首页 > 最新文献

Journal of Japanese Society for Extremophiles最新文献

英文 中文
Occurrence of Extreme Thermophiles, Thermaerobacter spp., in Sewage Sludge 极端嗜热菌热杆菌在污水污泥中的出现
Pub Date : 2010-12-01 DOI: 10.3118/JJSE.9.67
Kota Shiotsuka, A. Tanaka, K. Sakai
We isolated an extreme thermophilic bacterium strain SS, which grew between 55 and 82°C (optimum 70°C), from sewage sludge in Kagoshima City, Japan. Morphological and physiological properties, as well as 16S rRNA gene sequence indicated that strain SS belongs to the genus Thermaerobacter. To confirm the distribution of Thermaerobacter spp. in sewage sludge, genus-specific detection by nested PCR of 16S rRNA gene was performed. As a result, the existence of Thermaerobacter spp. in six sewage sludge samples including composted sludge was demonstrated by sequencing of the nested PCR products. However, enrichment cultures with sewage sludge were needed to detect the target products, indicating that population of Thermaerobacter spp. may be significantly low. As far as we know, this is the first report on occurrence of extreme thermophilic bacteria in a municipal wastewater treatment process under mesophilic condition.
我们从日本鹿儿岛市的污水污泥中分离出一株生长在55 ~ 82°C(最适70°C)之间的极端嗜热细菌菌株SS。形态学和生理特性以及16S rRNA基因序列表明,菌株SS属于热杆菌属。为确定热杆菌在污水污泥中的分布,采用巢式PCR法对16S rRNA基因进行属特异性检测。结果,通过巢式PCR产物的测序,证实了热杆菌在包括堆肥污泥在内的6个污水污泥样品中的存在。然而,需要用污水污泥富集培养来检测目标产物,这表明热杆菌的数量可能非常低。据我们所知,这是第一次报道在中温条件下城市污水处理过程中出现极端嗜热细菌。
{"title":"Occurrence of Extreme Thermophiles, Thermaerobacter spp., in Sewage Sludge","authors":"Kota Shiotsuka, A. Tanaka, K. Sakai","doi":"10.3118/JJSE.9.67","DOIUrl":"https://doi.org/10.3118/JJSE.9.67","url":null,"abstract":"We isolated an extreme thermophilic bacterium strain SS, which grew between 55 and 82°C (optimum 70°C), from sewage sludge in Kagoshima City, Japan. Morphological and physiological properties, as well as 16S rRNA gene sequence indicated that strain SS belongs to the genus Thermaerobacter. To confirm the distribution of Thermaerobacter spp. in sewage sludge, genus-specific detection by nested PCR of 16S rRNA gene was performed. As a result, the existence of Thermaerobacter spp. in six sewage sludge samples including composted sludge was demonstrated by sequencing of the nested PCR products. However, enrichment cultures with sewage sludge were needed to detect the target products, indicating that population of Thermaerobacter spp. may be significantly low. As far as we know, this is the first report on occurrence of extreme thermophilic bacteria in a municipal wastewater treatment process under mesophilic condition.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"166 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123295159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
「好鹽菌」、「嗜?菌」から「好嗜塩菌」へ 从“嗜盐菌”到“嗜盐菌”
Pub Date : 2010-12-01 DOI: 10.3118/JJSE.9.57
正博 亀倉
{"title":"「好鹽菌」、「嗜?菌」から「好嗜塩菌」へ","authors":"正博 亀倉","doi":"10.3118/JJSE.9.57","DOIUrl":"https://doi.org/10.3118/JJSE.9.57","url":null,"abstract":"","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115587277","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of a Haloarchaeal GH Family 18 Chitinase with Additional Acidic Amino Acids on Its Protein Surface 盐古菌GH家族18几丁质酶蛋白表面附加酸性氨基酸的特性研究
Pub Date : 2010-12-01 DOI: 10.3118/JJSE.9.72
Y. Zhang, R. An, R. Yatsunami, M. Sato, K. Orishimo, Y. Hatori, T. Fukui, Satoshi Nakamura
A chitinase (ChiN1) from Halobacterium salinarum NRC-1 belongs to the glycoside hydrolase family 18. According to the three-dimensional structure model of ChiN1, Asn239 and Gln242 on a small helix between Phe237 and Arg247 were targeted for mutagenesis. Mutants N239D (Asn239 was replaced by Asp) and Q242E (Gln242 was replaced by Glu) were expressed in Haloarcula japonica and then characterized. Characterization of the mutants revealed that halotolerancy could be improved by introducing an acidic amino acid on the surface of ChiN1.
来自盐盐杆菌NRC-1的几丁质酶(ChiN1)属于糖苷水解酶家族18。根据ChiN1的三维结构模型,在Phe237和Arg247之间的一个小螺旋上的Asn239和Gln242被靶向诱变。突变体N239D (Asn239被Asp取代)和Q242E (Gln242被Glu取代)在Haloarcula japonica中表达并被鉴定。突变体的特性表明,在ChiN1表面引入酸性氨基酸可以提高其耐盐性。
{"title":"Characterization of a Haloarchaeal GH Family 18 Chitinase with Additional Acidic Amino Acids on Its Protein Surface","authors":"Y. Zhang, R. An, R. Yatsunami, M. Sato, K. Orishimo, Y. Hatori, T. Fukui, Satoshi Nakamura","doi":"10.3118/JJSE.9.72","DOIUrl":"https://doi.org/10.3118/JJSE.9.72","url":null,"abstract":"A chitinase (ChiN1) from Halobacterium salinarum NRC-1 belongs to the glycoside hydrolase family 18. According to the three-dimensional structure model of ChiN1, Asn239 and Gln242 on a small helix between Phe237 and Arg247 were targeted for mutagenesis. Mutants N239D (Asn239 was replaced by Asp) and Q242E (Gln242 was replaced by Glu) were expressed in Haloarcula japonica and then characterized. Characterization of the mutants revealed that halotolerancy could be improved by introducing an acidic amino acid on the surface of ChiN1.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130114561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
A tertiary-branched tetra-amine, N4-aminopropylspermidine is a major cellular polyamine in an anaerobic thermophile, Caldisericum exile belonging to a new bacterial phylum, Caldiserica 三支四胺n4 -氨基丙基亚精胺是一种厌氧性嗜热菌Caldiserica的主要细胞多胺,属于一个新的细菌门Caldiserica
Pub Date : 2010-12-01 DOI: 10.3118/JJSE.9.75
K. Hamana, H. Hayashi, M. Niitsu
Acid-extractable cellular polyamines of thermophilic Caldisericum exile belonging to a new bacterial phylum, Caldiserica were analyzed by HPLC and GC. The coexistence of an unusual tertiary brancehed tetra-amine, N4-aminopropylspermidine with spermine, a linear tetra-amine, as the major polyamines in addition to putrescine and spermidine, is first reported in the moderate thermophile isolated from a terrestrial hot spring in Japan. Linear and branched penta-amines were not detected. The novel cellular polyamine profile found in the moderate thermophile has never been observed within various bacteria and archaea previously analyzed.
采用高效液相色谱法和气相色谱法分析了新细菌门——嗜热性热释钙菌的细胞多胺含量。除腐胺和亚精胺外,一种不寻常的叔支四胺n4 -氨丙基亚精胺与一种线性四胺精胺共存,这是日本陆地温泉中分离的中等嗜热菌的主要多胺。未检出线性和支链五胺。在中等嗜热菌中发现的新细胞多胺谱从未在先前分析的各种细菌和古细菌中观察到。
{"title":"A tertiary-branched tetra-amine, N4-aminopropylspermidine is a major cellular polyamine in an anaerobic thermophile, Caldisericum exile belonging to a new bacterial phylum, Caldiserica","authors":"K. Hamana, H. Hayashi, M. Niitsu","doi":"10.3118/JJSE.9.75","DOIUrl":"https://doi.org/10.3118/JJSE.9.75","url":null,"abstract":"Acid-extractable cellular polyamines of thermophilic Caldisericum exile belonging to a new bacterial phylum, Caldiserica were analyzed by HPLC and GC. The coexistence of an unusual tertiary brancehed tetra-amine, N4-aminopropylspermidine with spermine, a linear tetra-amine, as the major polyamines in addition to putrescine and spermidine, is first reported in the moderate thermophile isolated from a terrestrial hot spring in Japan. Linear and branched penta-amines were not detected. The novel cellular polyamine profile found in the moderate thermophile has never been observed within various bacteria and archaea previously analyzed.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124039958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Dissimilatory Fe (III) reduction by cytochrome c-552 in a thermophilic, obligately chemolithoautotrophic bacterium, Hydrogenobacter thermophilus TK-6 嗜热嗜热氢杆菌TK-6中细胞色素c-552对Fe (III)的异化还原
Pub Date : 2010-12-01 DOI: 10.3118/JJSE.9.61
N. Yoshida, N. Ohmura, N. Matsumoto, K. Sasaki, H. Saiki, H. Arai, M. Ishii, Y. Igarashi
A thermophilic, obligately chemolithoauto- trophic H2-oxidizing bacterium, Hydrogenobacter thermophilus TK-6 can utilize O2 or NO3- as an electron acceptor. Here we show that this bacterium can grow autotrophically by the reduction of Fe(III)-EDTA or Fe(III)-DTPA (diethylene-triamine-pentaacetic acid) as an electron acceptor, through oxidation of H2 as an electron donor. A 7.6 kDa c-type cytochrome was purified from soluble fraction as the iron reducing protein and the protein was identified as cytochrome c-552. A rate constant for the reduction of Fe(III)-EDTA by the cytochrome was kinetically determined to be 1.73 x 107 s-1 by stopped-flow spectrophotometry, which is more than 20-fold higher than the constants of other iron reductases. The redox potential was measured as E = +0.27 V (vs NHE [Normal Hydrogen Electrode]), which is high enough to reduce Fe(III)-EDTA. These results suggest that cytochrome c-552 works as a terminal electron donor for Fe(III) in the periplasmic space.
嗜热氢杆菌TK-6是一种嗜热、专性化能自养的h2氧化细菌,它可以利用O2或NO3-作为电子受体。在这里,我们证明了这种细菌可以通过Fe(III)-EDTA或Fe(III)-DTPA(二乙烯-三胺-五乙酸)作为电子受体的还原,通过H2作为电子供体的氧化来自养生长。从可溶性部分中纯化出7.6 kDa的c型细胞色素作为铁还原蛋白,鉴定为细胞色素c-552。用停流分光光度法测定了细胞色素还原Fe(III)-EDTA的速率常数为1.73 × 107 s-1,比其他铁还原酶的速率常数高20倍以上。测定的氧化还原电位为E = +0.27 V (vs NHE [Normal Hydrogen Electrode]),该电位足以还原Fe(III)-EDTA。这些结果表明细胞色素c-552作为铁(III)在质周空间的终端电子供体。
{"title":"Dissimilatory Fe (III) reduction by cytochrome c-552 in a thermophilic, obligately chemolithoautotrophic bacterium, Hydrogenobacter thermophilus TK-6","authors":"N. Yoshida, N. Ohmura, N. Matsumoto, K. Sasaki, H. Saiki, H. Arai, M. Ishii, Y. Igarashi","doi":"10.3118/JJSE.9.61","DOIUrl":"https://doi.org/10.3118/JJSE.9.61","url":null,"abstract":"A thermophilic, obligately chemolithoauto- trophic H2-oxidizing bacterium, Hydrogenobacter thermophilus TK-6 can utilize O2 or NO3- as an electron acceptor. Here we show that this bacterium can grow autotrophically by the reduction of Fe(III)-EDTA or Fe(III)-DTPA (diethylene-triamine-pentaacetic acid) as an electron acceptor, through oxidation of H2 as an electron donor. A 7.6 kDa c-type cytochrome was purified from soluble fraction as the iron reducing protein and the protein was identified as cytochrome c-552. A rate constant for the reduction of Fe(III)-EDTA by the cytochrome was kinetically determined to be 1.73 x 107 s-1 by stopped-flow spectrophotometry, which is more than 20-fold higher than the constants of other iron reductases. The redox potential was measured as E = +0.27 V (vs NHE [Normal Hydrogen Electrode]), which is high enough to reduce Fe(III)-EDTA. These results suggest that cytochrome c-552 works as a terminal electron donor for Fe(III) in the periplasmic space.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124017843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The tardigrade Ramazzottius varieornatus as a model of extremotolerant animals 作为极端耐受性动物模型的缓步动物
Pub Date : 1900-01-01 DOI: 10.3118/JJSE.7.2.25
D. Horikawa
I report the successful culture of the tardigrade Ramazzottius varieornatus by supplying the green alga Chlorella vulgaris as a food. A standard strain named YOKOZUNA-1 has been isolated from single egg of R. varieornatus. The reared animals have anhydrobiotic ability throughout their life cycle in eggs, juveniles, and adults. Body water content of adult R. varieornatus drops from 78.6% wt./wt. in hydrated state to 2.5% wt./wt. in anhydrobiotic state. Reared adults, while in an anhydrobiotic state, are tolerant of exposure to 100°C, 1 GPa, 99.8% acetonitrile, and 5000 Gy of 4He ions. Furthermore, hydrated active adults survive freezing at -2 to -20°C at a cooling rate of 1°C/min. Based on useful culture systems and extraordinary tolerance to extreme environmental conditions of R. varieornatus, this species is expected to be a suitable model for extremophile research focusing on multicellular organisms.
我报告了用普通小球藻作为食物成功地培养了缓步动物变种小球藻。从异角田鼠卵中分离出一株标准菌株YOKOZUNA-1。饲养的动物在其卵、幼崽和成虫的整个生命周期中都具有无水能力。成鼠体含水量从78.6% wt./wt下降。在水合状态下至2.5%重量/重量。处于无水状态。在无水状态下饲养的成虫可耐受100°C、1 GPa、99.8%乙腈和5000 Gy的4He离子。此外,在1°C/min的冷却速率下,水合活性成虫在-2至-20°C的冷冻条件下存活。基于varieornatus有用的培养体系和对极端环境条件的非凡耐受性,该物种有望成为以多细胞生物为重点的极端微生物研究的合适模型。
{"title":"The tardigrade Ramazzottius varieornatus as a model of extremotolerant animals","authors":"D. Horikawa","doi":"10.3118/JJSE.7.2.25","DOIUrl":"https://doi.org/10.3118/JJSE.7.2.25","url":null,"abstract":"I report the successful culture of the tardigrade Ramazzottius varieornatus by supplying the green alga Chlorella vulgaris as a food. A standard strain named YOKOZUNA-1 has been isolated from single egg of R. varieornatus. The reared animals have anhydrobiotic ability throughout their life cycle in eggs, juveniles, and adults. Body water content of adult R. varieornatus drops from 78.6% wt./wt. in hydrated state to 2.5% wt./wt. in anhydrobiotic state. Reared adults, while in an anhydrobiotic state, are tolerant of exposure to 100°C, 1 GPa, 99.8% acetonitrile, and 5000 Gy of 4He ions. Furthermore, hydrated active adults survive freezing at -2 to -20°C at a cooling rate of 1°C/min. Based on useful culture systems and extraordinary tolerance to extreme environmental conditions of R. varieornatus, this species is expected to be a suitable model for extremophile research focusing on multicellular organisms.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131287847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Phylogenetic analysis of pectin degrading yeasts from deep-sea environments 深海环境中果胶降解酵母的系统发育分析
Pub Date : 1900-01-01 DOI: 10.3118/JJSE.5.21
H. Minegishi, Takeshi Miura, Yasuhiko Yoshida, R. Usami, F. Abe
Deep-sea yeast strains were isolated from mud samples collected in Sagami Bay (1,100-1,400 m) and the Japan Trench (4,500-6,500 m). All of the 46 yeast isolates were capable of growth at 24°C and atmospheric pressure, suggesting that these strains might originate neritic regions or land but survived in deep sea. Based on sequencing of 26S rRNA gene, 15 strains were classified into basidiomycetous yeasts including Cryptococcus liquefaciens, Kondoa aeria, Rhodosporidium diobovatum, Rhodosporidium sphaerocarpum, Rhodotorula mucilaginosa, Rhodotorula dairenensis and Rhodotorula slooffiae, and 8 strains were classified into ascomycetous yeasts including Aureobasidium pullulans, Candida zeylanoides, Kluyveromyces nonfermentans, Metschnikowia bicuspidate and Williopsis saturnus. Screening of the 46 isolates appeared to yield a high frequency of polygalacturonase (PGase) producers capable of degrading pectin. We suggest that deep-sea yeasts are new sources of PGase producers.
从相模湾(1,100-1,400 m)和日本海沟(4,500-6,500 m)的泥样中分离得到的46株深海酵母菌株均能在24°C和常压下生长,表明这些菌株可能起源于浅海地区或陆地,但在深海中存活。根据26S rRNA基因测序结果,将15株菌株归为担子菌酵母菌,包括液化隐球菌、空Kondoa aeria、薯蓣红孢子虫、球形红孢子虫、粘胶红孢子虫、dairen红孢子虫和sllooffiae红孢子虫;将8株菌株归为子囊菌酵母菌,包括普鲁兰金黄色葡萄球菌、zeylanoides假丝酵母、非发酵克鲁维菌、双穗芽胞菌和saturnus。46株分离株的筛选似乎产生了高频率的能够降解果胶的聚半乳糖醛酸酶(PGase)生产者。我们认为深海酵母是PGase的新来源。
{"title":"Phylogenetic analysis of pectin degrading yeasts from deep-sea environments","authors":"H. Minegishi, Takeshi Miura, Yasuhiko Yoshida, R. Usami, F. Abe","doi":"10.3118/JJSE.5.21","DOIUrl":"https://doi.org/10.3118/JJSE.5.21","url":null,"abstract":"Deep-sea yeast strains were isolated from mud samples collected in Sagami Bay (1,100-1,400 m) and the Japan Trench (4,500-6,500 m). All of the 46 yeast isolates were capable of growth at 24°C and atmospheric pressure, suggesting that these strains might originate neritic regions or land but survived in deep sea. Based on sequencing of 26S rRNA gene, 15 strains were classified into basidiomycetous yeasts including Cryptococcus liquefaciens, Kondoa aeria, Rhodosporidium diobovatum, Rhodosporidium sphaerocarpum, Rhodotorula mucilaginosa, Rhodotorula dairenensis and Rhodotorula slooffiae, and 8 strains were classified into ascomycetous yeasts including Aureobasidium pullulans, Candida zeylanoides, Kluyveromyces nonfermentans, Metschnikowia bicuspidate and Williopsis saturnus. Screening of the 46 isolates appeared to yield a high frequency of polygalacturonase (PGase) producers capable of degrading pectin. We suggest that deep-sea yeasts are new sources of PGase producers.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"240 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114337002","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Polyamine analysis of methanogens, thermophiles and extreme halophiles belonging to the domain Archaea 古菌领域产甲烷菌、嗜热菌和极端嗜盐菌的多胺分析
Pub Date : 1900-01-01 DOI: 10.3118/JJSE.6.25
K. Hamana, Ryuichi Hosoya, T. Itoh
Cellular polyamines of 61 archaeal newly published strains were analyzed by HPLC to evaluate correlation of polyamine profiles to their extremophily and chemotaxonomy. A quaternary branched penta-amine, N4-bis( aminopropyl )spermidine, was found in hyperthermophilic Methanocaldococcus and Methanotorris belonging to the family Methanocaldococcaceae but not in the family Methanococcaceae nor any other methanogenic archaeal orders. Hyperthermophilic / extremely thermophilic Palaeococcus, Thermococcus and Pyrococcus of the order Thermococcales ubiquitously contained the branched penta-amine. Mesophilic, extreme halophiles including halo-alkaliphiles, belonging to the order Halobacteriales, contained a trace of spermidine, spermine and agmatine. In the phylum Crenarchaeota, extremely thermophilic Caldisphaera of the provisional order 'Caldisphaerales' contained norspermidine, spermidine and agmatine, and hyperthermophilic Pyrobaculum belonging to the order Thermoproteales contained norspermidine, spermidine, norspermine and spermine, but not any penta-amines. Within the order Desulfurococcales, Desulfurococcus and Ignisphaera contained spermidine, norspermidine, homospermidine, norspermine and spermine, whereas Aeropyrum contained caldopentamine and thermopentamine in addition to these triamines and tetra-amines.
采用高效液相色谱法对61株新发现的古细菌细胞多胺进行了分析,以评价多胺谱与其极端微生物和化学分类的相关性。在Methanocaldococcus和Methanotorris属于Methanocaldococcaceae,但在Methanococcaceae和任何其他产甲烷古菌目中均未发现季支五胺N4-bis(氨丙基)亚精胺。热球菌目的超嗜热/极嗜热古球菌、热球菌和焦球菌普遍含有支链五胺。中温、极端嗜盐菌,包括嗜碱菌,属于盐杆菌目,含有微量亚精胺、精胺和精氨酸。在绿原门中,临时目“Caldisphaerales”的极端嗜热的Caldisphaera含有去亚精胺、亚精胺和胍丁胺,而属于热蛋白酶目的超嗜热的Pyrobaculum含有去亚精胺、亚精胺、去精胺和精胺,但不含任何五胺。在Desulfurococcales目中,Desulfurococcus和Ignisphaera含有亚精胺、去亚精胺、同亚精胺、去精胺和精胺,而Aeropyrum除了这些三胺和四胺外还含有钙多巴胺和热敏多巴胺。
{"title":"Polyamine analysis of methanogens, thermophiles and extreme halophiles belonging to the domain Archaea","authors":"K. Hamana, Ryuichi Hosoya, T. Itoh","doi":"10.3118/JJSE.6.25","DOIUrl":"https://doi.org/10.3118/JJSE.6.25","url":null,"abstract":"Cellular polyamines of 61 archaeal newly published strains were analyzed by HPLC to evaluate correlation of polyamine profiles to their extremophily and chemotaxonomy. A quaternary branched penta-amine, N4-bis( aminopropyl )spermidine, was found in hyperthermophilic Methanocaldococcus and Methanotorris belonging to the family Methanocaldococcaceae but not in the family Methanococcaceae nor any other methanogenic archaeal orders. Hyperthermophilic / extremely thermophilic Palaeococcus, Thermococcus and Pyrococcus of the order Thermococcales ubiquitously contained the branched penta-amine. Mesophilic, extreme halophiles including halo-alkaliphiles, belonging to the order Halobacteriales, contained a trace of spermidine, spermine and agmatine. In the phylum Crenarchaeota, extremely thermophilic Caldisphaera of the provisional order 'Caldisphaerales' contained norspermidine, spermidine and agmatine, and hyperthermophilic Pyrobaculum belonging to the order Thermoproteales contained norspermidine, spermidine, norspermine and spermine, but not any penta-amines. Within the order Desulfurococcales, Desulfurococcus and Ignisphaera contained spermidine, norspermidine, homospermidine, norspermine and spermine, whereas Aeropyrum contained caldopentamine and thermopentamine in addition to these triamines and tetra-amines.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125679001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Expression of Bacterial Genome under Soil Environment 土壤环境下细菌基因组的表达
Pub Date : 1900-01-01 DOI: 10.3118/JJSE.6.59
M. Tuda
様々な自然生態系から多種多様な生物現象を示す 微生物株が数多く分離され、先人たちは実験室で純 粋培養したこれら微生物をいろいろな角度から検討 することで、個々の生物機能の分子メカニズム、そ して、システムとしての細胞や同一株集団における 当該生物機能の発現様式の詳細を明らかにしてきた。 その一方で、物理的、化学的並びに生物学的に複雑 な環境要因の大規模な変動に曝される複合生物系の 自然生態系で、研究対象としてきた環境微生物が実 験室で純粋培養したときと同じような様式で生物機 能を発揮しているのかという、シンプルだが最も重 要な問題は手がつけられないでいた。この類の包括 的な研究は、微生物の持つ生物機能を人間が自然環 境で利用するバイオレメディエーションなどをはじ めとする応用分野において、とりわけ重要である。 そして、生物機能を直接支配する個々の特定遺伝子 の生態系での量的変動や発現などの記載が行われて きた結果、生態系での遺伝子発現は実験室系の単独 培養時の発現とは異なっていると提唱されるように なった。ただ、この提唱には曖昧なところがたいへ ん多く、この原因として、How とか Why という観 点での研究を展開するための手法が不備であったこ とがあげられる。一方、動植物病原細菌を扱う研究 者は 1990 年代より、感染モデル生物を「培養装置」 と見立て、この環境で菌の生存・増殖に必要な遺伝 子や特異的に発現する遺伝子をゲノムワイドに探 索・解析することで、病原細菌の「培養装置」での 「真の」生きざまを明らかにし、病原性発揮に直接 的並びに間接的に必要な遺伝子群の総合的理解を深 めてきた(1, 2)。このような方向性を持った研究は、 微生物ゲノムの全塩基配列決定が容易になるにつれ、 さらに進展している。他方、環境細菌においては、 土壌などの自然環境を「培養装置」と見立て、本環 境で生存・増殖に必要な遺伝子や特異的に発現する 遺伝子を探索・解析する研究がなかったが、この数 年の間に自然環境での微生物の特定遺伝子やゲノム 全体の発現を解析する手法が急速に確立されてきた (3)。本稿では、土壌環境で実際に機能している遺伝 子をどのように検索・解析するかについて、我々の 最近の研究例(4)を簡単に紹介する。
从各种各样的自然生态系统中分离出许多表现出各种各样的生物现象的微生物株,先人们从各种各样的角度对在实验室纯培养的这些微生物进行了探讨,通过研究各个生物功能的分子机制,并且,明确了作为系统的细胞和同一株集团的该生物功能的表达方式的详细情况。另一方面,在物理的,化学的,生物学的复杂的环境因素的大规模的变动暴露的复合生物系的自然生态系,作为研究对象的环境微生物在实验室纯粹培养的时候以同样的方式生物机。有没有发挥能力,这个简单却最重要的问题,他没有着手。这一类的概括性的研究,在人类在自然环境中利用微生物的生物功能的生物研究等为首的应用领域,是特别重要的。并且,对直接支配生物功能的个别特定基因在生态系统中的量的变动和表现等进行记载的结果,提出了生态系统中的基因表现与实验室系统单独培养时的表现不同。但是,这个提倡有很多不明确的地方,究其原因,从How和Why的角度来展开研究的方法不够完善。另一方面,研究动植物病原细菌的研究者从20世纪90年代开始,将感染模式生物比作“培养装置”,在这个环境中寻找细菌生存、增殖所需的遗传因子和特异性表现的基因。通过索解析,明确了病原细菌在“培养装置”中的“真正”生存方式,加深了对病原性发挥直接和间接必要的基因群的综合理解(1,2)。随着微生物基因组的全碱基测序变得越来越容易,这种方向性的研究正在得到进一步的发展。另一方面,在环境细菌中,虽然没有将土壤等自然环境当作“培养装置”,在本环境中探索和解析生存、增殖所需的基因和特异性表现的基因的研究,但是这个数量年间,分析自然环境中微生物的特定基因和基因组整体表现的方法迅速得到确立(3)。本文就如何检索和解析在土壤环境中实际发挥作用的遗传子,简单介绍我们最近的研究实例(4)。
{"title":"Expression of Bacterial Genome under Soil Environment","authors":"M. Tuda","doi":"10.3118/JJSE.6.59","DOIUrl":"https://doi.org/10.3118/JJSE.6.59","url":null,"abstract":"様々な自然生態系から多種多様な生物現象を示す 微生物株が数多く分離され、先人たちは実験室で純 粋培養したこれら微生物をいろいろな角度から検討 することで、個々の生物機能の分子メカニズム、そ して、システムとしての細胞や同一株集団における 当該生物機能の発現様式の詳細を明らかにしてきた。 その一方で、物理的、化学的並びに生物学的に複雑 な環境要因の大規模な変動に曝される複合生物系の 自然生態系で、研究対象としてきた環境微生物が実 験室で純粋培養したときと同じような様式で生物機 能を発揮しているのかという、シンプルだが最も重 要な問題は手がつけられないでいた。この類の包括 的な研究は、微生物の持つ生物機能を人間が自然環 境で利用するバイオレメディエーションなどをはじ めとする応用分野において、とりわけ重要である。 そして、生物機能を直接支配する個々の特定遺伝子 の生態系での量的変動や発現などの記載が行われて きた結果、生態系での遺伝子発現は実験室系の単独 培養時の発現とは異なっていると提唱されるように なった。ただ、この提唱には曖昧なところがたいへ ん多く、この原因として、How とか Why という観 点での研究を展開するための手法が不備であったこ とがあげられる。一方、動植物病原細菌を扱う研究 者は 1990 年代より、感染モデル生物を「培養装置」 と見立て、この環境で菌の生存・増殖に必要な遺伝 子や特異的に発現する遺伝子をゲノムワイドに探 索・解析することで、病原細菌の「培養装置」での 「真の」生きざまを明らかにし、病原性発揮に直接 的並びに間接的に必要な遺伝子群の総合的理解を深 めてきた(1, 2)。このような方向性を持った研究は、 微生物ゲノムの全塩基配列決定が容易になるにつれ、 さらに進展している。他方、環境細菌においては、 土壌などの自然環境を「培養装置」と見立て、本環 境で生存・増殖に必要な遺伝子や特異的に発現する 遺伝子を探索・解析する研究がなかったが、この数 年の間に自然環境での微生物の特定遺伝子やゲノム 全体の発現を解析する手法が急速に確立されてきた (3)。本稿では、土壌環境で実際に機能している遺伝 子をどのように検索・解析するかについて、我々の 最近の研究例(4)を簡単に紹介する。","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121622957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Distribution of long linear and branched polyamines in the thermophiles belonging to the domain Bacteria 属细菌域的嗜热菌中长线性和支化多胺的分布
Pub Date : 1900-01-01 DOI: 10.3118/JJSE.7.1.10
K. Hamana, Ryuichi Hosoya, A. Yokota, M. Niitsu, H. Hayashi, T. Itoh
Cellular polyamines of 44 newly validated eubacterial thermophiles growing at 45-80°C, belonging to eight orders (six phyla) of the domain Bacteria, were analyzed by HPLC and GC. A quaternary branched penta-amine, N4-bis(aminopropyl)norspermidine, was found in Hydrogenivirga and Sulfurihydrogenibium belonging to the order of Aquificales. Another quaternary branched penta-amine, N4-bis(aminopropyl) spermidine, was detected in Thermovibrio, Desulfurobacterium (Aquificales), Moorella, Desul-fovirgula (Thermoanaerobacteriales), Thermaerobacter (Clostridiales), Caldalkalibacillus, Thermobacillus (Bacillales), and Desulfothermus (Desulfovibrionales of the phylum Proteobacteria). The two branched penta- amines as well as linear penta- and hexa-amines were produced by Thermus species of the order Thermales. Marinitoga and Fervidobacterium (Thermotogales) contained linear penta-amines. The production of these long polyamines was dependent on culture temperature and remarkable at 70-80°C in the extreme/ hyper-thermophiles and to alkaline medium pH 8.5-9.0 in moderately thermophilic bacilli. The long polyamines were not detected in moderately thermophilic Anaerolinea (Anaerolineales of the phylum Chloroflexi). Distribution of either or both long linear polyamines and/or quaternary branched polyamines in the extreme/hyper-thermophiles is also reflected in their phylogenetical evolved locations.
采用高效液相色谱法和气相色谱法对生长在45 ~ 80℃环境下的44株嗜热真细菌进行了细胞多胺分析。一种季支化五胺,n4 -双(氨丙基)去亚精胺,在氢亚精目和硫酸氢亚精目中发现。在Thermovibrio、Desulfurobacterium (Aquificales)、Moorella、desulsofovirgula (thermoan厌氧细菌)、Thermaerobacter (Clostridiales)、Caldalkalibacillus、Thermobacillus (Bacillales)和Desulfothermus (Proteobacteria门Desulfovibrionales)中均检测到N4-bis(氨基丙基)亚精胺。两支五胺以及线性五胺和六胺是由热目热蝇种产生的。maritoga和Fervidobacterium (Thermotogales)含有线性五胺。这些长多胺的产生依赖于培养温度,在70-80°C的极端/超嗜热菌和在pH 8.5-9.0的碱性培养基中,中等嗜热杆菌的产量显著。在中度嗜热性厌氧菌(绿藻门厌氧菌)中未检测到长多胺。长线性多胺和/或季支多胺在极端/超嗜热生物中的分布也反映在它们的系统进化位置上。
{"title":"Distribution of long linear and branched polyamines in the thermophiles belonging to the domain Bacteria","authors":"K. Hamana, Ryuichi Hosoya, A. Yokota, M. Niitsu, H. Hayashi, T. Itoh","doi":"10.3118/JJSE.7.1.10","DOIUrl":"https://doi.org/10.3118/JJSE.7.1.10","url":null,"abstract":"Cellular polyamines of 44 newly validated eubacterial thermophiles growing at 45-80°C, belonging to eight orders (six phyla) of the domain Bacteria, were analyzed by HPLC and GC. A quaternary branched penta-amine, N4-bis(aminopropyl)norspermidine, was found in Hydrogenivirga and Sulfurihydrogenibium belonging to the order of Aquificales. Another quaternary branched penta-amine, N4-bis(aminopropyl) spermidine, was detected in Thermovibrio, Desulfurobacterium (Aquificales), Moorella, Desul-fovirgula (Thermoanaerobacteriales), Thermaerobacter (Clostridiales), Caldalkalibacillus, Thermobacillus (Bacillales), and Desulfothermus (Desulfovibrionales of the phylum Proteobacteria). The two branched penta- amines as well as linear penta- and hexa-amines were produced by Thermus species of the order Thermales. Marinitoga and Fervidobacterium (Thermotogales) contained linear penta-amines. The production of these long polyamines was dependent on culture temperature and remarkable at 70-80°C in the extreme/ hyper-thermophiles and to alkaline medium pH 8.5-9.0 in moderately thermophilic bacilli. The long polyamines were not detected in moderately thermophilic Anaerolinea (Anaerolineales of the phylum Chloroflexi). Distribution of either or both long linear polyamines and/or quaternary branched polyamines in the extreme/hyper-thermophiles is also reflected in their phylogenetical evolved locations.","PeriodicalId":204480,"journal":{"name":"Journal of Japanese Society for Extremophiles","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127822585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
期刊
Journal of Japanese Society for Extremophiles
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1