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Exploring the Microbiome in Human Reproductive Tract: High-Throughput Methods for the Taxonomic Characterization of Microorganisms. 探索人类生殖道微生物组:微生物分类特征的高通量方法。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-02-06 DOI: 10.1055/s-0044-1779025
Eduardo Salas-Espejo, Laura C Terrón-Camero, José L Ruiz, Nerea M Molina, Eduardo Andrés-León

Microorganisms are important due to their widespread presence and multifaceted roles across various domains of life, ecology, and industries. In humans, they underlie the proper functioning of multiple systems crucial to well-being, including immunological and metabolic functions. Emerging research addressing the presence and roles of microorganisms within human reproduction is increasingly relevant. Studies implementing new methodologies (e.g., to investigate vaginal, uterine, and semen microenvironments) can now provide relevant insights into fertility, reproductive health, or pregnancy outcomes. In that sense, cutting-edge sequencing techniques, as well as others such as meta-metabolomics, culturomics, and meta-proteomics, are becoming more popular and accessible worldwide, allowing the characterization of microbiomes at unprecedented resolution. However, they frequently involve rather complex laboratory protocols and bioinformatics analyses, for which researchers may lack the required expertise. A suitable pipeline would successfully enable both taxonomic classification and functional profiling of the microbiome, providing easy-to-understand biological interpretations. However, the selection of an appropriate methodology would be crucial, as it directly impacts the reproducibility, accuracy, and quality of the results and observations. This review focuses on the different current microbiome-related techniques in the context of human reproduction, encompassing niches like vagina, endometrium, and seminal fluid. The most standard and reliable methods are 16S rRNA gene sequencing, metagenomics, and meta-transcriptomics, together with complementary approaches including meta-proteomics, meta-metabolomics, and culturomics. Finally, we also offer case examples and general recommendations about the most appropriate methods and workflows and discuss strengths and shortcomings for each technique.

微生物非常重要,因为它们广泛存在于生命、生态和工业的各个领域,并发挥着多方面的作用。在人类中,微生物是多个对健康至关重要的系统正常运作的基础,包括免疫和新陈代谢功能。针对微生物在人类生殖过程中的存在和作用的新兴研究越来越具有现实意义。采用新方法(如调查阴道、子宫和精液微环境)进行的研究现在可以提供有关生育、生殖健康或妊娠结果的相关见解。从这个意义上说,最前沿的测序技术以及其他技术,如元代谢组学、培养组学和元蛋白质组学,在全球范围内正变得越来越流行和容易获得,从而能以前所未有的分辨率描述微生物组的特征。然而,它们往往涉及相当复杂的实验室方案和生物信息学分析,研究人员可能缺乏所需的专业知识。一个合适的管道可以成功实现微生物组的分类和功能分析,提供易于理解的生物学解释。然而,选择合适的方法至关重要,因为它直接影响到结果和观察的可重复性、准确性和质量。本综述将重点介绍目前与人类生殖有关的各种微生物相关技术,包括阴道、子宫内膜和精液等壁龛。最标准、最可靠的方法是 16S rRNA 基因测序、元基因组学和元转录组学,以及元蛋白质组学、元代谢组学和培养组学等补充方法。最后,我们还就最合适的方法和工作流程提供了案例和一般性建议,并讨论了每种技术的优缺点。
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引用次数: 0
Microbiome in Reproduction: Analysis Methods, Novel Techniques, and State-of-the-Art in Female Reproductive Health. 生殖中的微生物组:女性生殖健康的分析方法、新技术和最新技术。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-02-06 DOI: 10.1055/s-0043-1778655
Signe Altmäe
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引用次数: 0
The Upper Reproductive System Microbiome: Evidence beyond the Uterus. 上生殖系统微生物组:子宫之外的证据
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-02-06 DOI: 10.1055/s-0043-1778056
Analuce Canha-Gouveia, Valentina Di Nisio, Andres Salumets, Pauliina Damdimopoulou, Pilar Coy, Signe Altmäe, Alberto Sola-Leyva

The microbiome of the female upper reproductive system has garnered increasing recognition and has become an area of interest in the study of women's health. This intricate ecosystem encompasses a diverse consortium of microorganisms (i.e., microbiota) and their genomes (i.e., microbiome) residing in the female upper reproductive system, including the uterus, the fallopian tubes, and ovaries. In recent years, remarkable advancements have been witnessed in sequencing technologies and microbiome research, indicating the potential importance of the microbial composition within these anatomical sites and its impact in women's reproductive health and overall well-being. Understanding the composition, dynamics, and functions of the microbiome of the female upper reproductive system opens up exciting avenues for improving fertility, treating gynecological conditions, and advancing our comprehension of the intricate interplay between the microbiome and the female reproductive system. The aim of this study is to compile currently available information on the microbial composition of the female upper reproductive system in humans, with a focus beyond the uterus, which has received more attention in recent microbiome studies compared with the fallopian tubes and ovaries. In conclusion, this review underscores the potential role of this microbiome in women's physiology, both in health and disease.

女性上生殖系统的微生物组已获得越来越多的认可,并已成为女性健康研究的一个关注领域。这个错综复杂的生态系统包括居住在女性上生殖系统(包括子宫、输卵管和卵巢)中的各种微生物(即微生物群)及其基因组(即微生物组)。近年来,测序技术和微生物组研究取得了长足的进步,这表明这些解剖部位的微生物组成及其对女性生殖健康和整体福祉的影响具有潜在的重要性。了解女性上生殖系统微生物组的组成、动态和功能,为提高生育能力、治疗妇科疾病以及促进我们对微生物组和女性生殖系统之间错综复杂的相互作用的理解开辟了令人兴奋的途径。本研究的目的是汇集有关人类女性上生殖系统微生物组成的现有信息,重点关注子宫以外的部位,因为与输卵管和卵巢相比,子宫在最近的微生物组研究中受到了更多关注。总之,这篇综述强调了微生物组在女性生理健康和疾病中的潜在作用。
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引用次数: 0
Advanced Technologies for Studying Microbiome-Female Reproductive Tract Interactions: Organoids, Organoids-on-a-Chip, and Beyond. 研究微生物与女性生殖道相互作用的先进技术:有机体、芯片有机体及其他。
IF 1.9 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-01-23 DOI: 10.1055/s-0043-1778067
Yosun A Kaya, Marcel R de Zoete, Gaby S Steba

The female reproductive tract (FRT) is home to diverse microbial communities that play a pivotal role in reproductive health and disorders such as infertility, endometriosis, and cervical cancer. To understand the complex host-microbiota interactions within the FRT, models that authentically replicate the FRT's environment, including the interplay between the microbiota, mucus layer, immune system, and hormonal cycle, are key. Recent strides in organoid and microfluidic technologies are propelling research in this domain, offering insights into FRT-microbiota interactions and potential therapeutic avenues. This review delves into the current state of FRT organoid models and microbe integration techniques, evaluating their merits and challenges for specific research objectives. Emphasis is placed on innovative approaches and applications, including integrating organoids with microfluidics, and using patient-derived biobanks, as this offers potential for deeper mechanistic insights and personalized therapeutic strategies. Modeling various FRT properties in organoids is explored, from encompassing age-related epithelial features, oxygen levels, and hormonal effects to mucus layers, immune responses, and microbial interactions, highlighting their potential to transform reproductive health research and predict possible outcomes.

女性生殖道(FRT)是多种微生物群落的家园,它们在生殖健康和不孕症、子宫内膜异位症和宫颈癌等疾病中发挥着关键作用。要了解生殖道内宿主与微生物群之间复杂的相互作用,关键是要建立能真实再现生殖道环境的模型,包括微生物群、粘液层、免疫系统和激素周期之间的相互作用。最近在类器官和微流控技术方面取得的进展推动了这一领域的研究,为了解 FRT 与微生物群之间的相互作用和潜在的治疗途径提供了思路。本综述深入探讨了 FRT 有机体模型和微生物整合技术的现状,评估了它们在实现特定研究目标方面的优点和挑战。重点放在创新方法和应用上,包括将类器官与微流控技术相结合,以及使用源自患者的生物库,因为这为深入了解机理和个性化治疗策略提供了潜力。该书探讨了在有机体中模拟 FRT 的各种特性,从与年龄相关的上皮特征、氧水平和激素效应到粘液层、免疫反应和微生物相互作用,突出了它们在改变生殖健康研究和预测可能结果方面的潜力。
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引用次数: 0
Exploring Immunome and Microbiome Interplay in Reproductive Health: Current Knowledge, Challenges, and Novel Diagnostic Tools. 探索生殖健康中免疫组和微生物组的相互作用:当前知识、挑战和新型诊断工具。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-01-23 DOI: 10.1055/s-0043-1778017
Prakash Lingasamy, Vijayachitra Modhukur, Reet Mändar, Andres Salumets

The dynamic interplay between the immunome and microbiome in reproductive health is a complex and rapidly advancing research field, holding tremendously vast possibilities for the development of reproductive medicine. This immunome-microbiome relationship influences the innate and adaptive immune responses, thereby affecting the onset and progression of reproductive disorders. However, the mechanisms governing these interactions remain elusive and require innovative approaches to gather more understanding. This comprehensive review examines the current knowledge on reproductive microbiomes across various parts of female reproductive tract, with special consideration of bidirectional interactions between microbiomes and the immune system. Additionally, it explores innate and adaptive immunity, focusing on immunoglobulin (Ig) A and IgM antibodies, their regulation, self-antigen tolerance mechanisms, and their roles in immune homeostasis. This review also highlights ongoing technological innovations in microbiota research, emphasizing the need for standardized detection and analysis methods. For instance, we evaluate the clinical utility of innovative technologies such as Phage ImmunoPrecipitation Sequencing (PhIP-Seq) and Microbial Flow Cytometry coupled to Next-Generation Sequencing (mFLOW-Seq). Despite ongoing advancements, we emphasize the need for further exploration in this field, as a deeper understanding of immunome-microbiome interactions holds promise for innovative diagnostic and therapeutic strategies for reproductive health, like infertility treatment and management of pregnancy.

免疫组和微生物组在生殖健康中的动态相互作用是一个复杂且进展迅速的研究领域,为生殖医学的发展带来了巨大的可能性。这种免疫组和微生物组之间的关系会影响先天性免疫反应和适应性免疫反应,从而影响生殖系统疾病的发生和发展。然而,这些相互作用的机制仍然难以捉摸,需要创新的方法来加深理解。这篇综合综述探讨了目前有关女性生殖道各部位生殖微生物组的知识,特别考虑了微生物组与免疫系统之间的双向互动。此外,它还探讨了先天性免疫和适应性免疫,重点是免疫球蛋白 (Ig) A 和 IgM 抗体、它们的调节、自我抗原耐受机制以及它们在免疫平衡中的作用。本综述还重点介绍了微生物群研究中正在进行的技术创新,强调了标准化检测和分析方法的必要性。例如,我们评估了噬菌体免疫沉淀测序(PhIP-Seq)和微生物流式细胞术与下一代测序(mFLOW-Seq)等创新技术的临床实用性。尽管技术在不断进步,但我们仍强调有必要在这一领域进行进一步探索,因为加深对免疫组-微生物组相互作用的了解有望为生殖健康(如不孕症治疗和妊娠管理)的创新诊断和治疗策略带来希望。
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引用次数: 0
Microenvironment of the Lower Reproductive Tract: Focus on the Cervical Mucus Plug. 下生殖道的微环境:聚焦宫颈粘液栓。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-01-23 DOI: 10.1055/s-0043-1778661
Susana Ruiz-Durán, Celia M Tenorio, Irene Vico-Zúñiga, Sebastián Manzanares, Alberto Puertas-Prieto, Signe Altmäe, Eva Vargas

The female lower reproductive tract microbiota is a complex ecosystem comprising various microorganisms that play a pivotal role in maintaining women's reproductive well-being. During pregnancy, the vaginal microbiota undergoes dynamic changes that are important for a successful gestation. This review summarizes the implications of the cervical mucus plug microenvironment and its profound impact on reproductive health. Further, the symbiotic relationship between the vaginal microbiome and the cervical mucus plug is highlighted, with a special emphasis on how this natural barrier serves as a guardian against ascending infections. Understanding this complex host-microbes interplay could pave the way for innovative approaches to improve women's reproductive health and fertility.

女性下生殖道微生物群是一个复杂的生态系统,由各种微生物组成,在维持女性生殖健康方面发挥着至关重要的作用。在怀孕期间,阴道微生物群会发生动态变化,这对成功妊娠非常重要。本综述总结了宫颈粘液栓微环境的意义及其对生殖健康的深远影响。此外,文章还强调了阴道微生物群与宫颈粘液栓之间的共生关系,并特别强调了这一天然屏障是如何起到抵御上行感染的作用。了解这种复杂的宿主与微生物之间的相互作用,可以为改善妇女生殖健康和生育能力的创新方法铺平道路。
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引用次数: 0
Microbiome in Reproduction. 生殖中的微生物组
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-09-01 Epub Date: 2024-02-06 DOI: 10.1055/s-0044-1779026
Kathleen Hoeger, Terhi Piltonen
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引用次数: 0
Obesity and Male Infertility: True, True, and Unrelated? 肥胖与男性不育:真假与否?
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-07-01 Epub Date: 2024-01-10 DOI: 10.1055/s-0043-1777725
Carl Ceraolo, Amanda Rubano, J Scott Gabrielsen

While the prevalence of obesity has rapidly increased worldwide, there has also been a notable decline in semen parameters over the last several decades. While obesity can negatively impact reproductive hormones, many studies have sought a link between rising obesity and decreased male fertility potential. Nonetheless, few data support a direct link between the two. The focus on obesity as a causative factor in male infertility can potentially result in patient harm through delayed fertility treatment and missed diagnoses. This review investigates the associations between obesity and male infertility and why a potential direct link has been elusive and may not exist. Additionally, indirect mechanisms that may link the two will be reviewed and treatment options for obese infertile men presenting for evaluation will briefly be discussed.

在全球肥胖症发病率迅速上升的同时,精液参数在过去几十年中也明显下降。虽然肥胖会对生殖激素产生负面影响,但许多研究都在寻找肥胖增加与男性生育能力下降之间的联系。然而,很少有数据支持两者之间存在直接联系。将肥胖作为男性不育症的致病因素,可能会因延误生育治疗和漏诊而对患者造成伤害。本综述探讨了肥胖与男性不育之间的关联,以及为什么潜在的直接关联一直难以捉摸且可能并不存在。此外,还将回顾可能将两者联系起来的间接机制,并简要讨论肥胖不育男性接受评估时的治疗方案。
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引用次数: 0
Weight Bias in Reproductive Medicine: A Curiously Unexplored Frontier. 生殖医学中的体重偏差:一个奇怪的未开发的前沿。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-07-01 Epub Date: 2023-11-22 DOI: 10.1055/s-0043-1777016
Adam T Evans, Wendy S Vitek

Obesity has been associated with a multitude of medical comorbidities, infertility, and adverse obstetric outcomes. Weight stigma and weight bias pervade not only the medical field but also education, employment, and activities of daily living. The experience of weight stigma has been shown to adversely impact not only the mental health of individuals with overweight or obesity but also worsen obesogenic behaviors, and medical comorbidities. This review frames the rise of weight stigma and weight bias within the context of the "obesity epidemic" and explores its associations with infertility and decreased access to health care and its subsequent impact on the lives of individuals. Furthermore, it explores the concepts of intrinsic and extrinsic weight stigma/bias and highlights the need for further examination and research into the impact of these factors on access to reproductive medicine and subsequent outcomes.

肥胖与许多医学合并症、不孕症和不良产科结果有关。体重歧视和体重偏见不仅存在于医疗领域,也存在于教育、就业和日常生活活动中。体重耻辱的经历已被证明不仅对超重或肥胖个体的心理健康产生不利影响,而且还会恶化致肥行为和医疗合并症。本综述在“肥胖流行”的背景下对体重耻辱感和体重偏见的上升进行了阐述,并探讨了其与不孕症和获得医疗保健机会减少的关系及其对个人生活的后续影响。此外,它还探讨了内在和外在体重耻辱/偏见的概念,并强调需要进一步检查和研究这些因素对获得生殖医学和后续结果的影响。
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引用次数: 0
Navigating the Role of Anti-Obesity Agents Prior to Pregnancy: A Narrative Review. 妊娠前抗肥胖药物的作用:叙述性回顾。
IF 2.7 3区 医学 Q3 OBSTETRICS & GYNECOLOGY Pub Date : 2023-07-01 Epub Date: 2023-11-16 DOI: 10.1055/s-0043-1776795
Alyse S Goldberg, Samin Dolatabadi, Heidi Dutton, Jamie L Benham

Utilization of anti-obesity agents is rising in reproductive-age females with some planning for future pregnancy. Lifestyle-induced weight loss has been shown to increase spontaneous conception rate, improve rates of fertility intervention complications, and decrease pregnancy comorbidities. However, the definitive role of assisting weight loss with medication prior to pregnancy remains to be established. The implications of anti-obesity agent used prior to pregnancy are explored in this narrative review, considering benefits of weight loss as well as available evidence for use and risks of anti-obesity agents prior to pregnancy.

在育龄女性中,抗肥胖药物的使用率正在上升,她们对未来怀孕有一些计划。生活方式引起的体重减轻已被证明可以增加自然受孕率,改善生育干预并发症的发生率,并减少妊娠合并症。然而,怀孕前用药物辅助减肥的最终作用仍有待确定。考虑到减肥的益处以及妊娠前使用抗肥胖药物的现有证据和风险,本综述探讨了妊娠前使用抗肥胖药物的意义。
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引用次数: 0
期刊
Seminars in reproductive medicine
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