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Comparative Multi-Omics Survey Reveals Novel Specialized Metabolites and Biosynthetic Gene Clusters Under GacS Control in Pseudomonas donghuensis Strain SVBP6 多重组学比较调查揭示了东湖假单胞菌 SVBP6 菌株中受 GacS 控制的新型特化代谢物和生物合成基因簇
IF 3.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-15 DOI: 10.1111/mmi.15329
Federico Matías Muzio, Corri D. Hamilton, Paolo Stincone, Betina Agaras, Cara H. Haney, Daniel Petras, Claudio Valverde
In Pseudomonas donghuensis SVBP6, isolated from an agricultural field, the well-conserved Gac-Rsm pathway upregulates biosynthesis of the antifungal compound 7-hydroxytropolone (7-HT). However, 7-HT does not fully explain the strain's Gac-Rsm-dependent antimicrobial activity. Here, we combined comparative transcriptomic, proteomic, and metabolomic approaches to identify novel GacS-dependent biosynthetic gene clusters (BGC) and/or extracellular specialized metabolites. Our data revealed a broad impact of GacS on gene expression and extracellular metabolite profile of SVBP6. At both the mRNA and polypeptide levels, specialized metabolism was the main affected functional category in the gacS mutant. The major extracellular MS/MS spectral families promoted by GacS were fatty acid amides, fatty acids, and alkaloids. GacS was required for the production of the antimicrobial compound pseudoiodinine and to activate expression of the corresponding BGC. We also detected GacS-dependent production of 2,3,4-trihydro-β-carboline-1-one, which may add to the antimicrobial arsenal of SVBP6. Furthermore, transcriptomics and proteomics pinpointed several GacS-activated BGCs that had escaped in silico genome mining tools. Altogether, comparative multi-omics analyses of gacS loss-of-function mutants in Pseudomonas isolates are a promising strategy to uncover bioactive metabolites and/or their BGCs. Discovery of novel natural products is important for harnessing the potential of microbiota to improve crop plant growth and health.
在从农田中分离出来的东湖假单胞菌 SVBP6 中,保存完好的 Gac-Rsm 通路上调了抗真菌化合物 7-hydroxytropolone (7-HT) 的生物合成。然而,7-HT 并不能完全解释该菌株依赖 Gac-Rsm 的抗菌活性。在这里,我们结合了比较转录组学、蛋白质组学和代谢组学方法,以确定新的依赖于 GacS 的生物合成基因簇(BGC)和/或细胞外特殊代谢物。我们的数据揭示了 GacS 对 SVBP6 基因表达和细胞外代谢物特征的广泛影响。在 mRNA 和多肽水平上,特化代谢是 gacS 突变体受影响的主要功能类别。GacS促进的主要细胞外MS/MS谱系是脂肪酸酰胺、脂肪酸和生物碱。GacS 是生产抗菌化合物伪碘氨酸和激活相应 BGC 表达所必需的。我们还检测到依赖 GacS 产生的 2,3,4-三氢-β-咔啉-1-酮,这可能会增加 SVBP6 的抗菌能力。此外,转录组学和蛋白质组学还发现了几种 GacS 激活的 BGCs,这些 BGCs 逃过了硅学基因组挖掘工具的检测。总之,对假单胞菌分离物中的 gacS 功能缺失突变体进行多组学比较分析是发现生物活性代谢物和/或其 BGCs 的一种有前途的策略。发现新型天然产品对于利用微生物群的潜力改善作物生长和健康非常重要。
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引用次数: 0
Bacterial Organelles in Iron Physiology 铁生理学中的细菌细胞器
IF 3.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-15 DOI: 10.1111/mmi.15330
Kristina M. Ferrara, Kuldeepkumar R. Gupta, Hualiang Pi
Bacteria were once thought to be simple organisms, lacking the membrane-bound organelles found in eukaryotic cells. However, recent advancements in microscopy have changed this view, revealing a diverse array of organelles within bacterial cells. These organelles, surrounded by lipid bilayers, protein-lipid monolayers, or proteinaceous shells, play crucial roles in facilitating biochemical reactions and protecting cells from harmful byproducts. Unlike eukaryotic organelles, which are universally present, bacterial organelles are species-specific and induced only under certain conditions. This review focuses on the bacterial organelles that contain iron, an essential micronutrient for all life forms but potentially toxic when present in excess. To date, three types of iron-related bacterial organelles have been identified: two membrane-bound organelles, magnetosomes and ferrosomes, and one protein-enclosed organelle, the encapsulated ferritin-like proteins. This article provides an updated overview of the genetics, biogenesis, and physiological functions of these organelles. Furthermore, we discuss how bacteria utilize these specialized structures to adapt, grow, and survive under various environmental conditions.
细菌曾被认为是一种简单的生物,缺乏真核细胞中的膜结合细胞器。然而,最近显微镜技术的进步改变了这一看法,揭示了细菌细胞内多种多样的细胞器。这些细胞器被脂质双分子层、蛋白质-脂质单分子层或蛋白质外壳包围,在促进生化反应和保护细胞免受有害副产物伤害方面发挥着至关重要的作用。与普遍存在的真核生物细胞器不同,细菌细胞器具有物种特异性,只有在特定条件下才会诱发。铁是所有生命形式所必需的微量营养元素,但过量存在时可能会产生毒性。迄今为止,已发现三种与铁有关的细菌细胞器:两种膜结合细胞器--磁小体和铁小体,以及一种蛋白质包裹细胞器--包裹铁蛋白样蛋白。本文概述了这些细胞器的遗传学、生物发生和生理功能。此外,我们还讨论了细菌如何利用这些特殊结构在各种环境条件下适应、生长和生存。
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引用次数: 0
Converging Roles of the Metal Transporter SMF11 and the Ferric Reductase FRE1 in Iron Homeostasis of Candida albicans 金属转运体 SMF11 和铁还原酶 FRE1 在白色念珠菌铁平衡中的共同作用
IF 3.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 DOI: 10.1111/mmi.15326
Naisargi K. Patel, Marika S. David, Shuyi Yang, Ritu Garg, Hongyu Zhao, Brendan P. Cormack, Valeria C. Culotta
Pathogenic fungi must appropriately sense the host availability of essential metals such as Fe. In Candida albicans and other yeasts, sensing of Fe involves mitochondrial Fe-S clusters. Yeast mutants for Fe-S cluster assembly sense Fe limitation even when Fe is abundant and hyperaccumulate Fe. We observe this same disrupted Fe sensing with C. albicans mutants of SMF11, a NRAMP transporter of divalent metals. Mutants of smf11 hyperaccumulate both Mn and Fe and the elevated Mn is secondary to Fe overload. As with Fe-S biogenesis mutants, smf11∆/∆ mutants show upregulation of ferric reductases that are normally repressed under high Fe, and Fe import is activated. However, unlike Fe-S biogenesis mutants, smf11∆/∆ mutants show no defects in mitochondrial Fe-S enzymes. Intriguingly, this exact condition of disrupted Fe sensing without inhibiting Fe-S clusters occurs with C. albicans fre1∆/∆ mutants encoding a ferric reductase. Mutants of fre1 and smf11 display similar perturbations in the cell wall, in filamentation and in the ROS burst of morphogenesis, a Fe-dependent process. As with FRE1, SMF11 is important for virulence in a mouse model for disseminated candidiasis. We propose a model in which FRE1 and SMF11 operate outside the mitochondrial Fe-S pathway to donate ferrous Fe for Fe sensing.
致病真菌必须适当地感知宿主体内是否存在铁等必需金属。在白色念珠菌和其他酵母菌中,对 Fe 的感知涉及线粒体中的 Fe-S 簇。酵母的 Fe-S 簇组装突变体即使在铁元素丰富的情况下也能感知到铁元素的限制,并过度积累铁元素。我们在白僵菌 SMF11(一种二价金属的 NRAMP 转运体)的突变体中也观察到了这种对铁的感应紊乱。smf11突变体同时过度积累锰和铁,而锰的升高是铁超载的次要原因。与 Fe-S 生物发生突变体一样,smf11∆/∆ 突变体也会出现铁还原酶的上调,而铁还原酶在高铁元素条件下通常会被抑制,铁的输入也会被激活。然而,与 Fe-S 生物发生突变体不同,smf11∆/∆ 突变体的线粒体 Fe-S 酶没有缺陷。耐人寻味的是,白僵菌中编码铁还原酶的 fre1∆/∆ 突变体也会出现这种情况,即铁元素感应紊乱,但不抑制 Fe-S 簇。fre1 和 smf11 的突变体在细胞壁、丝状化和形态发生的 ROS 爆发(一个依赖铁的过程)中表现出类似的扰动。与 FRE1 一样,SMF11 对小鼠播散性念珠菌病模型中的毒力也很重要。我们提出了一个模型,在该模型中,FRE1 和 SMF11 在线粒体 Fe-S 通路之外运作,为铁感应提供亚铁。
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引用次数: 0
Leptospira Leptolysin Contributes to Serum Resistance but Is Not Essential for Acute Infection. 钩端螺旋体钩端溶解素有助于增强血清抵抗力,但对急性感染并非必不可少。
IF 2.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1111/mmi.15327
Daniella Dos Santos Courrol, Cassia Moreira Santos, Rosa Maria Chura-Chambi, Lígia Morganti, Kátia Eliane Santos Avelar, Fernanda de Moraes Maia, Rodrigo Nunes Rodrigues-da-Silva, Elsio Augusto Wunder, Angela Silva Barbosa

Previous in vitro works focusing on virulence determinants of the spirochete Leptospira implicated metalloproteinases as putative contributing factors to the pathogenicity of these bacteria. Those proteins have the capacity to degrade extracellular matrix components (ECM) and proteins of host's innate immunity, notably effectors of the complement system. In this study, we gained further knowledge on the role of leptolysin, one of the leptospiral-secreted metalloproteinases, previously described as having a broad substrate specificity. We demonstrated that a proportion of human patients with mild leptospirosis evaluated in the current study produced antibodies that recognize leptolysin, thus indicating that the protease is expressed during host infection. Using recombinant protein and a knockout mutant strain, Manilae leptolysin-, we determined that leptolysin contributes to Leptospira interrogans serum resistance in vitro, likely by proteolysis of complement molecules of the alternative, the classical, the lectin, and the terminal pathways. Furthermore, in a hamster model of infection, the mutant strain retained virulence; however, infected animals had lower bacterial loads in their kidneys. Further studies are necessary to better understand the role and potential redundancy of metalloproteinases on the pathogenicity of this important neglected disease.

以前对钩端螺旋体毒力决定因素的体外研究表明,金属蛋白酶是这些细菌致病性的潜在因素。这些蛋白有能力降解细胞外基质成分(ECM)和宿主先天免疫蛋白,特别是补体系统的效应物。在这项研究中,我们进一步了解了钩端螺旋体分泌的金属蛋白酶之一--钩端溶酶的作用。我们证明,在本次研究中评估的一部分轻度钩端螺旋体病患者产生了能识别钩端螺旋体蛋白的抗体,从而表明这种蛋白酶在宿主感染过程中得到了表达。利用重组蛋白和基因敲除突变株 Manilae leptolysin-,我们确定钩端螺旋体蛋白可能通过对替代、经典、凝集素和末端途径的补体分子进行蛋白分解,从而在体外对钩端螺旋体血清产生抗性。此外,在仓鼠感染模型中,突变株保持了毒性;但是,受感染动物肾脏中的细菌负荷较低。为了更好地了解金属蛋白酶在这种重要的被忽视疾病的致病性中的作用和潜在冗余性,有必要开展进一步的研究。
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引用次数: 0
Capsular Polysaccharide Production in Bacteria of the Mycoplasma Genus: A Huge Diversity of Pathways and Synthases for So-Called Minimal Bacteria. 支原体属细菌的囊状多糖生产:所谓最小细菌的途径和合成酶的巨大多样性。
IF 2.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-30 DOI: 10.1111/mmi.15325
Manon Vastel, Corinne Pau-Roblot, Séverine Ferré, Véronique Tocqueville, Chloé Ambroset, Corinne Marois-Créhan, Anne V Gautier-Bouchardon, Florence Tardy, Patrice Gaurivaud

Mycoplasmas are wall-less bacteria with many species spread across various animal hosts in which they can be pathogenic. Despite their reduced anabolic capacity, some mycoplasmas are known to secrete hetero- and homopolysaccharides, which play a role in host colonization through biofilm formation or immune evasion, for instance. This study explores how widespread the phenomenon of capsular homopolysaccharide secretion is within mycoplasmas, and investigates the diversity of both the molecules produced and the synthase-type glycosyltransferases responsible for their production. Fourteen strains representing 14 (sub)species from four types of hosts were tested in vitro for their polysaccharide secretion using both specific (immunodetection) and nonspecific (sugar dosage) assays. We evidenced a new, atypical homopolymer of β-(1 → 6)-glucofuranose (named glucofuranan) in the human pathogen Mycoplasma (M.) fermentans, as well as a β-(1 → 6)-glucopyranose polymer for the turkey pathogen M. iowae and galactan (β-(1 → 6)-galactofuranose) and β-(1 → 2)-glucopyranose for M. bovigenitalium infecting ruminants. Sequence and phylogenetic analyses revealed a huge diversity of synthases from varied Mycoplasma species. The clustering of these membrane-embedded glycosyltransferases into three main groups was only partially correlated to the structure of the produced homopolysaccharides.

支原体是一种无壁细菌,有许多种,分布在各种动物宿主中,它们可能是致病菌。尽管它们的合成代谢能力较低,但已知一些支原体会分泌杂多糖和同多糖,通过形成生物膜或免疫逃避等方式在宿主定植过程中发挥作用。本研究探讨了荚膜同源多糖分泌现象在支原体中的广泛程度,并研究了所产生的分子和负责产生这些分子的合成酶型糖基转移酶的多样性。我们利用特异性(免疫检测)和非特异性(糖剂量)测定法,对代表四种宿主的 14 个(亚)物种的 14 个菌株的多糖分泌情况进行了体外测试。我们在人类病原体支原体 (M.) fermentans 中发现了一种新的、非典型的 β-(1→6)-呋喃葡萄糖均聚物(命名为 glucofuranan)。发酵人支原体的β-(1 → 6)-葡呋喃糖聚合物,以及火鸡病原体 M. iowae 的半乳糖(β-(1 → 6)-半乳糖呋喃糖)和反刍动物感染的 M. bovigenitalium 的β-(1 → 2)-葡呋喃糖聚合物。序列和系统发育分析表明,来自不同支原体物种的合成酶具有巨大的多样性。这些膜嵌入式糖基转移酶分为三大类,但与所产生的同源多糖的结构只有部分关联。
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引用次数: 0
(p)ppGpp Buffers Cell Division When Membrane Fluidity Decreases in Escherichia coli 当大肠杆菌膜流动性降低时,(pp)ppGpp 可缓冲细胞分裂
IF 3.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-26 DOI: 10.1111/mmi.15323
Vani Singh, Rajendran Harinarayanan
Fluidity is an inherent property of biological membranes and its maintenance (homeoviscous adaptation) is important for optimal functioning of membrane‐associated processes. The fluidity of bacterial cytoplasmic membrane increases with temperature or an increase in the proportion of unsaturated fatty acids and vice versa. We found that strains deficient in the synthesis of guanine nucleotide analogs (p)ppGpp and lacking FadR, a transcription factor involved in fatty acid metabolism exhibited a growth defect that was rescued by an increase in growth temperature or unsaturated fatty acid content. The strain lacking (p)ppGpp was sensitive to genetic or chemical perturbations that decrease the proportion of unsaturated fatty acids over saturated fatty acids. Microscopy showed that the growth defect was associated with cell filamentation and lysis and rescued by combined expression of cell division genes ftsQ, ftsA, and ftsZ from plasmid or the gain‐of‐function ftsA* allele but not over‐expression of ftsN. The results implicate (p)ppGpp in positive regulation of cell division during membrane fluidity loss through enhancement of FtsZ proto‐ring stability. To our knowledge, this is the first report of a (p)ppGpp‐mediated regulation needed for adaptation to membrane fluidity loss in bacteria.
流动性是生物膜的固有特性,保持流动性(同黏适应)对膜相关过程的最佳运作非常重要。细菌细胞质膜的流动性随温度或不饱和脂肪酸比例的增加而增加,反之亦然。我们发现,缺乏鸟嘌呤核苷酸类似物 (p)ppGpp 合成的菌株和缺乏参与脂肪酸代谢的转录因子 FadR 的菌株表现出生长缺陷,而生长温度或不饱和脂肪酸含量的增加可挽救这种缺陷。缺乏 (p)ppGpp 的菌株对降低不饱和脂肪酸比例而不是饱和脂肪酸比例的遗传或化学扰动很敏感。显微镜检查显示,生长缺陷与细胞丝状化和溶解有关,通过质粒联合表达细胞分裂基因 ftsQ、ftsA 和 ftsZ 或功能增益的 ftsA* 等位基因可以挽救,但不能过度表达 ftsN。这些结果表明,(pp)ppGpp 通过增强 FtsZ 原环的稳定性,在膜流动性丧失过程中对细胞分裂起着积极的调节作用。据我们所知,这是首次报道细菌适应膜流动性丧失所需的(p)ppGpp 介导的调控。
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引用次数: 0
The Enteric Bacterium Enterococcus faecalis Elongates and Incorporates Exogenous Short and Medium Chain Fatty Acids Into Membrane Lipids 肠道细菌粪肠球菌拉长外源短链和中链脂肪酸并将其纳入膜脂中
IF 3.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-08 DOI: 10.1111/mmi.15322
Qi Zou, Huijuan Dong, John E. Cronan
Enterococcus faecalis incorporates and elongates exogeneous short- and medium-chain fatty acids to chains sufficiently long to enter membrane phospholipid synthesis. The acids are activated by the E. faecalis fatty acid kinase (FakAB) system and converted to acyl-ACP species that can enter the fatty acid synthesis cycle to become elongated. Following elongation the acyl chains are incorporated into phospholipid by the PlsY and PlsC acyltranferases. This process has little effect on de novo fatty acid synthesis in the case of short-chain acids, but a greater effect with medium-chain acids. Incorporation of exogenous short-chain fatty acids in E. faecalis was greatly increased by overexpression of either AcpA, the acyl carrier protein of fatty acid synthesis, or the phosphate acyl transferase PlsX. The PlsX of Lactococcus lactis was markedly superior to the E. faecalis PlsX in incorporation of short-chain but not long-chain acids. These manipulations also allowed unsaturated fatty acids of lengths too short for direct transfer to the phospholipid synthesis pathway to be elongated and support growth of E. faecalis unsaturated fatty acid auxotrophic strains. Short- and medium-chain fatty acids can be abundant in the human gastrointestinal tract and their elongation by E. faecalis would conserve energy and carbon by relieving the requirement for total de novo synthesis of phospholipid acyl chains.
粪肠球菌将外来的短链和中链脂肪酸结合并拉长至足够长的链,以进入膜磷脂合成。这些脂肪酸被粪肠球菌脂肪酸激酶(FakAB)系统激活,并转化为可进入脂肪酸合成循环的酰基-ACP 物种,使其变长。伸长后,酰基链通过 PlsY 和 PlsC酰基转化酶与磷脂结合。这一过程对短链脂肪酸的从头合成影响很小,但对中链脂肪酸的影响较大。通过过量表达脂肪酸合成的酰基载体蛋白 AcpA 或磷酸酰基转移酶 PlsX,粪肠球菌中外源短链脂肪酸的掺入量大大增加。在结合短链酸而非长链酸方面,乳酸乳球菌的 PlsX 明显优于粪肠球菌的 PlsX。这些操作还允许长度太短、无法直接转移到磷脂合成途径的不饱和脂肪酸被拉长,并支持粪肠球菌不饱和脂肪酸辅助菌株的生长。中短链脂肪酸在人体胃肠道中含量丰富,粪肠球菌拉长中短链脂肪酸可以缓解磷脂酰基链从头合成的需要,从而节省能量和碳。
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引用次数: 0
The dual role of a novel Sinorhizobium meliloti chemotaxis protein CheT in signal termination and adaptation. 新型瓜萎镰刀菌趋化蛋白CheT在信号终止和适应中的双重作用
IF 2.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-30 DOI: 10.1111/mmi.15303
Alfred Agbekudzi, Timofey D Arapov, Ann M Stock, Birgit E Scharf

Sinorhizobium meliloti senses nutrients and compounds exuded from alfalfa host roots and coordinates an excitation, termination, and adaptation pathway during chemotaxis. We investigated the role of the novel S. meliloti chemotaxis protein CheT. While CheT and the Escherichia coli phosphatase CheZ share little sequence homology, CheT is predicted to possess an α-helix with a DXXXQ phosphatase motif. Phosphorylation assays demonstrated that CheT dephosphorylates the phosphate-sink response regulator, CheY1~P by enhancing its decay two-fold but does not affect the motor response regulator CheY2~P. Isothermal Titration Calorimetry (ITC) experiments revealed that CheT binds to a phosphomimic of CheY1~P with a KD of 2.9 μM, which is 25-fold stronger than its binding to CheY1. Dissimilar chemotaxis phenotypes of the ΔcheT mutant and cheT DXXXQ phosphatase mutants led to the hypothesis that CheT exerts additional function(s). A screen for potential binding partners of CheT revealed that it forms a complex with the methyltransferase CheR. ITC experiments confirmed CheT/CheR binding with a KD of 19 μM, and a SEC-MALS analysis determined a 1:1 and 2:1 CheT/CheR complex formation. Although they did not affect each other's enzymatic activity, CheT binding to CheY1~P and CheR may serve as a link between signal termination and sensory adaptation.

瓜萎镰刀菌(Sinorhizobium meliloti)能感知从紫花苜蓿宿主根部渗出的营养物质和化合物,并在趋化过程中协调激发、终止和适应途径。我们研究了新型 S. meliloti 趋化蛋白 CheT 的作用。虽然CheT与大肠杆菌磷酸酶CheZ的序列几乎没有同源性,但CheT被认为具有一个带有DXXXQ磷酸酶基序的α-螺旋。磷酸化试验表明,CheT 可使磷酸-沉降反应调节因子 CheY1~P 去磷酸化,使其衰变增强两倍,但不会影响运动反应调节因子 CheY2~P。等温滴定量热法(ITC)实验显示,CheT 与 CheY1~P 的磷酸模拟物结合的 KD 值为 2.9 μM,是其与 CheY1 结合强度的 25 倍。ΔcheT 突变体和 cheT DXXXQ 磷酸化酶突变体的趋化表型不同,这导致了一种假设,即 CheT 发挥了额外的功能。对 CheT 潜在结合伙伴的筛选显示,它与甲基转移酶 CheR 形成了复合物。ITC 实验证实 CheT 与 CheR 的结合 KD 为 19 μM,SEC-MALS 分析确定 CheT 与 CheR 形成了 1:1 和 2:1 的复合物。虽然它们并不影响彼此的酶活性,但 CheT 与 CheY1~P 和 CheR 的结合可能是信号终止和感觉适应之间的联系。
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引用次数: 0
Cytosolic Factors Controlling PASTA Kinase-Dependent ReoM Phosphorylation. 控制 PASTA 激酶依赖性 ReoM 磷酸化的细胞膜因素
IF 2.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-08 DOI: 10.1111/mmi.15307
Patricia Rothe, Sabrina Wamp, Lisa Rosemeyer, Jeanine Rismondo, Joerg Doellinger, Angelika Gründling, Sven Halbedel

Bacteria adapt the biosynthesis of their envelopes to specific growth conditions and prevailing stress factors. Peptidoglycan (PG) is the major component of the cell wall in Gram-positive bacteria, where PASTA kinases play a central role in PG biosynthesis regulation. Despite their importance for growth, cell division and antibiotic resistance, the mechanisms of PASTA kinase activation are not fully understood. ReoM, a recently discovered cytosolic phosphoprotein, is one of the main substrates of the PASTA kinase PrkA in the Gram-positive human pathogen Listeria monocytogenes. Depending on its phosphorylation, ReoM controls proteolytic stability of MurA, the first enzyme in the PG biosynthesis pathway. The late cell division protein GpsB has been implicated in PASTA kinase signalling. Consistently, we show that L. monocytogenes prkA and gpsB mutants phenocopied each other. Analysis of in vivo ReoM phosphorylation confirmed GpsB as an activator of PrkA leading to the description of structural features in GpsB that are important for kinase activation. We further show that ReoM phosphorylation is growth phase-dependent and that this kinetic is reliant on the protein phosphatase PrpC. ReoM phosphorylation was inhibited in mutants with defects in MurA degradation, leading to the discovery that MurA overexpression prevented ReoM phosphorylation. Overexpressed MurA must be able to bind its substrates and interact with ReoM to exert this effect, but the extracellular PASTA domains of PrkA or MurJ flippases were not required. Our results indicate that intracellular signals control ReoM phosphorylation and extend current models describing the mechanisms of PASTA kinase activation.

细菌会根据特定的生长条件和普遍存在的压力因素调整其包膜的生物合成。肽聚糖(PG)是革兰氏阳性细菌细胞壁的主要成分,其中 PASTA 激酶在 PG 生物合成调控中发挥着核心作用。尽管 PASTA 激酶对细菌的生长、细胞分裂和抗生素耐药性非常重要,但人们对其激活机制还不完全了解。ReoM 是最近发现的一种细胞磷蛋白,是人类革兰氏阳性病原体李斯特菌中 PASTA 激酶 PrkA 的主要底物之一。根据其磷酸化程度,ReoM 可控制 PG 生物合成途径中第一个酶 MurA 的蛋白水解稳定性。细胞分裂后期蛋白 GpsB 与 PASTA 激酶信号传导有关。同样,我们发现单核细胞增多性乳酸杆菌 prkA 和 gpsB 突变体相互表型。对体内 ReoM 磷酸化的分析证实 GpsB 是 PrkA 的激活剂,从而描述了 GpsB 中对激酶激活非常重要的结构特征。我们进一步发现,ReoM 磷酸化依赖于生长阶段,而这种动力学依赖于蛋白磷酸酶 PrpC。在 MurA 降解缺陷的突变体中,ReoM 磷酸化受到抑制,从而发现 MurA 过表达能阻止 ReoM 磷酸化。过表达的 MurA 必须能够结合其底物并与 ReoM 相互作用才能产生这种效果,但 PrkA 或 MurJ 翻转酶的细胞外 PASTA 结构域并不是必需的。我们的研究结果表明,细胞内信号控制着 ReoM 的磷酸化,并扩展了目前描述 PASTA 激酶激活机制的模型。
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引用次数: 0
Differential CheR Affinity for Chemoreceptor C-Terminal Pentapeptides Modulates Chemotactic Responses. 化学感受器 C 端五肽的不同亲和力调节趋化反应
IF 2.6 2区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-08-23 DOI: 10.1111/mmi.15305
Félix Velando, Elizabet Monteagudo-Cascales, Miguel A Matilla, Tino Krell

Many chemoreceptors contain a C-terminal pentapeptide at the end of a linker. In Escherichia coli, this pentapeptide forms a high-affinity binding site for CheR and phosphorylated CheB, and its removal interferes with chemoreceptor adaptation. Analysis of chemoreceptors revealed significant variation in their pentapeptide sequences, and bacteria often possess multiple chemoreceptors with differing pentapeptides. To assess whether this sequence variation alters CheR affinity and chemotaxis, we used Pectobacterium atrosepticum SCRI1043 as a model. SCRI1043 has 36 chemoreceptors, with 19 of them containing a C-terminal pentapeptide. We show that the affinity of CheR for the different pentapeptides varies up to 11-fold (KD 90 nM to 1 μM). Pentapeptides with the highest and lowest affinities differ only in a single amino acid. Deletion of the cheR gene abolishes chemotaxis. The replacement of the pentapeptide in the PacC chemoreceptor with those of the highest and lowest affinities significantly reduced chemotaxis to its cognate chemoeffector, L-Asp. Altering the PacC pentapeptide also reduced chemotaxis to L-Ser, but not to nitrate, which are responses mediated by the nontethered PacB and PacN chemoreceptors, respectively. Changes in the pentapeptide sequence thus modulate the response of the cognate receptor and that of another chemoreceptor.

许多化学感受器在连接体末端都含有一个 C 端五肽。在大肠杆菌中,这种五肽与 CheR 和磷酸化的 CheB 形成高亲和力结合位点,去除这种结合位点会干扰化学感受器的适应性。对化学感受器的分析表明,它们的五肽序列存在显著差异,细菌通常拥有多个五肽不同的化学感受器。为了评估这种序列变异是否会改变化学感受器的亲和性和趋化性,我们使用了无核果胶杆菌 SCRI1043 作为模型。SCRI1043 有 36 个化学感受器,其中 19 个含有 C 端五肽。我们发现,CheR 对不同五肽的亲和力最多相差 11 倍(KD 值从 90 nM 到 1 μM)。亲和力最高和最低的五肽只有一个氨基酸不同。缺失 cheR 基因后,趋化性消失。用亲和力最高和最低的五肽替换 PacC 化学感受器中的五肽,可显著降低对其同源化学效应物 L-Asp 的趋化性。改变 PacC 五肽也会降低对 L-Ser 的趋化性,但不会降低对硝酸盐的趋化性。因此,五肽序列的变化可调节同源受体和另一种化学感受器的反应。
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Molecular Microbiology
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