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2014 Sixth World Congress on Nature and Biologically Inspired Computing (NaBIC 2014)最新文献

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An architecture for user modeling on Intelligent and Adaptive Scheduling Systems 智能自适应调度系统的用户建模体系结构
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921861
A. Madureira, Bruno Cunha, J. Pereira, I. Pereira, S. Gomes
User modeling and user adaptive interaction research areas are becoming crucial applied issues to understand and support users as they interact with technology. Modeling the decisions to be made and the constraints placed by market globalization in a way that can address the needs of all stakeholders has been a long time area of academic and industrial research, mainly for Planning, Scheduling, and Strategic decision making areas. Business analysts, developers, and organizations involved in all phases of the business value chain have requirements for applied business insight through modeling. In this paper, an architecture for user modeling on Intelligent and Adaptive Scheduling System is proposed.
用户建模和用户自适应交互研究领域正在成为理解和支持用户与技术交互的关键应用问题。以一种能够满足所有利益相关者需求的方式,对将要做出的决策和市场全球化所施加的约束进行建模,一直是学术和工业研究的一个长期领域,主要用于规划、调度和战略决策制定领域。参与业务价值链所有阶段的业务分析师、开发人员和组织都需要通过建模来应用业务洞察力。提出了一种智能自适应调度系统的用户建模体系结构。
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引用次数: 5
Performance analysis of Multiobjective Artificial Bee Colony implementations for phylogenetic reconstruction 用于系统发育重建的多目标人工蜂群实现性能分析
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921850
Sergio Santander-Jiménez, M. A. Vega-Rodríguez
The inference of phylogenetic relationships represents one of the most challenging problems in bioinformatics. The increasing availability of biological data motivates the development of new algorithmic designs to conduct phylogenetic analyses on exponentially increasing search spaces. Bioinspired metaheuristics have arisen as a useful approach to address this problem, introducing different search strategies according to the way phylogenetic trees are represented and handled by the algorithm. In this work, we study the multiobjective and biological performance achieved by different Multiobjective Artificial Bee Colony implementations based on direct (tree-based) and indirect (distance-based) individual representations. Experiments on four real nucleotide data sets show meaningful differences in multiobjective performance between the analyzed approaches, obtaining significant biological results in comparison with other state-of-the-art phylogenetic methods.
系统发育关系的推断是生物信息学中最具挑战性的问题之一。越来越多的生物数据的可用性激发了新的算法设计的发展,以进行系统发育分析在指数增长的搜索空间。生物启发的元启发式作为一种解决这一问题的有用方法而出现,它根据系统发育树的表示和算法处理的方式引入了不同的搜索策略。在这项工作中,我们研究了基于直接(基于树的)和间接(基于距离的)个体表示的不同多目标人工蜂群实现所实现的多目标和生物学性能。在四个真实核苷酸数据集上的实验表明,所分析的方法在多目标性能上存在显著差异,与其他最先进的系统发育方法相比,获得了显著的生物学结果。
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引用次数: 2
Scheduling single-machine problem based on just-in-time principles 基于准时制原则的单机调度问题
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921872
Joana D. Dantas, L. Varela
In this paper are applied heuristics that try to find good solutions for a static single machine scheduling problem. In the considered problem different processing times and due dates are used and no preemption is allowed. The heuristics applied consider several performance measures, which intend to be customer and enterprise oriented. Customer oriented performance measures are mainly related to the accomplishment of due dates while enterprise-oriented ones typically consider other time-oriented measures, like the makespan. The heuristics used in this work are focused on Just-in-Time principles and on different costumer and enterprise performance measures, although preference is given to customer-oriented measures, namely the total number of tardy jobs and the maximum tardiness.
本文应用启发式算法对静态单机调度问题进行求解。在考虑的问题中,使用了不同的处理时间和截止日期,并且不允许抢占。应用的启发式方法考虑了几个性能度量,这些度量旨在以客户和企业为导向。面向客户的绩效指标主要与截止日期的完成有关,而面向企业的绩效指标通常考虑其他面向时间的指标,如最大完工时间。这项工作中使用的启发式方法集中在准时制原则和不同的客户和企业绩效度量上,尽管优先考虑面向客户的度量,即延迟工作的总数和最大延迟。
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引用次数: 4
Prototype of an Adaptive Decision Support System for Interactive Scheduling with MetaCognition and User Modeling Experience 具有元认知和用户建模经验的交互式调度自适应决策支持系统原型
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921869
A. Madureira, S. Gomes, Bruno Cunha, J. Pereira, J. M. Santos, I. Pereira
Current manufacturing scheduling has still difficulties to deal with real-world situations and, hence, human intervention is required to maintain real-time adaptation and optimization, to efficiently adapt to the inherent complex system dynamics. In this paper the prototype of an Adaptive Decision Support System for Interactive Scheduling with MetaCognition and User Modeling Experience (ADSyS) is proposed. A preliminary usability evaluation was streamlined to collect user's opinion about the system performance and interaction model.
当前的制造调度仍然难以处理现实情况,因此需要人为干预来保持实时适应和优化,以有效地适应固有的复杂系统动力学。提出了一种具有元认知和用户建模经验的交互式调度自适应决策支持系统的原型。初步的可用性评估被简化为收集用户对系统性能和交互模型的意见。
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引用次数: 11
Hybridizing evolutionary algorithms for creating classifier ensembles 用于创建分类器集成的杂交进化算法
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921858
Emmanuel Dufourq, N. Pillay
Genetic programming (GP) has been applied to solve data classification problems numerous times in previous studies and the findings in the literature confirm that GP is able to perform well. In more recent studies, researchers have shown that using a team of classifiers can outperform a single classifier. These teams are referred to as ensembles. Previously, several different attempts at creating ensembles have been investigated; some more complex than others. In this study, four approaches have been proposed, in which the ensemble methods hybridize a genetic algorithm with a GP algorithm in different ways. The first three approaches made use of a generational GP model, while the fourth used a steady state GP model. The four approaches were tested on eight public data sets and the findings confirm that the proposed ensembles outperform the standard GP method, and additionally outperform other GP methods found in literature.
在以往的研究中,遗传规划(Genetic programming, GP)已被多次应用于解决数据分类问题,文献研究结果证实了遗传规划的良好性能。在最近的研究中,研究人员已经证明,使用一组分类器可以胜过单个分类器。这些团队被称为组合。之前,已经研究了几种不同的创建合奏的尝试;有些比其他的更复杂。在这项研究中,提出了四种方法,其中集成方法以不同的方式将遗传算法与GP算法杂交。前三种方法使用了代GP模型,而第四种方法使用了稳态GP模型。在八个公共数据集上对这四种方法进行了测试,结果证实,所提出的集成优于标准GP方法,并且优于文献中发现的其他GP方法。
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引用次数: 4
Hybrid Genetic-Fuzzy Systems for improved performance in Residual-Based Fault Detection 改进残差故障检测性能的遗传-模糊混合系统
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921859
Francisco Serdio, Alexandru-Ciprian Zavoianu, E. Lughofer, K. Pichler, T. Buchegger, Hajrudin Efendic
We demonstrate how Residual-Based Fault Detection can be improved by means of Genetic-Fuzzy Systems (GFSs). Thus, the performance of a pure Data-Driven Fault Detection System, which relies on system identification models, is improved using models created by Genetic-Fuzzy Systems. The evolutionary approach is used in the cases where a deterministic training of the fuzzy systems is not able to produce good results. As such, when the deterministic optimization algorithm is trapped in local optima, GFSs are used in order to improve (fine tune) the non-global solutions using built-in genetic operators that are able to help converged solutions escape from their locality. The results are presented by means of Fault Detection Curves (FDC) -inspired by Receiver Operating Characteristic (ROC) curves- and show how, even when considering a Fault Detection (FD) system with good detection capabilities, the introduction of new, genetically evolved, fuzzy models still produces an important improvement, reflected by higher Areas Under the Curve (AUC).
我们演示了如何通过遗传模糊系统(gfs)改进基于残差的故障检测。因此,纯数据驱动故障检测系统的性能依赖于系统识别模型,使用遗传模糊系统创建的模型可以提高系统的性能。进化方法用于模糊系统的确定性训练不能产生良好结果的情况。因此,当确定性优化算法陷入局部最优时,使用gfs来改进(微调)非全局解决方案,使用内置的遗传算子,能够帮助收敛解决方案脱离其局部。结果是通过故障检测曲线(FDC)呈现的-受接收者工作特征(ROC)曲线的启发-并表明,即使考虑具有良好检测能力的故障检测(FD)系统,引入新的遗传进化的模糊模型仍然会产生重要的改进,反映在更高的曲线下面积(AUC)上。
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引用次数: 0
An experimental analysis of the Echo State Network initialization using the Particle Swarm Optimization 基于粒子群算法的回声状态网络初始化实验分析
Pub Date : 2014-10-16 DOI: 10.1109/NABIC.2014.6921880
Sebastián Basterrech, E. Alba, V. Snás̃el
This article introduces a robust hybrid method for solving supervised learning tasks, which uses the Echo State Network (ESN) model and the Particle Swarm Optimization (PSO) algorithm. An ESN is a Recurrent Neural Network with the hidden-hidden weights fixed in the learning process. The recurrent part of the network stores the input information in internal states of the network. Another structure forms a free-memory method used as supervised learning tool. The setting procedure for initializing the recurrent structure of the ESN model can impact on the model performance. On the other hand, the PSO has been shown to be a successful technique for finding optimal points in complex spaces. Here, we present an approach to use the PSO for finding some initial hidden-hidden weights of the ESN model. We present empirical results that compare the canonical ESN model with this hybrid method on a wide range of benchmark problems.
本文介绍了一种基于回声状态网络(ESN)模型和粒子群优化(PSO)算法的鲁棒混合求解监督学习任务的方法。回声状态网络是一种循环神经网络,其隐权在学习过程中是固定的。网络的循环部分将输入信息存储在网络的内部状态中。另一种结构是自由记忆法,用作监督学习工具。初始化ESN模型循环结构的设置过程会影响模型的性能。另一方面,粒子群算法已被证明是在复杂空间中寻找最优点的一种成功技术。在这里,我们提出了一种使用粒子群算法来寻找ESN模型的一些初始隐藏权值的方法。我们给出了在广泛的基准问题上比较典型回声状态网络模型和这种混合方法的经验结果。
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引用次数: 32
Feature selection and ensemble of regression models for predicting the protein macromolecule dissolution profile 预测蛋白质大分子溶解谱的特征选择和回归模型集合
Pub Date : 2014-10-16 DOI: 10.1109/NABIC.2014.6921864
Varun Ojha, K. Jackowski, A. Abraham, V. Snás̃el
Predicting the dissolution rate of proteins plays a significant role in pharmaceutical/medical applications. The rate of dissolution of Poly Lactic-co-Glycolic Acid (PLGA) micro- and nanoparticles is influenced by several factors. Considering all factors leads to a dataset with three hundred features, making the prediction difficult and inaccurate. Our present study consists of three phases. Firstly, dimensionality reduction techniques are applied in order to simplify the task and eliminate irrelevant and redundant attributes. Subsequently, a heterogeneous pool of several classical regression algorithms is created and evaluated. Regression algorithms in the pool are independently trained to identify the problem at hand. Finally, we test several ensemble methods in order to elevate the accuracy of the prediction. The Evolutionary Weighted Ensemble method proposed in this paper offered the lowest RMSE and significantly outperformed competing classical algorithms and other ensemble techniques.
预测蛋白质的溶解速率在制药/医疗应用中具有重要作用。聚乳酸-羟基乙酸(PLGA)微粒子和纳米粒子的溶解速率受多种因素的影响。考虑到所有因素会导致一个有300个特征的数据集,这使得预测变得困难和不准确。我们目前的研究分为三个阶段。首先,采用降维技术简化任务,剔除不相关和冗余的属性;随后,创建并评估了几种经典回归算法的异构池。池中的回归算法是独立训练的,以识别手头的问题。最后,为了提高预测的准确性,我们对几种集成方法进行了测试。本文提出的进化加权集成方法具有最低的均方根误差,显著优于经典算法和其他集成技术。
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引用次数: 2
Towards an autonomous multistate biomolecular devices built on DNA 迈向建立在DNA上的自主多态生物分子装置
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921899
T. Krasinski, Sebastian Sakowski, T. Popławski
A major challenge in DNA computing area is to design autonomous and programmable biomolecular devices built on DNA. The significant achievement in the field of DNA nanodevices was a laboratory implementation of the 2-state biomolecular finite automaton based on one restriction enzyme FokI [3]. Although this practical implementation represents a proof of concept for autonomous computing with DNA molecules, it has a limited computational power. The restriction enzyme FokI enables construction an automata with at most 3-states. We propose to use several restriction enzymes (instead of one) which act autonomously in a test tube to construct more powerful finite state machines. It enables to build any finite nondeterministic automata or even push-down automata. The autonomous operation of the automaton is based on alternating cleavages of DNA molecules by several restriction enzymes. We illustrate this new idea by presenting a laboratory implementation of a particular case of finite automata. In this experiment two restriction endonucleases act autonomously on DNA in one test tube. This approach may be used (in the future) to build nanomachines, even push-down automata (made of DNA molecules) which may be applied in medicine, pharmacy or biotechnology.
DNA计算领域的一个主要挑战是设计基于DNA的自主可编程生物分子器件。DNA纳米器件领域的重大成就是基于一种限制性内切酶FokI的两态生物分子有限自动机的实验室实现[3]。尽管这个实际实现代表了DNA分子自主计算的概念证明,但它的计算能力有限。限制性内切酶FokI能够构建最多具有3个状态的自动机。我们建议使用几种限制性内切酶(而不是一种)在试管中自主作用来构建更强大的有限状态机。它可以构建任何有限的不确定性自动机,甚至下推自动机。自动机的自主操作是基于几种限制性内切酶对DNA分子的交替切割。我们通过展示有限自动机的一个特殊情况的实验室实现来说明这个新思想。在这个实验中,两个限制性内切酶在一个试管中自主作用于DNA。这种方法(在未来)可能被用于制造纳米机器,甚至是下推自动机(由DNA分子制成),这可能应用于医学、制药或生物技术。
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引用次数: 4
Deleting or keeping outliers for classifier training? 为分类器训练删除或保留异常值?
Pub Date : 2014-10-16 DOI: 10.1109/NaBIC.2014.6921892
A. J. Tallón-Ballesteros, José Cristóbal Riquelme Santos
This paper introduces two statistical outlier detection approaches by classes. Experiments on binary and multi-class classification problems reveal that the partial removal of outliers improves significantly one or two performance measures for C4.5 and 1-nearest neighbour classifiers. Also, a taxonomy of problems according to the amount of outliers is proposed.
本文介绍了两种分类的统计离群值检测方法。在二值和多类分类问题上的实验表明,对于C4.5和1近邻分类器,局部去除异常值显著提高了一个或两个性能指标。此外,根据异常值的数量,提出了问题的分类方法。
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引用次数: 18
期刊
2014 Sixth World Congress on Nature and Biologically Inspired Computing (NaBIC 2014)
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