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The urea transporter (UT) family: bioinformatic analyses leading to structural, functional, and evolutionary predictions. 尿素转运体(UT)家族:结构、功能和进化预测的生物信息学分析。
Pub Date : 2003-01-01 DOI: 10.3109/714041015
Ranjeet Minocha, Keith Studley, Milton H Saier

We have identified all currently sequenced members of the urea transporter (UT) family (TC #1.A.28). Homologues occur exclusively in vertebrate animals and bacteria but not in other eukaryotic kingdoms or archaea. Sequence, structural, and phylogenetic analyses reveal conserved regions and residues and suggest that a primordial 5 transmembrane helical segment (TMS)-encoding genetic element duplicated to give a 10 TMS-encoding element early during evolutionary history, at about the time when eukaryotes diverged from prokaryotes. Two well-conserved, strongly amphipathic, putative alpha-helices that precede both 5 TMS repeat elements are predicted to be of structural, functional, or biogenic significance. A second duplication event (or a gene fusion event) occurred during development of the vertebrate lineage, giving rise to 20 TMS mammalian homologues. The results suggest that vertebrates acquired UT genetic information from bacteria only once and that all current orthologues and paralogues in the animal kingdom arose from this one primordial system.

我们已经确定了尿素转运体(UT)家族(TC #1.A.28)目前所有的测序成员。同源物只存在于脊椎动物和细菌中,而不存在于其他真核生物界或古细菌中。序列、结构和系统发育分析揭示了保守的区域和残基,并表明在进化史的早期,大约在真核生物从原核生物分化出来的时候,一个原始的 5 跨膜螺旋片段(TMS)编码基因元件发生了复制,产生了一个 10 TMS 编码元件。据预测,在这两个 5 TMS 重复元件之前的两个保存完好、具有强烈两性关系的假定α-螺旋具有结构、功能或生物起源意义。在脊椎动物的发育过程中发生了第二次复制事件(或基因融合事件),产生了 20 个 TMS 哺乳动物同源物。研究结果表明,脊椎动物只从细菌那里获得了一次UT遗传信息,目前动物界的所有同源物和旁系亲属都来自这一个原始系统。
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引用次数: 32
Pharmacological analysis of the contractile role of M2 and M3 muscarinic receptors in smooth muscle. 平滑肌中M2和M3毒蕈碱受体收缩作用的药理学分析。
Pub Date : 2003-01-01
Frederick J Ehlert

Muscarinic receptors expressed on smooth muscle cells are primarily of the M(2) and M(3) subtypes. The M(3) subtype triggers contraction through an interaction with G(q) proteins to stimulate phosphoinositide hydrolysis and mobilize Ca(2+). In contrast, activation of M(2) receptors modulates contraction by preventing relaxation or by potentiating M(3) receptor-mediated contractions, which enhances heterologous desensitization. These effects can be explained by the coupling of M(2) receptors to G(i) proteins that mediate an inhibition of adenylyl cyclase and calcium-activated potassium channels. The pharmacological antagonism of a response mediated through an interaction between M(2) and M(3) receptors has been shown to resemble the profile of the directly acting receptor (M(3)), primarily, and not that of the conditional receptor (M(2)). Evidence for a contractile role of the M(2) receptor has been obtained by inactivating its signaling pathway with pertussis toxin or by measuring contractile effects of muscarinic agonists after M(3) receptors have been covalently inactivated. Under these conditions, M(2) receptors have been shown to mediate an inhibition of the relaxant effects of agents, like isoproterenol, on the contractile effects of nonmuscarinic spasmogens. Muscarinic M(2) and M(3) receptor knockout mice are useful tools for exploring interactions between these receptors in smooth muscle.

在平滑肌细胞上表达的毒蕈碱受体主要是M(2)和M(3)亚型。M(3)亚型通过与G(q)蛋白相互作用触发收缩,刺激磷酸肌苷水解并调动Ca(2+)。相反,M(2)受体的激活通过阻止松弛或增强M(3)受体介导的收缩来调节收缩,从而增强异源脱敏。这些效应可以通过M(2)受体与G(i)蛋白的偶联来解释,G(i)蛋白介导腺苷酸环化酶和钙活化钾通道的抑制。通过M(2)和M(3)受体之间的相互作用介导的反应的药理学拮抗作用已被证明主要类似于直接作用受体(M(3))的概况,而不是条件受体(M(2))。通过百日咳毒素灭活M(2)受体的信号通路,或在M(3)受体共价灭活后测量毒蕈碱激动剂的收缩作用,已经获得了M(2)受体收缩作用的证据。在这些条件下,M(2)受体已被证明可以介导诸如异丙肾上腺素等药物对非毒蕈性痉挛原的收缩作用的松弛作用的抑制。毒蕈碱M(2)和M(3)受体敲除小鼠是探索平滑肌中这些受体之间相互作用的有用工具。
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引用次数: 0
Activity, regulation, and intracellular localization of RGS proteins. RGS蛋白的活性、调控和细胞内定位。
Pub Date : 2003-01-01 DOI: 10.3109/10606820308244
P. Chidiac, A. A. Roy
RGS proteins attenuate the activities of heterotrimeric G proteins largely by promoting the hydrolysis of the activating nucleotide GTP. This review discusses the interactions of RGS proteins and G proteins and how those interactions are regulated by a variety of factors including auxiliary proteins and other cellular constituents, posttranslational modifications, and intracellular localization patterns. In addition, we discuss progress that has been made toward understanding the roles that RGS proteins play in vivo, and how they may serve to govern responses to G protein-coupled receptors upon acute and prolonged activation by agonists.
RGS蛋白主要通过促进活化核苷酸GTP的水解来减弱异三聚体G蛋白的活性。本文讨论了RGS蛋白和G蛋白的相互作用,以及这些相互作用如何受到多种因素的调节,包括辅助蛋白和其他细胞成分、翻译后修饰和细胞内定位模式。此外,我们还讨论了在了解RGS蛋白在体内发挥的作用方面取得的进展,以及它们如何在激动剂的急性和长期激活下控制对G蛋白偶联受体的反应。
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引用次数: 54
Protein complexes involved in heptahelical receptor-mediated signal transduction. 参与七螺旋受体介导的信号转导的蛋白质复合物。
Pub Date : 2003-01-01
R Victor Rebois, Terence E Hébert

Signal transduction mediated by heterotrimeric G proteins that couple to heptahelical receptors requires the involvement of many different proteins. Although some of the early evidence suggested that signal transduction components were assembled into complexes, much of the data supported an alternative hypothesis positing that the process involved transient interactions driven by random collision events. However, recent data indicate that many of the components involved in signal transduction do indeed form complexes. Here we review the evidence for these complexes and how they contribute to the specificity and efficiency of signaling in cells that must manage numerous signal transduction pathways.

异三聚体G蛋白偶联七螺旋受体介导的信号转导需要许多不同蛋白的参与。尽管一些早期证据表明信号转导成分被组装成复合物,但大部分数据支持另一种假设,即该过程涉及随机碰撞事件驱动的瞬态相互作用。然而,最近的数据表明,参与信号转导的许多成分确实形成复合物。在这里,我们回顾了这些复合物的证据,以及它们如何在必须管理众多信号转导途径的细胞中促进信号的特异性和效率。
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引用次数: 0
Introduction: an evolution of electrophysiology. 导言:电生理学的进化。
Pub Date : 2003-01-01
Jennings Worley
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引用次数: 0
Application of the Cytosensor microphysiometer to drug discovery. 细胞传感器微生理仪在药物发现中的应用。
Pub Date : 2003-01-01
Kirsten Wille, Lisa A Paige, Alan J Higgins

The Cytosensor microphysiometer uses silicon chip technology to correlate changes in extracellular acidification rates with quantitative changes in cellular metabolism in response to ligand binding to surface receptors. This functional measure of physiology makes the Cytosensor a valuable tool in drug discovery research by allowing application of the instrument to screening of prospective pharmacologically active agents, characterizations of dose responses and structure-activity relationships, and investigation of mechanisms of action.

细胞传感器微生理仪使用硅芯片技术,将细胞外酸化率的变化与响应配体与表面受体结合的细胞代谢的定量变化联系起来。这种生理功能测量使细胞传感器成为药物发现研究中的一个有价值的工具,允许应用该仪器筛选潜在的药理活性药物,描述剂量反应和构效关系,以及研究作用机制。
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引用次数: 0
Accessory proteins for G protein-signaling systems: activators of G protein signaling and other nonreceptor proteins influencing the activation state of G proteins. G蛋白信号系统的辅助蛋白:G蛋白信号的激活因子和其他影响G蛋白激活状态的非受体蛋白。
Pub Date : 2003-01-01 DOI: 10.1080/10606820308240
J. Blumer, S. Lanier
Heterotrimeric G proteins are key transducers for signal transfer from outside of the cell. In addition to their regulation by the superfamily of G protein-coupled receptors, many if not all of the subtypes of heterotrimeric G proteins are also regulated by additional accessory proteins that influence guanine nucleotide binding and/or hydrolysis or subunit interactions. Activators of G protein signaling (AGS1-3) refer to a functionally defined group of proteins that activate G protein-signaling systems in the absence of a classical G protein-coupled receptor. AGS and related proteins provide unexpected insights into the regulation of the G protein activation/deactivation cycle and the functional roles of G proteins. These proteins likely play important roles in the generation of signaling complexes, the positioning of signaling proteins within the cell, and in biological roles of G proteins unrelated to a cell surface receptor. As such, these proteins and the concepts advanced with their discovery provide unexpected avenues for therapeutics and understanding disease mechanisms.
异源三聚体G蛋白是细胞外信号传递的关键换能器。除了G蛋白偶联受体超家族的调控外,许多异源三聚体G蛋白的亚型(如果不是全部的话)还受到影响鸟嘌呤核苷酸结合和/或水解或亚基相互作用的附加蛋白的调控。G蛋白信号激活因子(Activators of G protein signaling, AGS1-3)是指在缺乏经典G蛋白偶联受体的情况下激活G蛋白信号系统的一组功能明确的蛋白。AGS和相关蛋白为G蛋白激活/失活周期的调控和G蛋白的功能作用提供了意想不到的见解。这些蛋白可能在信号复合物的产生、信号蛋白在细胞内的定位以及与细胞表面受体无关的G蛋白的生物学作用中发挥重要作用。因此,这些蛋白质和随着它们的发现而提出的概念为治疗和理解疾病机制提供了意想不到的途径。
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引用次数: 39
Upscaling and automation of electrophysiology: toward high throughput screening in ion channel drug discovery. 电生理学的升级和自动化:迈向离子通道药物发现的高通量筛选。
Pub Date : 2003-01-01 DOI: 10.3109/10606820308258
M. Asmild, Nicholas Oswald, K. Krzywkowski, S. Friis, R. B. Jacobsen, Dirk Reuter, R. Taboryski, Jonathan Kutchinsky, R. Vestergaard, R. L. Schrøder, C. Sørensen, M. Bech, Mads P. G. Korsgaard, N. Willumsen
Effective screening of large compound libraries in ion channel drug discovery requires the development of new electrophysiological techniques with substantially increased throughputs compared to the conventional patch clamp technique. Sophion Bioscience is aiming to meet this challenge by developing two lines of automated patch clamp products, a traditional pipette-based system called Apatchi-1, and a silicon chip-based system QPatch. The degree of automation spans from semi-automation (Apatchi-1) where a trained technician interacts with the system in a limited way, to a complete automation (QPatch 96) where the system works continuously and unattended until screening of a full compound library is completed. The performance of the systems range from medium to high throughputs.
离子通道药物发现中大型化合物文库的有效筛选需要开发新的电生理技术,与传统的膜片钳技术相比,这种技术的吞吐量大大增加。为了应对这一挑战,Sophion Bioscience正致力于开发两种自动化膜片钳产品系列,一种是传统的基于移液管的系统Apatchi-1,另一种是基于硅芯片的系统QPatch。自动化的程度从半自动化(Apatchi-1)到完全自动化(QPatch 96)不等,其中经过培训的技术人员以有限的方式与系统交互,系统在无人值守的情况下连续工作,直到完成对整个化合物库的筛选。系统的性能范围从中等到高吞吐量。
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引用次数: 28
Characterization of adenosine A1 receptors in human proximal tubule epithelial (HK-2) cells. 人近端小管上皮细胞(HK-2)中腺苷A1受体的表征。
Pub Date : 2003-01-01
Yuting Tang, Lubing Zhou

Background: Adenosine A1 receptors (A1ARs) modulate various aspects of renal functions, such as hormone release, hemodynamics and tubular absorption. Here we set up to demonstrate the expression of A1ARs in an immortalized cell line (HK-2) derived from normal adult human proximal tubule. We also examined the mechanism whereby A1ARs signal in HK-2 cells and their potential role in renal physiology such as sodium-dependent phosphate transport.

Methods: Ligand binding assay of A1ARs was performed using plasma membranes of HK-2 cells and a selective high-affinity A1AR radioligand [3H]DPCPX. HK-2 cells in 96-well plates were treated with various agents (forskolin, adenosine receptor agonists, and antagonists) to activate or inhibit adenylate cyclase. Intracellular cyclic AMP accumulation was measured using cAMP flashplates. mRNA levels of adenosine receptors in HK-2 cells was determined by real-time PCR technique. Sodium-dependent phosphate transport across cell membrane was measured after 15-minute incubation of phosphorus-33 in transport buffer with HK-2 cells at room temperature.

Results: In HK-2 cells, A1ARs were expressed at a density of 211 +/- 74 fmol/mg membrane proteins. [3H]DPCPX bound to A1ARs on HK-2 cell membranes with Kd of 8.3 +/- 2.2 nM. Activation of A1ARs inhibited isoproterenol-stimulated adenylate cyclase activity through pertussis toxin-sensitive Gi protein in HK-2 cells. Coexpression of adenosine A2a receptors at a seemingly lower level than A1ARs was revealed by synergistically activating adenylate cyclase with forskolin. Real-time RT-PCR further demonstrated the expression of both A1AR and A2aAR in HK-2 cells. Sodium-dependent phosphate transport was augmented by activation of A1ARs in HK-2 cells.

Conclusion: A1ARs are expressed in human proximal tubule epithelial (HK-2) cells and modulate sodium-dependent phosphate transport.

背景:腺苷A1受体(A1ARs)调节肾功能的各个方面,如激素释放、血流动力学和肾小管吸收。在这里,我们建立了A1ARs在来自正常成人近端小管的永生化细胞系(HK-2)中的表达。我们还研究了A1ARs信号在HK-2细胞中的作用机制及其在肾生理中的潜在作用,如钠依赖性磷酸盐运输。方法:采用HK-2细胞质膜和选择性高亲和力A1AR放射配体[3H]DPCPX进行A1AR配体结合试验。用不同的药物(福斯克林、腺苷受体激动剂和拮抗剂)处理96孔板中的HK-2细胞,激活或抑制腺苷酸环化酶。使用cAMP闪光板测量细胞内循环AMP积累。实时荧光定量PCR检测HK-2细胞中腺苷受体mRNA水平。在室温下,将磷-33与HK-2细胞在转运缓冲液中孵育15分钟后,测量钠依赖性磷酸盐在细胞膜上的转运。结果:在HK-2细胞中,A1ARs以211 +/- 74 fmol/mg的膜蛋白密度表达。[3H] dppcpx与HK-2细胞膜上的A1ARs结合,Kd为8.3 +/- 2.2 nM。激活A1ARs可通过抑制HK-2细胞中百日咳毒素敏感Gi蛋白抑制异丙肾上腺素刺激的腺苷酸环化酶活性。通过与福斯克林协同激活腺苷酸环化酶,发现腺苷A2a受体的共表达水平似乎低于A1ARs。Real-time RT-PCR进一步证实在HK-2细胞中A1AR和A2aAR均有表达。通过激活HK-2细胞中的A1ARs,钠依赖性磷酸盐转运得以增强。结论:A1ARs在人近端小管上皮细胞(HK-2)中表达,并调节钠依赖性磷酸盐转运。
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引用次数: 0
Putative dynamics of vasopressin in its V1a receptor binding site. 抗利尿激素在其V1a受体结合位点的推测动力学。
Pub Date : 2003-01-01
Astrid Kaltenböck, Marcel Hibert, Thierry Langer

The molecular architecture of the GPCRs, including the dynamic set of interactions between the receptor and the ligand, is one of the key structural questions of biophysical approaches. In the present study, molecular dynamics (MD) simulations were performed on the well-validated molecular model of the vasopressin V1a receptor applying different parameters (i.e., force fields, time variation, use of constraints) in order to sample the conformational space of the endogenous ligand arginine vasopressin (AVP), to explore different putative binding modes, and to analyze the simulation results with respect to experimental data. Noteworthy, it is to mention that for the first time a model of the vasopressin receptor remained stable in a 500 ps MD simulation run under vacuo boundary conditions using the Kollman all-atom FF even though no constraints were imposed. Conclusively, we determined an optimized experimental procedure for studying the dynamics and structure-functionship of this highly important family of GPCRs: the use of MD simulations with the Kollman all-atom force-field parameters on a constrained receptor. Our simplified model may be used as a basis for structure based design of new GPCR ligands and for in silico screening of virtual combinatorial chemistry libraries.

GPCRs的分子结构,包括受体和配体之间的动态相互作用,是生物物理方法的关键结构问题之一。本研究采用分子动力学(MD)模拟了行之有效的抗利尿激素V1a受体分子模型,采用不同的参数(即力场、时间变化、约束条件的使用)对内源性配体精氨酸抗利尿激素(AVP)的构象空间进行了采样,探索了不同的推测结合模式,并将模拟结果与实验数据进行了分析。值得注意的是,尽管没有施加任何约束,但在真空边界条件下,使用Kollman全原子FF,加压素受体模型首次在500 ps MD模拟中保持稳定。最后,我们确定了一个优化的实验程序来研究这个非常重要的gpcr家族的动力学和结构功能:在一个受约束的受体上使用带有Kollman全原子力场参数的MD模拟。我们的简化模型可作为基于结构的新型GPCR配体设计和虚拟组合化学文库的计算机筛选的基础。
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引用次数: 0
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Receptors & channels
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