成员添加到生长列表中。ZooBank注册:http://www.zoobank.org/urn:urn:lsid:zoobank.org:pub:0ED40557-4595-49E5-99A6-8A684C5D6AB3
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引用次数: 2
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Molluscan Research
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