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Challenges and applications in generative AI for clinical tabular data in physiology. 生理学临床表格数据生成式人工智能的挑战与应用。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-17 DOI: 10.1007/s00424-024-03024-w
Chaithra Umesh, Manjunath Mahendra, Saptarshi Bej, Olaf Wolkenhauer, Markus Wolfien

Recent advancements in generative approaches in AI have opened up the prospect of synthetic tabular clinical data generation. From filling in missing values in real-world data, these approaches have now advanced to creating complex multi-tables. This review explores the development of techniques capable of synthesizing patient data and modeling multiple tables. We highlight the challenges and opportunities of these methods for analyzing patient data in physiology. Additionally, it discusses the challenges and potential of these approaches in improving clinical research, personalized medicine, and healthcare policy. The integration of these generative models into physiological settings may represent both a theoretical advancement and a practical tool that has the potential to improve mechanistic understanding and patient care. By providing a reliable source of synthetic data, these models can also help mitigate privacy concerns and facilitate large-scale data sharing.

人工智能生成方法的最新进展开辟了合成表格临床数据生成的前景。从填补真实世界数据中的缺失值,这些方法现已发展到创建复杂的多表格。本综述探讨了能够合成患者数据和多表建模的技术的发展。我们强调了这些方法在生理学患者数据分析中面临的挑战和机遇。此外,它还讨论了这些方法在改进临床研究、个性化医疗和医疗保健政策方面的挑战和潜力。将这些生成模型整合到生理学环境中,既是理论上的进步,也是有可能提高机理理解和患者护理的实用工具。通过提供可靠的合成数据源,这些模型还有助于减轻对隐私的担忧,促进大规模数据共享。
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引用次数: 0
Pioneering new paths: the role of generative modelling in neurological disease research. 开辟新道路:生成模型在神经疾病研究中的作用。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-08 DOI: 10.1007/s00424-024-03016-w
Moritz Seiler, Kerstin Ritter

Recently, deep generative modelling has become an increasingly powerful tool with seminal work in a myriad of disciplines. This powerful modelling approach is supposed to not only have the potential to solve current problems in the medical field but also to enable personalised precision medicine and revolutionise healthcare through applications such as digital twins of patients. Here, the core concepts of generative modelling and popular modelling approaches are first introduced to consider the potential based on methodological concepts for the generation of synthetic data and the ability to learn a representation of observed data. These potentials will be reviewed using current applications in neuroimaging for data synthesis and disease decomposition in Alzheimer's disease and multiple sclerosis. Finally, challenges for further research and applications will be discussed, including computational and data requirements, model evaluation, and potential privacy risks.

近来,深度生成建模已成为一种日益强大的工具,在众多学科领域都有开创性的工作。这种强大的建模方法不仅有望解决目前医学领域的问题,还能通过患者数字孪生等应用,实现个性化精准医疗,彻底改变医疗保健行业。在此,我们将首先介绍生成式建模的核心概念和流行的建模方法,然后根据生成合成数据的方法学概念和学习观察数据表示的能力来考虑其潜力。通过目前在神经影像学中对阿尔茨海默病和多发性硬化症的数据合成和疾病分解的应用,对这些潜力进行回顾。最后,将讨论进一步研究和应用所面临的挑战,包括计算和数据要求、模型评估和潜在的隐私风险。
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引用次数: 0
Correction to: Persistent sodium currents in neurons: potential mechanisms and pharmacological blockers. 更正:神经元中的持续钠电流:潜在机制和药理阻断剂。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 DOI: 10.1007/s00424-024-02995-0
Peter Müller, Andreas Draguhn, Alexei V Egorov
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引用次数: 0
Stability of N-type inactivation and the coupling between N-type and C-type inactivation in the Aplysia Kv1 channel. plysia Kv1 通道中 N 型失活的稳定性以及 N 型和 C 型失活之间的耦合。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-15 DOI: 10.1007/s00424-024-02982-5
Tokunari Iwamuro, Kazuki Itohara, Yasuo Furukawa

The voltage-dependent potassium channels (Kv channels) show several different types of inactivation. N-type inactivation is a fast inactivating mechanism, which is essentially an open pore blockade by the amino-terminal structure of the channel itself or the auxiliary subunit. There are several functionally discriminatable slow inactivation (C-type, P-type, U-type), the mechanism of which is supposed to include rearrangement of the pore region. In some Kv1 channels, the actual inactivation is brought about by coupling of N-type and C-type inactivation (N-C coupling). In the present study, we focused on the N-C coupling of the Aplysia Kv1 channel (AKv1). AKv1 shows a robust N-type inactivation, but its recovery is almost thoroughly from C-type inactivated state owing to the efficient N-C coupling. In the I8Q mutant of AKv1, we found that the inactivation as well as its recovery showed two kinetic components apparently correspond to N-type and C-type inactivation. Also, the cumulative inactivation which depends on N-type mechanism in AKv1 was hindered in I8Q, suggesting that N-type inactivation of I8Q is less stable. We also found that Zn 2 + specifically accelerates C-type inactivation of AKv1 and that H382 in the pore turret is involved in the Zn 2 + binding. Because the region around Ile 8 (I8) in AKv1 has been suggested to be involved in the pre-block binding of the amino-terminal structure, our results strengthen a hypothesis that the stability of the pre-block state is important for stable N-type inactivation as well as the N-C coupling in the Kv1 channel inactivation.

电压依赖性钾通道(Kv 通道)有几种不同的失活类型。N 型失活是一种快速失活机制,其本质是通道本身或辅助亚基的氨基端结构对开放孔的阻断。有几种在功能上可区分的慢速失活(C 型、P 型、U 型),其机制应该包括孔区的重新排列。在某些 Kv1 通道中,实际的失活是由 N 型和 C 型失活耦合(N-C 耦合)引起的。在本研究中,我们重点研究了plysia Kv1 通道(AKv1)的 N-C 耦合。AKv1 表现出强烈的 N 型失活,但由于高效的 N-C 耦合,它几乎可以从 C 型失活状态完全恢复。在 AKv1 的 I8Q 突变体中,我们发现其失活和恢复表现出明显对应于 N 型和 C 型失活的两种动力学成分。此外,AKv1 中依赖于 N 型机制的累积失活在 I8Q 中受到阻碍,这表明 I8Q 的 N 型失活不太稳定。我们还发现,Zn 2 + 能特异性地加速 AKv1 的 C 型失活,孔转塔中的 H382 参与了 Zn 2 + 的结合。由于 AKv1 中 Ile 8(I8)周围的区域被认为参与了氨基末端结构的前阻断结合,我们的结果加强了一种假设,即前阻断状态的稳定性对于稳定的 N 型失活以及 Kv1 通道失活中的 N-C 耦合非常重要。
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引用次数: 0
Absence of claudin-3 does not alter intestinal absorption of phosphate in mice. 缺少 claudin-3 不会改变小鼠肠道对磷酸盐的吸收。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-08-08 DOI: 10.1007/s00424-024-02998-x
Zsuzsa Radványi, Udo Schnitzbauer, Eva Maria Pastor-Arroyo, Simone Hölker, Nina Himmerkus, Markus Bleich, Dominik Müller, Tilman Breiderhoff, Nati Hernando, Carsten A Wagner

Intestinal absorption of phosphate is bimodal, consisting of a transcellular pathway and a poorly characterized paracellular mode, even though the latter one contributes to the bulk of absorption under normal dietary conditions. Claudin-3 (Cldn3), a tight junction protein present along the whole intestine in mice, has been proposed to tighten the paracellular pathway for phosphate. The aim of this work was to characterize the phosphate-related phenotype of Cldn3-deficient mice. Cldn3-deficient mice and wildtype littermates were fed standard diet or challenged for 3 days with high dietary phosphate. Feces, urine, blood, intestinal segments and kidneys were collected. Measurements included fecal, urinary, and plasma concentrations of phosphate and calcium, plasma levels of phosphate-regulating hormones, evaluation of trans- and paracellular phosphate transport across jejunum and ileum, and analysis of intestinal phosphate and calcium permeabilities. Fecal and urinary excretion of phosphate as well as its plasma concentration was similar in both genotypes, under standard and high-phosphate diet. However, Cldn3-deficient mice challenged with high dietary phosphate had a reduced urinary calcium excretion and increased plasma levels of calcitriol. Intact FGF23 concentration was also similar in both groups, regardless of the dietary conditions. We found no differences either in intestinal phosphate transport (trans- or paracellular) and phosphate and calcium permeabilities between genotypes. The intestinal expression of claudin-7 remained unaltered in Cldn3-deficient mice. Our data do not provide evidence for a decisive role of Cldn3 for intestinal phosphate absorption and phosphate homeostasis. In addition, our data suggest a novel role of Cldn3 in regulating calcitriol levels.

肠道对磷酸盐的吸收是双模的,包括一个跨细胞途径和一个特征不明显的旁细胞模式,尽管后者在正常饮食条件下占吸收的大部分。Claudin-3(Cldn3)是一种存在于小鼠整条肠道的紧密连接蛋白,有人认为它能收紧磷酸盐的旁细胞途径。这项研究的目的是鉴定 Cldn3 缺失小鼠与磷酸盐相关的表型。给 Cldn3 缺失小鼠和野生型同窝小鼠喂食标准饮食或高磷酸盐饮食 3 天。收集粪便、尿液、血液、肠道和肾脏。测量包括粪便、尿液和血浆中磷酸盐和钙的浓度,血浆中磷酸盐调节激素的水平,评估磷酸盐在空肠和回肠中的跨细胞和旁细胞转运,以及分析肠道磷酸盐和钙的渗透性。在标准和高磷饮食条件下,两种基因型的动物粪便和尿液中磷酸盐的排泄量及其血浆浓度相似。然而,Cldn3缺陷小鼠在高磷酸盐饮食的挑战下,尿钙排泄量减少,血浆中钙三醇水平升高。无论饮食条件如何,两组小鼠体内的 FGF23 浓度也相似。我们发现,基因型之间的肠道磷酸盐转运(经细胞或旁细胞)以及磷酸盐和钙的渗透性均无差异。Cldn3缺陷小鼠肠道中Claudin-7的表达没有改变。我们的数据并未证明 Cldn3 在肠道磷酸盐吸收和磷酸盐稳态中的决定性作用。此外,我们的数据还表明了 Cldn3 在调节钙三醇水平方面的新作用。
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引用次数: 0
Mild hyperbaric oxygen exposure protects heart during ischemia/reperfusion and affects vascular relaxation. 轻度高压氧暴露可在缺血/再灌注期间保护心脏,并影响血管松弛。
IF 4.6 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-25 DOI: 10.1007/s00424-024-02992-3
Christopher Gutierrez, Magdalena Peirone, Andrea Carranza, Guillermo Di Girolamo, Patricia Bonazzola, Rocío Castilla

Mild hyperbaric oxygen therapy (mHBOT) is an adjuvant therapy used in conditions where tissue oxygenation is reduced and is implemented using pressures less than 1.5 ATA and 100% O2 (instead of the classical HBOT at 1.9-3 ATA) which results in cheaper, easier to implement, and equally effective. mHBOT is offered for wellness and beauty and as an anti-aging strategy, in spite of the absence of studies on the cardiovascular system. Consequently, we investigated the impact of mHBOT on the cardiovascular system. Mechanical and energetic parameters of isolated heart submitted to ischemia/reperfusion injury and arterial contractile response from mHBOT-exposed rats were evaluated. In the heart, mHBOT increased pre-ischemic velocity of contraction and ischemic end-diastolic pressure and developed pressure and contractile economy during reperfusion. mHBOT decreased infarct size and increased the plasma nitrite levels. In the artery, mHBOT increased acetylcholine sensitivity. mHBOT protects the heart during ischemia/reperfusion and affects vascular relaxation.

轻度高压氧疗法(mHBOT)是一种辅助疗法,用于组织氧合降低的情况,使用低于 1.5 ATA 的压力和 100% 的氧气(而不是 1.9-3 ATA 的传统高压氧),因此成本更低、更容易实施,而且同样有效。因此,我们研究了 mHBOT 对心血管系统的影响。我们评估了受到缺血/再灌注损伤的离体心脏的机械和能量参数,以及暴露于 mHBOT 的大鼠的动脉收缩反应。在心脏中,mHBOT 提高了缺血前的收缩速度和缺血时的舒张末压,并在再灌注期间提高了压力和收缩经济性。mHBOT 可在缺血/再灌注期间保护心脏,并影响血管松弛。
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引用次数: 0
Effect of hypoxia on GLP-1 secretion - an in vitro study using enteroendocrine STC-1 -cells as a model. 缺氧对 GLP-1 分泌的影响--以肠内分泌 STC-1 细胞为模型的体外研究。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-29 DOI: 10.1007/s00424-024-02996-z
Ravikant Sharma, Ghulam Shere Raza, Nalini Sodum, Jaroslaw Walkowiak, Karl-Heinz Herzig

Glucagon-like peptide (GLP)-1 is a hormone released by enteroendocrine L-cells after food ingestion. L-cells express various receptors for nutrient sensing including G protein-coupled receptors (GPRs). Intestinal epithelial cells near the lumen have a lower O2 tension than at the base of the crypts, which leads to hypoxia in L-cells. We hypothesized that hypoxia affects nutrient-stimulated GLP-1 secretion from the enteroendocrine cell line STC-1, the most commonly used model. In this study, we investigated the effect of hypoxia (1% O2) on alpha-linolenic acid (αLA) stimulated GLP-1 secretion and their receptor expressions. STC-1 cells were incubated for 12 h under hypoxia (1% O2) and treated with αLA to stimulate GLP-1 secretion. 12 h of hypoxia did not change basal GLP-1 secretion, but significantly reduced nutrient (αLA) stimulated GLP-1 secretion. In normoxia, αLA (12.5 μM) significantly stimulated (~ 5 times) GLP-1 secretion compared to control, but under hypoxia, GLP-1 secretion was reduced by 45% compared to normoxia. αLA upregulated GPR120, also termed free fatty acid receptor 4 (FFAR4), expressions under normoxia as well as hypoxia. Hypoxia downregulated GPR120 and GPR40 expression by 50% and 60%, respectively, compared to normoxia. These findings demonstrate that hypoxia does not affect the basal GLP-1 secretion but decreases nutrient-stimulated GLP-1 secretion. The decrease in nutrient-stimulated GLP-1 secretion was due to decreased GPR120 and GPR40 receptors expression. Changes in the gut environment and inflammation might contribute to the hypoxia of the epithelial and L-cells.

胰高血糖素样肽(GLP)-1 是肠内分泌 L 细胞在摄入食物后释放的一种激素。L 细胞表达多种营养感知受体,包括 G 蛋白偶联受体(GPRs)。靠近管腔的肠上皮细胞的氧气张力低于隐窝底部,这导致 L 细胞缺氧。我们假设缺氧会影响最常用的肠内分泌细胞株 STC-1 在营养物质刺激下分泌 GLP-1。在这项研究中,我们研究了缺氧(1% O2)对α-亚麻酸(αLA)刺激 GLP-1 分泌及其受体表达的影响。STC-1 细胞在缺氧(1% O2)条件下培养 12 小时,然后用 αLA 刺激 GLP-1 分泌。12 小时的缺氧不会改变基础 GLP-1 分泌,但会显著减少营养物质(αLA)刺激的 GLP-1 分泌。在常氧条件下,αLA(12.5 μM)能显著刺激 GLP-1 的分泌(约为对照组的 5 倍),但在缺氧条件下,GLP-1 的分泌比常氧条件下减少了 45%。与常氧相比,缺氧会使 GPR120 和 GPR40 的表达分别下调 50% 和 60%。这些研究结果表明,缺氧不会影响基础 GLP-1 分泌,但会降低营养物质刺激下的 GLP-1 分泌。营养物质刺激的 GLP-1 分泌减少是由于 GPR120 和 GPR40 受体表达的减少。肠道环境的变化和炎症可能是导致上皮细胞和 L 细胞缺氧的原因。
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引用次数: 0
Emerging connections between Piezo1 and BK channels in vascular smooth muscle cells. 血管平滑肌细胞中 Piezo1 和 BK 通道之间的新联系
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-08-01 DOI: 10.1007/s00424-024-03001-3
Luigi Catacuzzeno, Antonio Michelucci
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引用次数: 0
Impact of lengthening velocity on the generation of eccentric force by slow-twitch muscle fibers in long stretches. 拉伸速度对慢速肌纤维在长距离拉伸中产生偏心力的影响。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-24 DOI: 10.1007/s00424-024-02991-4
Sven Weidner, André Tomalka, Christian Rode, Tobias Siebert

After an initial increase, isovelocity elongation of a muscle fiber can lead to diminishing (referred to as Give in the literature) and subsequently increasing force. How the stretch velocity affects this behavior in slow-twitch fibers remains largely unexplored. Here, we stretched fully activated individual rat soleus muscle fibers from 0.85 to 1.3 optimal fiber length at stretch velocities of 0.01, 0.1, and 1 maximum shortening velocity, vmax, and compared the results with those of rat EDL fast-twitch fibers obtained in similar experimental conditions. In soleus muscle fibers, Give was 7%, 18%, and 44% of maximum isometric force for 0.01, 0.1, and 1 vmax, respectively. As in EDL fibers, the force increased nearly linearly in the second half of the stretch, although the number of crossbridges decreased, and its slope increased with stretch velocity. Our findings are consistent with the concept of a forceful detachment and subsequent crossbridge reattachment in the stretch's first phase and a strong viscoelastic titin contribution to fiber force in the second phase of the stretch. Interestingly, we found interaction effects of stretch velocity and fiber type on force parameters in both stretch phases, hinting at fiber type-specific differences in crossbridge and titin contributions to eccentric force. Whether fiber type-specific combined XB and non-XB models can explain these effects or if they hint at some not fully understood properties of muscle contraction remains to be shown. These results may stimulate new optimization perspectives in sports training and provide a better understanding of structure-function relations of muscle proteins.

肌肉纤维的等速伸长在最初增加后,会导致力量减弱(文献中称为 "给力"),随后又会增加。拉伸速度如何影响慢速肌纤维的这种行为在很大程度上仍未得到研究。在这里,我们以 0.01、0.1 和 1 最大缩短速度 vmax 的拉伸速度,将完全激活的大鼠比目鱼肌纤维从 0.85 最佳纤维长度拉伸到 1.3 最佳纤维长度,并将结果与大鼠 EDL 快速肌纤维在类似实验条件下获得的结果进行了比较。在比目鱼肌纤维中,当最大缩短速度为 0.01、0.1 和 1 时,给力分别为最大等长力的 7%、18% 和 44%。与比目鱼肌纤维一样,虽然横桥数量减少,但在拉伸的后半段,肌力几乎呈线性增长,其斜率随拉伸速度而增加。我们的研究结果与以下概念一致:在拉伸的第一阶段,交桥发生强力分离并随后重新连接;在拉伸的第二阶段,粘弹性 titin 对纤维力的贡献很大。有趣的是,我们发现拉伸速度和纤维类型对两个拉伸阶段的力参数都有交互效应,这暗示了纤维类型在交桥和钛蛋白对偏心力的贡献方面存在特异性差异。纤维类型特异性的 XB 和非 XB 组合模型能否解释这些效应,或者它们是否暗示了肌肉收缩的某些尚未完全理解的特性,还有待进一步证明。这些结果可能会为运动训练带来新的优化视角,并使人们更好地理解肌肉蛋白的结构-功能关系。
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引用次数: 0
Galectin-3 protects distal convoluted tubules in rhabdomyolysis-induced kidney injury. 在横纹肌溶解引起的肾损伤中,Galectin-3 可保护远端曲小管。
IF 2.9 4区 医学 Q2 PHYSIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-23 DOI: 10.1007/s00424-024-02987-0
Vera A Kulow, Robert Labes, Claudia S Czopek, Christian Rosenberger, Michael Fähling

Advanced glycation endproducts (AGEs) contribute to cellular damage of various pathologies, including kidney diseases. Acute kidney injury (AKI) represents a syndrome seldom characterized by a single, distinct pathophysiological cause. Rhabdomyolysis-induced acute kidney injury (RIAKI) constitutes roughly 15% of AKI cases, yet its underlying pathophysiology remains poorly understood. Using a murine model of RIAKI induced by muscular glycerol injection, we observed elevated levels of AGEs and the AGE receptor galectin-3 (LGALS3) in the kidney. Immunofluorescence localized LGALS3 to distal nephron segments. According to transcriptomic profiling via next-generation sequencing, RIAKI led to profound changes in kidney metabolism, oxidative stress, and inflammation. Cellular stress was evident in both proximal and distal tubules, as shown by kidney injury markers KIM-1 and NGAL. However, only proximal tubules exhibited overt damage and apoptosis, as detected by routine morphology, active Caspase-3, and TUNEL assay, respectively. In vitro, distal convoluted tubule (DCT) cells challenged with AGEs underwent apoptosis, which was markedly enhanced by Lgals3 siRNA treatment. Thus, in RIAKI, the upregulation of LGALS3 may protect the distal nephron from AGE-mediated damage, while proximal tubules lacking LGALS3 stay at risk. Thus, stimulating LGALS3 in the proximal nephron, if achievable, may attenuate RIAKI.

高级糖化终产物(AGEs)会导致包括肾脏疾病在内的各种病症的细胞损伤。急性肾损伤(AKI)是一种很少以单一、独特的病理生理原因为特征的综合征。横纹肌溶解诱发的急性肾损伤(RIAKI)约占急性肾损伤病例的 15%,但人们对其潜在的病理生理学仍知之甚少。利用肌肉注射甘油诱导的小鼠 RIAKI 模型,我们观察到肾脏中 AGEs 和 AGE 受体 galectin-3 (LGALS3) 水平升高。免疫荧光将 LGALS3 定位于远端肾小球节段。根据新一代测序的转录组分析,RIAKI导致肾脏代谢、氧化应激和炎症发生了深刻变化。肾损伤标志物KIM-1和NGAL显示,近端和远端肾小管都存在明显的细胞压力。然而,只有近端肾小管表现出明显的损伤和凋亡,分别由常规形态学、活性 Caspase-3 和 TUNEL 试验检测到。在体外,受到 AGEs 挑战的远端曲细管(DCT)细胞会发生凋亡,而 Lgals3 siRNA 处理会显著增强凋亡。因此,在 RIAKI 中,LGALS3 的上调可能会保护远端肾小管免受 AGE 介导的损伤,而缺乏 LGALS3 的近端肾小管则处于危险之中。因此,如果能刺激近端肾小管中的 LGALS3,可能会减轻 RIAKI。
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引用次数: 0
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Pflugers Archiv : European journal of physiology
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