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Systems biology of molecular chaperone networks. 分子伴侣网络的系统生物学。
Pub Date : 2008-01-01 DOI: 10.1002/9780470754030.ch4
Péter Csermely, Tamás Korcsmáros, István A Kovács, Máté S Szalay, Csaba Soti

Molecular chaperones are not only fascinating molecular machines that help the folding, refolding, activation or assembly of other proteins, but also have a number of functions. These functions can be understood only by considering the emergent properties of cellular networks--and that of chaperones as special network constituents. As a notable example for the network-related roles of chaperones they may act as genetic buffers stabilizing the phenotype of various cells and organisms, and may serve as potential regulators of evolvability. Why are chaperones special in the context of cellular networks? Chaperones: (1) have weak links, i.e. low affinity, transient interactions with most of their partners; (2) connect hubs, i.e. act as 'masterminds' of the cell being close to several centre proteins with a lot of neighbours; and (3) are in the overlaps of network modules, which confers upon them a special regulatory role. Importantly, chaperones may uncouple or even quarantine modules of protein-protein interaction networks, signalling networks, genetic regulatory networks and membrane organelle networks during stress, which gives an additional chaperone-mediated protection for the cell at the network-level. Moreover, chaperones are essential to rebuild inter-modular contacts after stress by their low affinity, 'quasi-random' sampling of the potential interaction partners in different cellular modules. This opens the way to the chaperone-regulated modular evolution of cellular networks, and helps us to design novel therapeutic and anti-ageing strategies.

分子伴侣不仅是帮助其他蛋白质折叠、再折叠、激活或组装的令人着迷的分子机器,而且还具有许多功能。这些功能只能通过考虑细胞网络的涌现特性——以及作为特殊网络成分的伴侣的涌现特性来理解。作为伴侣蛋白网络相关作用的一个显著例子,它们可能作为稳定各种细胞和生物体表型的遗传缓冲,并可能作为可进化性的潜在调节因子。为什么伴侣在蜂窝网络中如此特殊?伴侣:(1)与大多数伴侣存在弱联系,即低亲和力,短暂互动;(2)连接枢纽,即充当细胞的“策划者”,靠近几个有很多邻居的中心蛋白;和(3)位于网络模块的重叠部分,这使它们具有特殊的调节作用。重要的是,在应激过程中,伴侣蛋白可以解耦甚至隔离蛋白-蛋白相互作用网络、信号网络、遗传调控网络和膜细胞器网络的模块,这在网络水平上为细胞提供了额外的伴侣蛋白介导的保护。此外,通过对不同细胞模块中潜在相互作用伙伴的低亲和力、“准随机”抽样,伴侣在压力后重建模块间接触是必不可少的。这为细胞网络的伴侣调节模块化进化开辟了道路,并帮助我们设计新的治疗和抗衰老策略。
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引用次数: 17
Cell stress proteins as modulators of bacteria--host interactions. 细胞应激蛋白作为细菌-宿主相互作用的调节剂。
Pub Date : 2008-01-01 DOI: 10.1002/9780470754030.ch11
Brian Henderson

Multicellular organisms exist in dynamic equilibrium with bacterial populations, either in the form of the microbiota of the organism or as pathogens. A challenge to 21st century systems biology is to determine the networks of interactions that exist between the prokaryotic and eukaryotic components of multicellular organisms. Bacterial colonization is stressful for both the prokaryotic and eukaryotic components of an organism and it is emerging that the cell stress proteins (CSPs) of both bacteria and host play roles in the interaction between both Kingdoms. In addition to acting intracellularly to fold proteins, it is being established that CSPs have a wide range of moonlighting functions that are relevant to controlling bacterial colonization. Thus host CSPs can act as cell surface receptors to bind bacteria or to respond to their components. Host CSPs are also secreted into the extracellular fluid where they modulate leukocyte function, potentially to activate antibacterial defences. Bacteria, in turn, have evolved CSPs with adhesive properties for the host. Bacterial CSPs can also modulate host leukocyte function and can induce cellular apoptosis. In insects, endosymbiotic bacteria provide bacterial CSPs which are utilised by the host. Bacterial CSPs have also been shown to be antibacterial targets. These findings establish a range of roles for CSPs in bacteria-host interactions.

多细胞生物存在于与细菌种群的动态平衡中,要么以微生物群的形式存在,要么以病原体的形式存在。21世纪系统生物学面临的一个挑战是确定多细胞生物的原核和真核组分之间存在的相互作用网络。细菌定植对生物体的原核和真核成分都是有压力的,并且细菌和宿主的细胞应激蛋白(CSPs)在两者之间的相互作用中起作用。除了作用于细胞内折叠蛋白质外,已经确定csp具有广泛的兼职功能,与控制细菌定植有关。因此宿主csp可以作为细胞表面受体结合细菌或对其成分作出反应。宿主csp也被分泌到细胞外液中,在那里它们调节白细胞的功能,潜在地激活抗菌防御。反过来,细菌进化出了对宿主具有粘附特性的csp。细菌CSPs还能调节宿主白细胞功能,诱导细胞凋亡。在昆虫中,内共生细菌提供宿主利用的细菌csp。细菌CSPs也被证明是抗菌靶点。这些发现确定了csp在细菌-宿主相互作用中的一系列作用。
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引用次数: 3
Chaperonin 60 and macrophage activation. 伴侣蛋白60与巨噬细胞活化。
Pub Date : 2008-01-01 DOI: 10.1002/9780470754030.ch12
Anthony R M Coates, Ana Cehovin, Yanmin Hu

Eukaryotic and prokaryotic chaperonin 60s (Cpn60s) activate macrophages to produce pro-inflammatory cytokines. CD14 and TLR4 have been proposed as potential Cpn receptors. In addition, Cpn60s can block LPS-induced activation. This is a dose-related effect, low concentrations block, and high concentrations activate. This may relate to the ability of Cpn60s to block inflammatory disease. Cpns are multiplex or moon-lighting proteins, with functions as molecular chaperones, in stress survival and as inflammatory modulators. A cpn60.1 knockout mutant does not induce a granulomatous response and cytokine levels, such as tumour necrosis factor are reduced in the tissues. These data suggest that Cpn60.1 may also function as a virulence factor.

真核生物和原核生物伴侣蛋白60 (cpn60)激活巨噬细胞产生促炎细胞因子。CD14和TLR4被认为是潜在的Cpn受体。此外,Cpn60s可以阻断lps诱导的激活。这是一种剂量相关效应,低浓度阻断,高浓度激活。这可能与cpn60阻断炎性疾病的能力有关。Cpns是一种多重或月光蛋白,具有分子伴侣、应激生存和炎症调节剂的功能。cpn60.1基因敲除突变体不会诱导肉芽肿反应,组织中的细胞因子水平(如肿瘤坏死因子)降低。这些数据表明,Cpn60.1也可能是一个毒力因子。
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引用次数: 2
Towards a curative therapy in type 1 diabetes: remission of autoimmunity, maintenance and augmentation of beta cell mass. 迈向1型糖尿病的治愈性治疗:自身免疫的缓解,β细胞质量的维持和增加。
Pub Date : 2008-01-01 DOI: 10.1002/9780470697405.ch14
Frank Waldron-Lynch, Matthias von Herrath, Kevan C Herold

Recent clinical trials have shown that the loss of insulin production that characterizes progressive type 1 diabetes mellitus can be attenuated by treatment with non-FcR binding anti-CD3 monoclonal antibody (mAb). This approach is a first step towards the ultimate goals of treatment: to improve and maintain insulin production. However, additional interventions will be needed because, with time, there is progressive loss of insulin production after treatment with a single course of anti-CD3 mAb. The basis for the long-term loss of insulin production after immune therapy is not known because animal models have not been informative about the mechanisms, and there are not biomarkers of autoimmunity that can be used to monitor the process. Therefore, strategies for clinical testing might involve both beta cell and immunological therapies. Examples of the former include agents such as GLP1 receptor agonists or DPPIV inhibitors which increase beta cell insulin content. Preclinical data suggest that co-administration of antigen with anti-CD3 mAb can induce a tolerogenic response to the antigen that may then be administered to maintain tolerance. In addition, other immunological approaches as well as interventions earlier in the disease process may be successful in maintaining greater beta cell function for extended periods.

最近的临床试验表明,非fcr结合抗cd3单克隆抗体(mAb)治疗可以减轻进展型1型糖尿病的胰岛素分泌损失。这种方法是朝着治疗的最终目标迈出的第一步:改善和维持胰岛素的产生。然而,还需要额外的干预措施,因为随着时间的推移,单疗程抗cd3单抗治疗后胰岛素产生会逐渐减少。免疫治疗后胰岛素产生的长期损失的基础尚不清楚,因为动物模型尚未提供有关其机制的信息,并且没有可用于监测该过程的自身免疫生物标志物。因此,临床测试的策略可能包括β细胞和免疫治疗。前者的例子包括GLP1受体激动剂或DPPIV抑制剂等增加β细胞胰岛素含量的药物。临床前数据表明,抗原与抗cd3单抗的联合施用可以诱导对抗原的耐受性反应,然后可以通过给药来维持耐受性。此外,其他免疫方法以及在疾病过程的早期干预可能成功地在较长时间内维持更大的β细胞功能。
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引用次数: 17
Type 1 diabetes: chronic progressive autoimmune disease. 1型糖尿病:慢性进行性自身免疫性疾病。
Pub Date : 2008-01-01 DOI: 10.1002/9780470697405.ch7
Li Zhang, Roberto Gianani, Maki Nakayama, Edwin Liu, Masakazu Kobayashi, Erin Baschal, Liping Yu, Sunanda Babu, Abby Dawson, Kelly Johnson, Mohamed Jahromi, Theresa Aly, Pamela Fain, Jennifer Barker, Marian Rewers, George S Eisenbarth

A wealth of data in animal models indicates that type 1A diabetes results from T cell-mediated specific destruction of islet beta cells. There is evidence for the NOD mouse model that insulin is the primary autoantigen and a specific insulin peptide B:9-23 is central to pathogenesis. It is also now possible to predict the development of type 1A (immune mediated) diabetes for the great majority of individuals with a combination of genetic, immunological and metabolic parameters. Such prediction is possible because of the chronic nature of the autoimmunity and loss of beta cell function that precedes the disease. Given the ability to predict type 1A diabetes trials at all stages of the disorder to prevent beta cell destruction are now possible.

动物模型的大量数据表明,1A型糖尿病是由T细胞介导的胰岛β细胞特异性破坏引起的。NOD小鼠模型的证据表明,胰岛素是主要的自身抗原,特异性胰岛素肽B:9-23是发病的核心。现在也可以通过遗传、免疫和代谢参数的组合来预测绝大多数个体的1A型(免疫介导的)糖尿病的发展。这种预测是可能的,因为自身免疫的慢性性质和疾病之前β细胞功能的丧失。鉴于能够预测1A型糖尿病的所有阶段的试验,以防止细胞破坏现在是可能的。
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引用次数: 32
Mechanisms of neuregulin action. 神经调节蛋白的作用机制。
Pub Date : 2008-01-01 DOI: 10.1002/9780470751251.ch6
David A Talmage

Neuregulin 1 (Nrg1) and ErbB receptor tyrosine kinase signalling is essential for the formation and proper functioning of multiple organ systems and inappropriate Nrgl/ErbB signalling severely compromises health, contributing to such diverse pathologies as cancer and neuropsychiatric disorders. Numerous genetic modelling studies in mice demonstrate that Nrg1 signalling is important in the development of normal neuronal connectivity. Recent studies have identified novel signalling mechanisms and revealed unexpected roles of Nrg1 isoforms in both the developing and adult nervous system. Of particular interest to this discussion are findings linking deficits in Nrg1-ErbB4 signalling to perturbations of synaptic transmission, myelination, and the survival of particular sets of neurons and glia.

神经调节蛋白1 (Nrg1)和ErbB受体酪氨酸激酶信号对于多器官系统的形成和正常功能至关重要,不适当的Nrgl/ErbB信号严重损害健康,导致癌症和神经精神疾病等多种病理。大量的小鼠遗传模型研究表明,Nrg1信号在正常神经元连接的发展中很重要。最近的研究发现了新的信号机制,并揭示了Nrg1亚型在发育和成人神经系统中的意想不到的作用。本讨论特别感兴趣的是Nrg1-ErbB4信号缺陷与突触传递、髓鞘形成和特定神经元和胶质细胞存活的扰动之间的联系。
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引用次数: 60
Translating mucosal antigen based prevention of autoimmune diabetes to human. 翻译粘膜抗原为基础的自身免疫性糖尿病的预防。
Pub Date : 2008-01-01 DOI: 10.1002/9780470697405.ch17
Ezio Bonifacio, Anette Ziegler, Peter Achenbach, Jennifer Barker, George Eisenbarth

Mucosal administration of autoantigen (insulin) to animal models has been demonstrated to be effective in preventing autoimmune diabetes. Efficacy is dependent upon the dose and the age at which it is delivered. Because of its low toxicity, mucosal administration of insulin represents an attractive preventive therapy in human. Translation of what is efficacious in animal models is, however, challenging. We have proposed mucosal insulin vaccination as a primary prevention strategy in children on the basis that children with extreme type 1 diabetes risk (> 50%) can be identified and that insulin has been shown to be the first target of autoimmunity in children. Novel, and similar to what is efficacious in mice, is that insulin will be administered when the children are still autoantibody negative in order to induce protective immunity prior to initiation of autoimmunity. The efficacy of increasing doses of mucosal insulin to induce protective immunity will be assessed as the primary end point of the trial. The rationale for primary vaccination and the trial strategy are discussed.

动物模型粘膜注射自身抗原(胰岛素)已被证明可有效预防自身免疫性糖尿病。疗效取决于给药的剂量和年龄。由于其低毒性,胰岛素粘膜给药是一种有吸引力的人类预防治疗方法。然而,在动物模型中翻译什么是有效的是具有挑战性的。我们建议将粘膜胰岛素疫苗接种作为儿童的一级预防策略,因为可以识别出具有极端1型糖尿病风险(> 50%)的儿童,并且胰岛素已被证明是儿童自身免疫的首要目标。新颖的是,与在小鼠中有效的方法类似,在儿童自身抗体为阴性时施用胰岛素,以便在启动自身免疫之前诱导保护性免疫。增加粘膜胰岛素剂量诱导保护性免疫的效果将作为试验的主要终点进行评估。讨论了初级疫苗接种的基本原理和试验策略。
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引用次数: 6
Hippocampal neurogenesis and depression. 海马神经发生和抑郁。
Pub Date : 2008-01-01 DOI: 10.1002/9780470751251.ch12
Amar Sahay, René Hen

Various chronic antidepressant treatments increase adult hippocampal neurogenesis, but the functional importance of this phenomenon remains unclear. Using radiological and genetic methods, we show that disrupting neurogenesis blocks behavioural responses to antidepressants. X-irradiation of a restricted region of mouse brain containing the hippocampus prevented the neurogenic and behavioural effects of two classes of antidepressants. Similarly, a genetic strategy that ablates adult progenitor cells resulted in a lack of effect of antidepressants. In addition, we have identified a form of long-term potentiation in the dentate gyrus that is dependent on the presence of young neurons and which is stimulated by antidepressants. These findings suggest that the behavioural effects of chronic antidepressants require hippocampal neurogenesis and are mediated by an increased synaptic plasticity in the dentate gyrus.

各种慢性抗抑郁药物治疗增加成人海马神经发生,但这一现象的功能重要性尚不清楚。使用放射学和遗传学方法,我们表明破坏神经发生阻断对抗抑郁药的行为反应。x射线照射小鼠大脑中含有海马体的有限区域,可以防止两类抗抑郁药的神经源性和行为效应。类似地,一种基因策略,即消融成人祖细胞,导致抗抑郁药的效果不足。此外,我们已经确定了齿状回中的一种长期增强形式,它依赖于年轻神经元的存在,并受到抗抑郁药的刺激。这些发现表明,慢性抗抑郁药的行为影响需要海马神经发生,并由齿状回突触可塑性增加介导。
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引用次数: 54
Cell biology of BDNF and its relevance to schizophrenia. BDNF的细胞生物学及其与精神分裂症的相关性。
Pub Date : 2008-01-01 DOI: 10.1002/9780470751251.ch10
Bai Lu, Keri Martinowich

BDNF is a key regulator of synaptic plasticity and hence is thought to be uniquely important for various cognitive functions. While correlations of schizophrenia with polymorphisms in the BDNF gene and changes in BDNF mRNA levels have been reported, specific links remain to be established. Cell biology studies may provide clues as to how BDNF signalling impacts schizophrenia aetiology and pathogenesis: (1) the Val-Met polymorphism in the pro-domain affects activity-dependent BDNF secretion and short-term, hippocampus-mediated episodic memory. (2) pro-BDNF and mBDNF, by interacting with their respective p75(NTR) and TrkB receptors, facilitate long-term depression (LTD) and long-term potentiation (LTP), two common forms of synaptic plasticity working in opposing directions. (3) BDNF transcription is controlled by four promoters, which drive expression of four BDNF-encoding transcripts in different brain regions, cell types and subcellular compartments (dendrites, cell body, etc.), and each is regulated by different genetic and environmental factors. A role for BDNF in early- and late-phase LTP and short- and long-term, hippocampal-dependent memory has been firmly established. Extending these studies to synaptic plasticity in other areas of the brain may help us to better understand how altered BDNF signalling could contribute to intermediate phenotypes associated with schizophrenia.

BDNF是突触可塑性的关键调节因子,因此被认为对各种认知功能具有独特的重要作用。虽然已经报道了精神分裂症与BDNF基因多态性和BDNF mRNA水平变化之间的相关性,但具体的联系仍有待建立。细胞生物学研究可能为BDNF信号传导如何影响精神分裂症的病因和发病机制提供线索:(1)前域的Val-Met多态性影响活动依赖性BDNF分泌和海马介导的短期情景记忆。(2) pro-BDNF和mBDNF通过与各自的p75(NTR)和TrkB受体相互作用,促进长期抑制(LTD)和长期增强(LTP),这两种常见的突触可塑性形式在相反的方向上工作。(3) BDNF转录受四种启动子控制,这四种启动子驱动四种编码BDNF转录物在不同脑区、细胞类型和亚细胞区室(树突、细胞体等)的表达,每一种启动子受不同遗传和环境因素的调控。BDNF在早期和晚期LTP以及短期和长期海马依赖记忆中的作用已经被明确确立。将这些研究扩展到大脑其他区域的突触可塑性,可能有助于我们更好地理解BDNF信号的改变如何导致与精神分裂症相关的中间表型。
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引用次数: 96
Growth factors and psychiatric disorders. Introduction. 生长因子和精神障碍。介绍。
Pub Date : 2008-01-01
Moses Chao
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引用次数: 0
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