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Compressed ultrafast photography (CUP): redefining the limit of passive ultrafast imaging (Conference Presentation) 压缩超快摄影(CUP):重新定义被动超快成像的极限(会议报告)
Pub Date : 2016-06-28 DOI: 10.1117/12.2211897
Liang Gao
Video recording of ultrafast phenomena using a detector array based on the CCD or CMOS technologies is fundamentally limited by the sensor’s on-chip storage and data transfer speed. To get around this problem, the most practical approach is to utilize a streak camera. However, the resultant image is normally one dimensional—only a line of the scene can be seen at a time. Acquiring a two-dimensional image thus requires mechanical scanning across the entire field of view. This requirement poses severe restrictions on the applicable scenes because the event itself must be repetitive. To overcome these limitations, we have developed a new computational ultrafast imaging method, referred to as compressed ultrafast photography (CUP), which can capture two-dimensional dynamic scenes at up to 100 billion frames per second. Based on the concept of compressed sensing, CUP works by encoding the input scene with a random binary pattern in the spatial domain, followed by shearing the resultant image in a streak camera with a fully-opened entrance slit. The image reconstruction is the solution of the inverse problem of above processes. Given sparsity in the spatiotemporal domain, the original event datacube can be reasonably estimated by employing a two-step iterative shrinkage/thresholding algorithm. To demonstrate CUP, we imaged light reflection, refraction, and racing in two different media (air and resin). Our technique, for the first time, enables video recording of photon propagation at a temporal resolution down to tens of picoseconds. Moreover, to further expand CUP’s functionality, we added a color separation unit to the system, thereby allowing simultaneous acquisition of a four-dimensional datacube (x,y,t,λ), where λ is wavelength, within a single camera snapshot.
使用基于CCD或CMOS技术的探测器阵列对超快现象进行视频记录,从根本上受到传感器片上存储和数据传输速度的限制。为了解决这个问题,最实用的方法是利用条纹相机。然而,生成的图像通常是一维的——一次只能看到场景的一行。因此,获取二维图像需要对整个视场进行机械扫描。由于事件本身必须是重复的,因此这一要求对适用场景造成了严重的限制。为了克服这些限制,我们开发了一种新的计算超快成像方法,称为压缩超快摄影(CUP),它可以以每秒高达1000亿帧的速度捕捉二维动态场景。基于压缩感知的概念,CUP的工作原理是在空间域中用随机二进制模式对输入场景进行编码,然后在具有全开入口狭缝的条纹相机中剪切生成的图像。图像重建是上述过程的逆问题的解。考虑到时空域的稀疏性,可以采用两步迭代收缩/阈值算法对原始事件数据立方体进行合理估计。为了演示CUP,我们对两种不同介质(空气和树脂)中的光反射、折射和竞速进行了成像。我们的技术首次实现了以几十皮秒的时间分辨率记录光子传播的视频。此外,为了进一步扩展CUP的功能,我们在系统中添加了一个分色单元,从而允许在单个相机快照中同时获取四维数据立方体(x,y,t,λ),其中λ是波长。
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引用次数: 1
Compressive high speed flow microscopy with motion contrast (Conference Presentation) 运动对比压缩高速流动显微镜(会议报告)
Pub Date : 2016-06-28 DOI: 10.1117/12.2216602
B. Bosworth, J. R. Stroud, D. Tran, T. Tran, S. Chin, M. Foster
High-speed continuous imaging systems are constrained by analog-to-digital conversion, storage, and transmission. However, real video signals of objects such as microscopic cells and particles require only a few percent or less of the full video bandwidth for high fidelity representation by modern compression algorithms. Compressed Sensing (CS) is a recent influential paradigm in signal processing that builds real-time compression into the acquisition step by computing inner products between the signal of interest and known random waveforms and then applying a nonlinear reconstruction algorithm. Here, we extend the continuous high-rate photonically-enabled compressed sensing (CHiRP-CS) framework to acquire motion contrast video of microscopic flowing objects. We employ chirp processing in optical fiber and high-speed electro-optic modulation to produce ultrashort pulses each with a unique pseudorandom binary sequence (PRBS) spectral pattern with 325 features per pulse at the full laser repetition rate (90 MHz). These PRBS-patterned pulses serve as random structured illumination inside a one-dimensional (1D) spatial disperser. By multiplexing the PRBS patterns with a user-defined repetition period, the difference signal y_i=phi_i (x_i - x_{i-tau}) can be computed optically with balanced detection, where x is the image signal, phi_i is the PRBS pattern, and tau is the repetition period of the patterns. Two-dimensional (2D) image reconstruction via iterative alternating minimization to find the best locally-sparse representation yields an image of the edges in the flow direction, corresponding to the spatial and temporal 1D derivative. This provides both a favorable representation for image segmentation and a sparser representation for many objects that can improve image compression.
高速连续成像系统受到模数转换、存储和传输的限制。然而,真实的视频信号的对象,如微观细胞和粒子只需要百分之几或更少的全视频带宽为高保真表示的现代压缩算法。压缩感知(CS)是最近在信号处理中有影响力的一种范式,它通过计算感兴趣的信号与已知随机波形之间的内积,然后应用非线性重构算法,将实时压缩构建到采集步骤中。在这里,我们扩展了连续高速光子压缩传感(CHiRP-CS)框架,以获取微观流动物体的运动对比度视频。我们在光纤中使用啁啾处理和高速电光调制来产生超短脉冲,每个脉冲具有独特的伪随机二值序列(PRBS)光谱模式,每个脉冲在全激光重复频率(90 MHz)下具有325个特征。这些prbs图案的脉冲在一维(1D)空间分散器中充当随机结构照明。通过将PRBS模式与用户自定义的重复周期进行复用,可以通过平衡检测光学计算差分信号y_i=phi_i (x_i - x_{i-tau}),其中x为图像信号,phi_i为PRBS模式,tau为模式的重复周期。二维(2D)图像重建通过迭代交替最小化来找到最佳的局部稀疏表示,得到流动方向的边缘图像,对应于空间和时间的一维导数。这既为图像分割提供了有利的表示,又为许多可以改进图像压缩的对象提供了更稀疏的表示。
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引用次数: 0
Improvement of reconstructed phase distribution of fast moving phase object in digital holographic microscope 数字全息显微镜下快速运动相物重构相位分布的改进
Pub Date : 2016-06-08 DOI: 10.1117/12.2216745
P. Xia, Naoya Nagahama, X. Quan, K. Nitta, O. Matoba, Y. Awatsuji
For defect detection or undesired object in commercial products, it is required to develop a fast measurement system that can obtain three-dimensional distribution of surface of the opaque medium such as metal or inside of the transparent medium. For this purpose, we fabricated a digital holographic microscope using a fast image sensor when the phase object is put on a fast movable stage. In the fabricated system, an image sensor operated at maximum frame rate of 2000 fps and a movable stage operated at maximum speed of 300 mm/s are introduced. Under the continuous wave illumination, motion-blurred phase object is reconstructed. By using numerical processing such as deconvolution filter, the reconstructed phase distribution is much improved. Numerical results are presented.
对于商业产品中的缺陷检测或不需要的物体,需要开发一种能够获得金属等不透明介质表面或透明介质内部三维分布的快速测量系统。为此,我们利用快速图像传感器制作了一种数字全息显微镜,将相位物体放置在快速移动平台上。在制作的系统中,介绍了一个最大帧速率为2000 fps的图像传感器和一个最大速度为300 mm/s的移动平台。在连续波照射下,重建运动模糊的相位目标。通过反褶积滤波等数值处理,重构的相位分布得到了很大改善。给出了数值结果。
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引用次数: 0
Revolutionary 3D printing systems of designable gels to develop novel applications and markets (Conference Presentation) 革命性的可设计凝胶3D打印系统开发新应用和市场(会议报告)
Pub Date : 2016-06-03 DOI: 10.1117/12.2222418
H. Furukawa, M. Kawakami, A. Saito, K. Sakai, Taizo Hayashida, K. Toba
Based on the world-first 3D gel printing technology, we aim to develop 3D gel printing system to realize free-shape design of soft and wet materials. We defined ‘Designable Gels’ as revolutionary gels whose molecular structure, shape, and functions can be designed by users. By virtue of the 3D gel printing system, we can use 3D high-performance gels materials and realize both designed 3D shape and designed properties. At the same time, analysis technology with scanning microscopic light scattering will be immediately used to guarantee the quality of manufactured gels. We believe we will contribute to extend the fields of medical and robot applications and create new markets.
基于世界首创的3D凝胶打印技术,我们的目标是开发3D凝胶打印系统,实现柔软和潮湿材料的自由形状设计。我们将“可设计凝胶”定义为一种革命性的凝胶,它的分子结构、形状和功能都可以由用户设计。利用3D凝胶打印系统,我们可以使用3D高性能凝胶材料,实现设计的3D形状和设计的性能。同时,将立即采用扫描显微光散射分析技术来保证生产的凝胶的质量。我们相信我们将为扩展医疗和机器人应用领域并创造新的市场做出贡献。
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引用次数: 0
Phi optics: from image to knowledge (Conference Presentation) Phi光学:从图像到知识(会议报告)
Pub Date : 2016-05-26 DOI: 10.1117/12.2214895
C. Chiritescu
Optical microscopy of live cells and tissues provides the main insight for life science researchers in academia and bio-pharma. The cells have very small features, are transparent, and require long term observations (hours to days) to measure the effects of drugs and diseases. New technologies - under the umbrella term of Quantitative Phase Imaging (QPI) - have come to light in the past decade to challenge and complement the current state of the art solutions that use fluorophores. Phi Optics talk will outline their lessons learned in the process of bringing an academic idea to the commercial space.
活细胞和组织的光学显微镜为学术界和生物制药领域的生命科学研究人员提供了主要的见解。这些细胞具有非常小的特征,是透明的,需要长期观察(数小时到数天)来测量药物和疾病的影响。在过去的十年中,新技术——在定量相位成像(QPI)的总称下——已经出现,以挑战和补充目前使用荧光团的最先进的解决方案。Phi Optics讲座将概述他们在将学术理念带入商业空间的过程中吸取的经验教训。
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引用次数: 1
Multicolor single-molecule imaging by spectral point-spread-function engineering (Conference Presentation) 基于光谱点扩展函数工程的多色单分子成像(会议报告)
Pub Date : 2016-05-26 DOI: 10.1117/12.2208982
Y. Shechtman, Lucien E. Weiss, Adam S. Backer, W. Moerner
We extend the information content of the microscope’s point-spread-function (PSF) by adding a new degree of freedom: spectral information. We demonstrate controllable encoding of a microscopic emitter’s spectral information (color) and 3D position in the shape of the microscope’s PSF. The design scheme works by exploiting the chromatic dispersion of an optical element placed in the optical path. By using numerical optimization we design a single physical pattern that yields different desired phase delay patterns for different wavelengths. To demonstrate the method’s applicability experimentally, we apply it to super-resolution imaging and to multiple particle tracking.
我们通过增加一个新的自由度:光谱信息来扩展显微镜的点扩展函数(PSF)的信息内容。我们演示了显微镜发射器的光谱信息(颜色)和显微镜PSF形状的3D位置的可控编码。该设计方案通过利用放置于光路中的光学元件的色散来工作。通过数值优化,我们设计了一个单一的物理模式,在不同波长下产生不同的期望相位延迟模式。为了证明该方法在实验中的适用性,我们将其应用于超分辨率成像和多粒子跟踪。
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引用次数: 0
Label free imaging system for measuring blood flow speeds using a single multi-mode optical fiber (Conference Presentation) 使用单根多模光纤测量血流速度的无标签成像系统(会议介绍)
Pub Date : 2016-05-26 DOI: 10.1117/12.2213173
I. Sigal, A. M. C. Caravaca Aguirre, R. Gad, R. Piestun, O. Levi
We demonstrate a single multi-mode fiber-based micro-endoscope for measuring blood flow speeds. We use the transmission-matrix wavefront shaping approach to calibrate the multi-mode fiber and raster-scan a focal spot across the distal fiber facet, imaging the cross-polarized back-reflected light at the proximal facet using a camera. This setup allows assessment of the backscattered photon statistics: by computing the mean speckle contrast values across the proximal fiber facet we show that spatially-resolved flow speed maps can be inferred by selecting an appropriate camera integration time. The proposed system is promising for minimally-invasive studies of neurovascular coupling in deep brain structures.
我们展示了一种用于测量血流速度的单模光纤微内窥镜。我们使用传输矩阵波前整形方法校准多模光纤,并通过光栅扫描远端光纤facet的焦点,使用相机对近端facet的交叉偏振背反射光进行成像。这种设置允许评估后向散射光子统计:通过计算近端光纤facet的平均散斑对比度值,我们表明可以通过选择适当的相机集成时间来推断空间分辨的流速图。该系统有望用于脑深部结构神经血管耦合的微创研究。
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引用次数: 0
Using quantitative interference phase microscopy for sperm acrosome evaluation (Conference Presentation) 定量干涉相显微镜用于精子顶体评价(会议报告)
Pub Date : 2016-05-26 DOI: 10.1117/12.2216724
M. Balberg, Ksawery Kalinowski, M. Levi, N. Shaked
We demonstrate quantitative assessment of sperm cell morphology, primarily acrosomal volume, using quantitative interference phase microscopy (IPM). Normally, the area of the acrosome is assessed using dyes that stain the acrosomal part of the cell. We have imaged fixed individual sperm cells using IPM. Following, the sample was stained and the same cells were imaged using bright field microscopy (BFM). We identified the acrosome using the stained BFM image, and used it to define a quantitative corresponding area in the IPM image and determine a quantitative threshold for evaluating the volume of the acrosome.
我们展示了定量评估精子细胞形态,主要顶体体积,使用定量干涉相显微镜(IPM)。通常,顶体的面积是用染色细胞顶体部分的染料来评估的。我们使用IPM对固定的单个精子细胞进行成像。随后,对样品进行染色,并用明场显微镜(BFM)对相同的细胞进行成像。我们使用染色的BFM图像识别顶体,并使用它在IPM图像中定义定量对应区域,并确定定量阈值来评估顶体的体积。
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引用次数: 0
Deconstructing autofluorescence: non-invasive detection and monitoring of biochemistry in cells and tissues (Conference Presentation) 解构自身荧光:细胞和组织中生物化学的无创检测和监测(会议报告)
Pub Date : 2016-05-17 DOI: 10.1117/12.2212443
E. Goldys, M. Gosnell, A. Anwer, J. C. Cassano, C. Sue, S. Mahbub, S. M. Pernichery, D. Inglis, Partho P. Adhikary, J. Jazayeri, M. Cahill, S. Saad, C. Pollock, M. Sutton-Mcdowall, Jeremy G. Thompson
Automated and unbiased methods of non-invasive cell monitoring able to deal with complex biological heterogeneity are fundamentally important for biology and medicine. Label-free cell imaging provides information about endogenous fluorescent metabolites, enzymes and cofactors in cells. However extracting high content information from imaging of native fluorescence has been hitherto impossible. Here, we quantitatively characterise cell populations in different tissue types, live or fixed, by using novel image processing and a simple multispectral upgrade of a wide-field fluorescence microscope. Multispectral intrinsic fluorescence imaging was applied to patient olfactory neurosphere-derived cells, cell model of a human metabolic disease MELAS (mitochondrial myopathy, encephalomyopathy, lactic acidosis, stroke-like syndrome). By using an endogenous source of contrast, subtle metabolic variations have been detected between living cells in their full morphological context which made it possible to distinguish healthy from diseased cells before and after therapy. Cellular maps of native fluorophores, flavins, bound and free NADH and retinoids unveiled subtle metabolic signatures and helped uncover significant cell subpopulations, in particular a subpopulation with compromised mitochondrial function. The versatility of our method is further illustrated by detecting genetic mutations in cancer, non-invasive monitoring of CD90 expression, label-free tracking of stem cell differentiation, identifying stem cell subpopulations with varying functional characteristics, tissue diagnostics in diabetes, and assessing the condition of preimplantation embryos. Our optimal discrimination approach enables statistical hypothesis testing and intuitive visualisations where previously undetectable differences become clearly apparent.
能够处理复杂生物异质性的非侵入性细胞监测的自动化和公正方法对生物学和医学至关重要。无标记细胞成像提供了内源性荧光代谢物、酶和辅助因子在细胞中的信息。然而,迄今为止,从天然荧光成像中提取高含量信息是不可能的。在这里,我们定量表征细胞群在不同的组织类型,活的或固定的,通过使用新的图像处理和一个简单的多光谱升级的宽视场荧光显微镜。多光谱本征荧光成像应用于患者嗅神经球源性细胞,人类代谢性疾病MELAS(线粒体肌病、脑肌病、乳酸酸中毒、卒中样综合征)的细胞模型。通过使用内源性对比源,在其完整的形态学背景下,在活细胞之间检测到细微的代谢变化,这使得在治疗前后区分健康细胞和病变细胞成为可能。天然荧光团、黄素、结合和游离NADH和类维生素a的细胞图谱揭示了微妙的代谢特征,并帮助揭示了重要的细胞亚群,特别是线粒体功能受损的亚群。通过检测癌症基因突变、无创监测CD90表达、无标记跟踪干细胞分化、识别具有不同功能特征的干细胞亚群、糖尿病组织诊断和评估植入前胚胎状况,进一步说明了我们方法的多功能性。我们的最佳判别方法使统计假设检验和直观的可视化,以前无法察觉的差异变得清晰明显。
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引用次数: 1
IR fiber-optic evanescent wave spectroscopy (FEWS) for sensing applications (Conference Presentation) 红外光纤倏逝波光谱(FEWS)传感应用(会议报告)
Pub Date : 2016-05-17 DOI: 10.1117/12.2209130
A. Katzir
We developed crystalline AgClBr fibers of diameters 0.7-0.9mm that are flexible, non-toxic, insoluble in water and highly transparent between 4-15µm. We used these fibers for various sensing applications. Highly sensitive absorption measurements in the mid-IR may be carried out by Fiber-optic Evanescent Wave Spectroscopy (FEWS). A typical FEWS system is based on three mid-IR components: a tunable source, a detector and a AgClBr fiber sensor that is brought in contact with the samples. We used FTIR spectrometers or tunable gas lasers or quantum cascade lasers (QCLs) as mid-IR sources. We used this FEWS system for measurements on gases, liquids and solids. In particular we used it for several biomedical applications. Measurements in vivo: (1) Early detection of skin diseases (e.g. melanoma). (2) Measurements on cells and bacteria. (3) Measurements on cornea. Measurements in vitro: (4) Characterization of urinary and biliary stones. (5) Blood measurements. The FEWS method is simple, inexpensive and does not require sample processing. It would be useful for diagnostic measurements on the outer part of the body of a patient, as well as for endoscopic measurements. It would also useful for measurements on tissue samples removed from the body. In addition we develop Scanning Near-field Infrared Microscope that will be used for spectral imaging with sub-wavelength resolution in the mid-IR. The various AgClBr fiber-optic sensors are expected to be important diagnostic tools at the hand of physicians in the future.
我们开发了直径0.7-0.9mm的结晶AgClBr纤维,具有柔韧性、无毒、不溶于水、4-15 μ m之间的高透明度。我们将这些纤维用于各种传感应用。高灵敏度的中红外吸收测量可以通过光纤倏逝波光谱(FEWS)来实现。典型的FEWS系统基于三个中红外组件:可调谐源、检测器和与样品接触的AgClBr光纤传感器。我们使用FTIR光谱仪或可调谐气体激光器或量子级联激光器(qcl)作为中红外光源。我们使用这个FEWS系统测量气体、液体和固体。特别是我们在一些生物医学应用中使用了它。体内测量:(1)早期发现皮肤疾病(如黑色素瘤)。(2)细胞和细菌的测量。(3)角膜测量。体外测量:(4)尿结石和胆结石的特征。(5)血液测量。FEWS方法简单,价格低廉,不需要样品处理。这将有助于对患者身体外部的诊断测量,以及内窥镜测量。它也可用于测量从人体中取出的组织样本。此外,我们开发的扫描近场红外显微镜,将用于光谱成像与亚波长分辨率在中红外。各种AgClBr光纤传感器有望在未来成为医生手中重要的诊断工具。
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引用次数: 1
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SPIE BiOS
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