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Wild rodents harbour high diversity of Arthroderma 野生啮齿类动物具有较高的节肢动物多样性
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2023.50.02
Š. Moulíková, M. Kolařík, J. Lorch, D. Kolarczyková, V. Hubka, A. Čmoková
Arthroderma is the most diverse genus of dermatophytes, and its natural reservoir is considered to be soil enriched by keratin sources. During a study on the diversity of dermatophytes in wild small rodents in the Czech Republic, we isolated several strains of Arthroderma. To explore the diversity and ecological significance of these isolates from rodents (n = 29), we characterised the strains genetically (i.e., sequenced ITS, tubb and tef1α), morphologically, physiologically, and by conducting mating experiments. We then compared the rodent-derived strains to existing ITS sequence data from GenBank and the GlobalFungi Database to further investigate biogeography and the association of Arthroderma species with different types of environments. In total, eight Arthroderma species were isolated from rodents, including four previously described species (A. crocatum, A. cuniculi, A. curreyi, A. quadrifidum) and four new species proposed herein, i.e., A. rodenticum, A. simile, A. zoogenum and A. psychrophilum. The geographical distribution of these newly described species was not restricted to the Czech Republic nor rodents. Additional isolates were obtained from bats and other mammals, reptiles, and soil from Europe, North America, and Asia. Data mining showed that the genus has a diverse ecology, with some lineages occurring relatively frequently in soil, whereas others appeared to be more closely associated with live animals, as we observed in A. rodenticum. Low numbers of sequence reads ascribed to Arthroderma in soil show that the genus is rare in this environment, which supports the hypothesis that Arthroderma spp. are not soil generalists but rather strongly associated with animals and keratin debris. This is the first study to utilise existing metabarcoding data to assess biogeographical, ecological, and diversity patterns in dermatophytes.
节肢动物是最多样化的皮肤植物属,其天然储存库被认为是富含角蛋白来源的土壤。在对捷克共和国野生小型啮齿动物皮肤真菌多样性的研究中,我们分离出了几株节肢动物。为了探索这些分离菌株的多样性和生态意义(n = 29),我们对这些菌株进行了遗传(即ITS、tubb和tef1α的测序)、形态学、生理学和交配实验。然后,我们将啮齿动物衍生的菌株与来自GenBank和GlobalFungi Database的现有ITS序列数据进行比较,以进一步研究生物地理学以及节肢动物物种与不同类型环境的关系。从鼠类中分离到节肢动物8种,包括4种(crocatum、cuuniculi、curreyi、quadrifidum)和4种新种(rodenticum、a.f ilium、a.zoogenum、a.c rophilum)。这些新描述的物种的地理分布并不局限于捷克共和国或啮齿动物。从蝙蝠和其他哺乳动物、爬行动物以及欧洲、北美和亚洲的土壤中获得了其他分离株。数据挖掘表明,该属具有多样化的生态,其中一些谱系在土壤中相对频繁地发生,而另一些谱系则与活体动物关系更密切,如我们在a . rodenticum中观察到的那样。土壤中节肢动物的低序列读数表明该属在该环境中很少见,这支持了节肢动物不是土壤通虫的假设,而是与动物和角蛋白碎片密切相关。这是第一个利用现有元条形码数据来评估皮肤植物的生物地理、生态和多样性模式的研究。
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引用次数: 3
Phylogeny, taxonomy, and character evolution in Entoloma subgenus Nolanea 肠虫亚属的系统发育、分类和性状演化
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.49.04
K. Reschke, O. Morozova, B. Dima, J. Cooper, G. Corriol, A. Biketova, M. Piepenbring, M. Noordeloos
Nolanea is a well-known and long-established subgenus of the genus Entoloma traditionally defined mainly by the mycenoid basidiocarps of the included species. Until now, revisions of this subgenus including molecular data exist only on a regional scale. In this study, the phylogeny of species of Nolanea is analysed based on multi-gene DNA sequences including data of specimens from all continents. New primers are designed for the mitochondrial small subunit and RPB2. The performance of the DNA loci in reconstructing the phylogeny in subg. Nolanea is evaluated. An ancestral state reconstruction is used to infer the character state evolution as well as the importance and reliability of morphological characters used to define subclades below subgeneric rank. Based on the results, seven sections are recognised in Nolanea: the sections Holoconiota, Infularia, Mammosa, Nolanea, Papillata, Staurospora, and the newly described sect. Elegantissima. A large phylogeny based on the fungal barcode rDNA ITS with numerous type sequences is used to evaluate current species concepts. Several names are revealed to be synonyms of older names. Four species new to science are described, namely E. altaicum, E. argillaceum, E. cornicolor, and E. incognitum. Lectotypes, epitypes or neotypes are designated for E. cetratum, E. clandestinum, E. conferendum, E. cuspidiferum, E. hebes, E. minutum, E. nitens, and E. rhodocylix. The re-evaluation of the limits of subg. Nolanea leads to an altered concept excluding species with distinct, lageniform cheilocystidia. The section Ameides is placed in subg. Leptonia. For several species formerly accommodated in Nolanea, but excluded now, viz., E. lepiotoides, E. rhombisporum, E. subelegans, and E. velenovskyi the taxonomic position remains unclear, because of the yet unresolved phylogeny of the whole genus Entoloma.
Nolanea是一个众所周知的、建立已久的Entoloma属亚属,传统上主要由该属的菌丝体担子果定义。直到现在,这个亚属的修订包括分子数据只存在于区域尺度。在本研究中,基于多基因DNA序列,包括来自各大洲的标本数据,分析了Nolanea物种的系统发育。针对线粒体小亚基和RPB2设计了新的引物。DNA位点在亚群系统发育重建中的作用。诺兰尼亚被评估。利用祖先状态重构来推断特征状态的演化,以及用来定义亚属等级以下亚支系的形态特征的重要性和可靠性。根据结果,在Nolanea中可以识别出七个部分:Holoconiota, Infularia, Mammosa, Nolanea, Papillata, Staurospora和新描述的Elegantissima。基于具有众多类型序列的真菌条形码rDNA ITS的大型系统发育用于评估当前的物种概念。有几个名字被发现是旧名字的同义词。描述了四个科学上的新物种,即E. altaicum, E. argillaceum, E. cornicolor和E. incognitum。选型、表型或新型分别被指定为中央芽孢杆菌、秘密芽孢杆菌、会议芽孢杆菌、虎斑芽孢杆菌、hebes芽孢杆菌、minutum芽孢杆菌、nitens芽孢杆菌和rhodocylix芽孢杆菌。subg极限的重新评估。Nolanea导致一个改变的概念,不包括具有独特的,lageniform cheilocystidia的物种。亚甲酰亚胺一节放在子节中。Leptonia。由于整个肠虫属的系统发育尚未确定,因此以前在Nolanea被排除的几种肠虫,即E. lepiotoides、E. rhombisporum、E. subbelegans和E. velenovskyi的分类地位仍不明确。
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引用次数: 1
More smooth-spored species of Inocybe (Agaricales, Basidiomycota): type studies and 12 new species from Europe 更多的无孢子虫(真菌门,担子菌门):类型研究和来自欧洲的12个新种
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.48.03
D. Bandini, B. Oertel, U. Eberhardt
Twelve new species of Inocybe (I. adorabilis, I. comis, I. demetris, I. filiana, I. galactica, I. morganae, I. othini, I. ovilla, I. proteica, I. somae, I. suryana and I. venerabilis) are described from Europe on the basis of detailed morphological and molecular investigation. A portrait of the recently described I. ianthinopes is given. All species are smooth-spored and some pruinose only in the apical part of the stipe, and some on entire length. The new species are compared to 24 type specimens (17 characterized by at least partial ITS sequence data), all of which are described and revised here. Epitypes were selected for two species, I. hirtella and I. sindonia. Based on our studies, we confirm that I. kuehneri and I. sindonia on one hand, and I. subalbidodisca and I. ochroalba on the other, are synonyms and furthermore suggest that I. abietis is synonymous with I. catalaunica, I. exilis with I. rufobrunnea, I. hirtellarum with I. mycenoides, I. lapidicola with I. deianae, I. ochraceolutea with I. sindonia, I. stangliana with I. pelargonium, I. subrubens with I. subhirtella and I. sulfovirescens with I. langei. All of the new species are supported by phylogenetic analyses. Among the 16 previously described species accepted here, 10 are represented by types in the phylogenetic analyses and five by own collections corresponding to the type. Two species, I. eutheloides (remaining doubtful) and I. pallidolutea are only treated morphologically. In summary, we describe as new or verify the taxonomic status and provide or corroborate morphological concepts for 37 smooth-spored species of Inocybe.
在详细的形态学和分子研究的基础上,描述了欧洲12个新的Inocybe (I. adorabilis、I. comis、I. demetris、I. filiana、I. galactica、I. morganae、I. othini、I. ovilla、I. proteica、I. somae、I. suryana和I. venerabilis)。本文给出了一幅最近描述的羚羊的肖像。所有的种都是光滑的孢子和一些只在柱头部分被柔毛,和一些在整个长度上。本文将这些新种与24个模式标本(其中17个具有至少部分ITS序列数据)进行了比较,并对其进行了描述和修订。选取了hirtella和sindonia两个物种的表型。根据我们的研究,我们证实了kuehneri和sindonia是同义词,而I. subalbidodisca和I. ochroalba是同义词,并进一步提出了I. abietis与I. catalaunica, I. exilis与I. rufobrunnea, I. hirtellarum与I. mycenoides, I. lapidicola与I. deianae, I. ochraceolutea与I. sindonia, I. stangliana与I. pelargonium, I. subbrubens与I. subhirtella, I. sulfovirescens与I. langei。所有的新物种都得到了系统发育分析的支持。本文收录的16个物种中,有10个在系统发育分析中有类型代表,5个有与该类型对应的自己的集合代表。两个物种,I. eutheloides(仍有疑问)和I. pallidolutea仅在形态学上进行了处理。总之,我们描述或验证了37种Inocybe的分类地位,并提供或证实了形态学概念。
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引用次数: 4
Multigene phylogeny of the order Physarales (Myxomycetes, Amoebozoa): shedding light on the dark-spored clade 黏菌目(黏菌纲,阿米巴虫纲)的多基因系统发育:揭示暗孢子进化支
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2023.51.02
J. M. García-Martín, J. C. Zamora, C. Lado
The class Myxomycetes consists of free-living protists characterised by their complex life cycle, which includes both microscopic (amoebae, flagellates and cists) and macroscopic stages (spore-bearing fruiting bodies, sclerotia, and plasmodia). Within it, the order Physarales, with more than 450 recognised species, constitutes the largest group. Although previous studies have shown the polyphyly of some of the traditionally accepted genera, its internal phylogenetic relationships have remained uncertain so far, and together with the lack of data for some key species, it prevented any taxonomic and nomenclatural revisions. We have compiled a substantially expanded dataset in terms of both taxon sampling and molecular data, including most of the genera described to date and four unlinked DNA regions, for which we provide partial sequences: nSSU, EF-1α, α-Tub, and mtSSU, analysed through maximum likelihood and Bayesian methods. Our results confirm that the family Didymiaceae is paraphyletic to the rest of Physarales. Within Didymiaceae s.lat., the recent reinstatement of the genus Polyschismium for most species traditionally ascribed to Lepidoderma, except for the type (Ronikier et al. 2022), is further supported here, as well as the definite inclusion of the genus Mucilago in Didymium and Lepidoderma s.str. (L. tigrinum) in Diderma (Prikhodko et al. 2023). Additionally, the genus Diachea is redefined to include some species pre­viously treated in Physaraceae (Craterium spp. with true columella). Within the monophyletic family Physaraceae, most genera are recovered as polyphyletic, suggesting that they should be no longer accepted as currently defined. However, the lack of resolution of some relationships within Physaraceae prevents us from resuscitating or creating several new genera to mitigate polyphyly. Among the well-defined groups with clear molecular signatures, we propose two taxonomic and nomenclatural changes at generic level: 1) a new genus, Nannengaella, is proposed for a major clade containing Physarum globuliferum and other species with heavily calcified sporophores and, often, a true calcareous columella; 2) Lignydium is resurrected for the clade containing Fuligo muscorum. Additionally, Trichamphora is suggested as the correct name for the clade containing Physarum pezizoideum. The taxonomy and nomenclature of some provisional genera, currently synonymous with Fuligo and Physarum, are disentangled, and we provide a comprehensive and updated nomenclatural conspectus that can be used when better resolved phylogenies are obtained. In total, 22 new combinations are proposed in different genera. A provisional key to the genera of the order is also provided.
黏菌类由自由生活的原生生物组成,其特征是其复杂的生命周期,包括微观阶段(变形虫、鞭毛虫和盘根虫)和宏观阶段(含孢子的子实体、菌核和疟原虫)。其中,有超过450个已知物种的Physarales目构成了最大的类群。虽然以前的研究已经显示了一些传统上被接受的属的多聚性,但其内部的系统发育关系到目前为止仍然不确定,加上缺乏一些关键物种的数据,这阻碍了任何分类和命名的修订。我们在分类群采样和分子数据方面编译了一个大量扩展的数据集,包括迄今为止描述的大多数属和四个未链接的DNA区域,我们提供了部分序列:nSSU, EF-1α, α-Tub和mtSSU,通过最大似然和贝叶斯方法进行分析。我们的研究结果证实,Didymiaceae家族与其他绒泡属有亲缘关系。在菊科内。除了类型(ronikiier et al. 2022)外,大多数传统上属于鳞翅目的物种最近都恢复了Polyschismium属,这一观点得到了进一步的支持,同时也明确地将Mucilago属包括在Didymium和鳞翅目中。(L. tigrinum)在Diderma (Prikhodko et al. 2023)。此外,Diachea属被重新定义为包括一些以前在Physaraceae (Craterium sp . with true columella)中处理过的物种。在单系绒泡菌科中,大多数属被恢复为多系,这表明它们不应再按照目前的定义被接受。然而,由于Physaraceae中某些关系的不明确,我们无法恢复或创造几个新属来缓解多聚现象。在分子特征明确、定义明确的类群中,我们提出了在属水平上的两个分类和命名变化:1)提出了一个新的属,Nannengaella,它是一个主要分支,包含球泡绒泡菌和其他具有严重钙化孢子体的物种,通常具有真正的钙化小柱;2)木质素在含有富力菌的分支中复活。此外,Trichamphora被认为是包含绒泡菌(Physarum pezizoideum)分支的正确名称。对目前与富里戈属和绒泡菌属同义的一些临时属的分类和命名进行了澄清,并提供了一个全面和更新的命名概论,可用于更好地解决系统发育问题。总共提出了22种不同属的新组合。还提供了命令属的临时键。
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引用次数: 2
From cradle to grave? A global hotspot and new species of the genus Lobaria discovered in the Himalayas and the Hengduan Mountains 从摇篮到坟墓?喜马拉雅山脉和横断山脉发现的洛巴利亚属的全球热点和新种
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.48.04
M.X. Yang, L.S. Wang, C. Miao
In this study, the East Asian diversity of green-algal Lobaria was evaluated by applying both morphological and phylogenetic approaches. A multi-locus phylogenetic analysis of 72 green-algal Lobaria specimens was performed using a three-locus and time-calibrated species-tree approach. The analyses demonstrate that pairs of sexually and vegetatively reproducing lineages split into highly supported monophyletic clades. Taxonomically, 11 green-algal Lobaria species were identified as new to science, while 10 were previously described species. The species differentiated during the Pliocene and Pleistocene. The coincidence of paleoclimatic events with estimated dates of divergence support a bioclimatic hypothesis for species evolution in the green-algal Lobaria. Molecular phylogenies, a summary of diversity, detailed new species descriptions and geographical analyses are provided. Special recognition of species with a long evolutionary history, which merit high conservation priority, will be critical for preserving geographically restricted endemics in the Himalayas and the Hengduan Mountains, where habitat loss is driving rapid declines.
本研究采用形态学和系统发育两种方法对东亚绿藻大叶藻的多样性进行了评价。采用三位点和时间校准的物种树方法对72个绿藻大叶藻标本进行了多位点系统发育分析。分析表明,有性繁殖和营养繁殖的谱系分裂成高度支持的单系分支。在分类学上,11种绿藻类被确定为科学上的新物种,而10种是以前描述过的物种。物种分化于上新世和更新世。古气候事件与估计的分化日期的巧合支持了绿藻Lobaria物种进化的生物气候学假说。提供了分子系统发育、多样性综述、详细的新种描述和地理分析。对具有悠久进化历史的物种给予特别认可,对保护喜马拉雅山脉和横断山脉地理上受限制的特有物种至关重要,在这些地区,栖息地的丧失正在导致物种数量迅速减少。
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引用次数: 2
Fusarium and allied genera from China: species diversity and distribution 中国镰刀菌属及其近缘属:物种多样性和分布
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.48.01
M.M. Wang, P. Crous, M. Sandoval-Denis, S.L. Han, F. Liu, J.M. Liang, W. Duan, L. Cai
The genus Fusarium includes numerous important plant and human pathogens, as well as many industrially and commercially important species. During our investigation of fungal diversity in China, a total of 356 fusarioid isolates were obtained and identified from diverse diseased and healthy plants, or different environmental habitats, i.e., air, carbonatite, compost, faeces, soil and water, representing hitherto one of the most intensive sampling and identification efforts of fusarioid taxa in China. Combining morphology, multi-locus phylogeny and ecological preference, these isolates were identified as 72 species of Fusarium and allied genera, i.e., Bisifusarium (1), Fusarium (60), and Neocosmospora (11). A seven-locus dataset, comprising the 5.8S nuclear ribosomal RNA gene with the two flanking internal transcribed spacer (ITS) regions, the intergenic spacer region of the rDNA (IGS), partial translation elongation factor 1-alpha (tef1), partial calmodulin (cam), partial RNA polymerase largest subunit (rpb1), partial RNA polymerase second largest subunit (rpb2) gene regions, and partial β-tubulin (tub2), were sequenced and employed in phylogenetic analyses. A genus-level phylogenetic tree was constructed using combined tef1, rpb1, and rpb2 sequences, which confirmed the presence of four fusarioid genera among the isolates studied. Further phylogenetic analyses of two allied genera (Bisifusarium and Neocosmospora) and nine species complexes of Fusarium were separately conducted employing different multi-locus datasets, to determine relationships among closely related species. Twelve novel species were identified and described in this paper. The F. babinda species complex is herein renamed as the F. falsibabinda species complex, including descriptions of new species. Sixteen species were reported as new records from China.
镰刀菌属包括许多重要的植物和人类病原体,以及许多工业和商业上重要的物种。在中国真菌多样性调查中,从不同的病株和健康植物,或不同的环境生境,即空气、碳酸盐、堆肥、粪便、土壤和水中,共获得和鉴定了356株镰孢菌分离物,这是迄今为止中国镰孢菌分类群取样和鉴定工作最密集的一次。结合形态学、多位点系统发育和生态偏好,鉴定出镰刀菌属及其亲缘属72种,分别为Bisifusarium(1)、Fusarium(60)和Neocosmospora(11)。对5.8S核糖体RNA基因及其两个侧翼内转录间隔区(ITS)、rDNA的基因间间隔区(IGS)、部分翻译延伸因子1- α (tef1)、部分钙调蛋白(cam)、部分RNA聚合酶最大亚基(rpb1)、部分RNA聚合酶第二大亚基(rpb2)基因区和部分β-微管蛋白(tub2)等7个基因座的数据集进行测序,并用于系统发育分析。利用tef1、rpb1和rpb2组合序列构建了属水平的系统发育树,证实了所研究的分离株中存在4个镰孢属。利用不同的多位点数据,对镰刀菌两个亲缘属(Bisifusarium和Neocosmospora)和9个镰刀菌种复合体分别进行了系统发育分析,以确定亲缘种之间的关系。本文鉴定并描述了12个新种。F. babinda物种复合体在此更名为F. falsibabinda物种复合体,包括新种的描述。报告中国新记录16种。
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引用次数: 15
Re-evaluation of Sympoventuriaceae 刺蒺藜科植物的再评价
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.48.07
T. Wei, H. Zhang, X. Zeng, P. Crous, Y.L. Jiang
Sympoventuriaceae (Venturiales, Dothideomycetes) comprises genera including saprophytes, endophytes, plant pathogens, as well as important animal or human opportunistic pathogens with diverse ecologies and wide geographical distributions. Although the taxonomy of Sympoventuriaceae has been well studied, generic boundaries within the family remain poorly resolved due to the lack of type materials and molecular data. To address this issue and establish a more stable and reliable classification system in Sympoventuriaceae, we performed multi-locus phylogenetic analyses using sequence data of seven genes (SSU, ITS, LSU, act1, tub2, tef1 and rpb2) with increased taxon sampling and morphological analysis. The molecular data combined with detailed morphological studies of 143 taxa resolved 22 genera within the family, including one new genus, eight new species, five new combinations and one new name. Finally, we further investigated the evolutionary history of Sympoventuriaceae by reconstructing patterns of lifestyle diversification, indicating the ancestral state to be saprophytic, with transitions to endophytic, animal or human opportunistic and plant pathogens.
同孢菌科(Venturiales, Dothideomycetes)包括腐生菌、内生菌、植物病原体以及重要的动物或人类机会致病菌等属,生态多样,地理分布广泛。虽然同质蕨科的分类研究已经很好,但由于缺乏类型材料和分子数据,同质蕨科的属界仍然很不明确。为了解决这一问题,建立更加稳定可靠的同花菜科植物分类体系,我们利用7个基因(SSU、ITS、LSU、act1、tub2、tef1和rpb2)的序列数据进行了多位点系统发育分析,并增加了分类单元取样和形态学分析。分子数据结合143个分类群的详细形态学研究,确定该科22属,包括1个新属、8个新种、5个新组合和1个新名。最后,我们通过重建生活方式多样化的模式,进一步研究了同叶蕨科植物的进化史,表明其祖先状态是腐生的,然后过渡到内生的、动物或人类的机会性病原体和植物病原体。
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引用次数: 2
High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science 高物种丰富度的Peltigera地衣属(子囊菌科,Lecanoromycetes):在多趾龙科的dolichorhizoid和scabrososoid分支中有34种,其中24种是新发现的
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2023.51.01
N. Magain, J. Miadlikowska, B. Goffinet, T. Goward, C. J. Pardo-de La Hoz, I. Jüriado, A. Simon, J. A. Mercado‐Díaz, T. Barlow, B. Moncada, R. Lücking, A. Spielmann, L. Canêz, L.S. Wang, P. Nelson, T. Wheeler, F. Lutzoni, E. Sérusiaux
Applying molecular methods to fungi establishing lichenized associations with green algae or cyanobacteria has repeatedly revealed the existence of numerous phylogenetic taxa overlooked by classical taxonomic approaches. Here, we report taxonomical conclusions based on multiple species delimitation and validation analyses performed on an eight-locus dataset that includes world-wide representatives of the dolichorhizoid and scabrosoid clades in section Polydactylon of the genus Peltigera. Following the recommendations resulting from a consensus species delimitation approach and additional species validation analysis (BPP) performed in this study, we present a total of 25 species in the dolichorhizoid clade and nine in the scabrosoid clade, including respectively 18 and six species that are new to science and formally described. Additionally, one combination and three varieties (including two new to science) are proposed in the dolichorhizoid clade. The following 24 new species are described: P. appalachiensis, P. asiatica, P. borealis, P. borinquensis, P. chabanenkoae, P. clathrata, P. elixii, P. esslingeri, P. flabellae, P. gallowayi, P. hawaiiensis, P. holtanhartwigii, P. itatiaiae, P. hokkaidoensis, P. kukwae, P. massonii, P. mikado, P. nigriventris, P. orientalis, P. rangiferina, P. sipmanii, P. stanleyensis, P. vitikainenii and P. willdenowii; the following new varieties are introduced: P. kukwae var. phyllidiata and P. truculenta var. austroscabrosa; and the following new combination is introduced: P. hymenina var. dissecta. Each species from the dolichorhizoid and scabrosoid clades is morphologically and chemically described, illustrated, and characterised with ITS sequences. Identification keys are provided for the main biogeographic regions where species from the two clades occur. Morphological and chemical characters that are commonly used for species identification in the genus Peltigera cannot be applied to unambiguously recognise most molecularly circumscribed species, due to high variation of thalli formed by individuals within a fungal species, including the presence of distinct morphs in some cases, or low interspecific variation in others. The four commonly recognised morphospecies: P. dolichorhiza, P. neopolydactyla, P. pulverulenta and P. scabrosa in the dolichorhizoid and scabrosoid clades represent species complexes spread across multiple and often phylogenetically distantly related lineages. Geographic origin of specimens is often helpful for species recognition; however, ITS sequences are frequently required for a reliable identification.
应用分子方法建立与绿藻或蓝藻的地衣关联的真菌已经反复揭示了许多被经典分类学方法所忽视的系统发育分类群的存在。在这里,我们报告了基于多物种划分和验证分析的分类结论,这些分析基于8个位点的数据集,其中包括Peltigera属Polydactylon部分的dolichorhizoid和scabrosoid分支的全球代表。根据共识的物种划分方法和本研究中进行的额外物种验证分析(BPP)得出的建议,我们共提出了25种dolichorhizoid分支和9种scabrosoid分支,其中18种和6种分别是科学上新的和正式描述的。此外,还提出了一个组合和三个变种(包括两个科学上的新品种)。报告了24个新种:阿帕拉achiensis、p.a asiatica、p.a borealis、p.a borinquensis、p.a chabanenkoae、p.a clathrata、p.a elxii、p.a esslingeri、p.a flabellae、p.a gallowayi、p.a hatitiaiae、p.a holtanhartwigii、p.a itatiaiae、p.a hokkaidoensis、p.a kukwae、p.a massonii、p.a mikado、p.a nigriventris、p.a n orientalis、p.a rangiferina、p.a sipmanii、p.a leyensis、p.a vitikainenii和p.a willdenowii;引进了以下新品种:山核桃变种、山核桃变种;并介绍了以下新组合:解剖膜膜假单胞菌。从形态学和化学上描述,说明,并与ITS序列特征的每一个物种从dolichorhizoid和scabrosoid枝。鉴定钥匙提供了主要的生物地理区域,从两个分支的物种发生。通常用于物种识别的形态和化学特征不能用于明确识别大多数分子限定的物种,这是由于真菌物种内个体形成的菌体的高度变异,包括在某些情况下存在明显的形态,或在其他情况下存在低种间变异。四种被普遍认可的形态种:多毛蕨、新多趾蕨、粉状蕨和糙皮蕨在多毛蕨和糙皮蕨枝中代表了分布在多个系统发育上远亲的谱系中的物种复合体。标本的地理来源往往有助于物种识别;然而,通常需要ITS序列来进行可靠的识别。
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引用次数: 3
Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications 疫霉Clade 10中14个新种和7个已描述种的广泛形态和行为多样性及其进化意义
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.49.01
T. Jung, I. Milenković, T. Corcobado, T. Majek, J. Janoušek, T. Kudláček, M. Tomšovský, Z. Nagy, A. Duran, M. Tarigan, E. Sanfuentes von Stowasser, R. Singh, M. Ferreira, J. Webber, B. Scanu, N. Chi, P. Thu, M. Junaid, A. Rosmana, B. Baharuddin, T. Kuswinanti, N. Nasri, K. Kageyama, A. Hieno, H. Masuya, S. Uematsu, J. Oliva, M. Redondo, C. Maia, I. Matsiakh, V. Kramarets, R. O'Hanlon, Z. Tomić, C. Brasier, M. Horta Jung
During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil- and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenuimura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors > 175 Mya into water- and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.
通过对全球疫霉多样性的广泛调查,在智利、印度尼西亚、美国(路易斯安那州)、瑞典、乌克兰和越南的自然生态系统中发现了14个新物种,根据9个核区和3个线粒体基因区的多基因系统发育,将其划归疫霉大进化支10。进化支10现在包括三个亚进化支。亚枝10a和10b包含有非乳头状孢子囊的物种,一系列繁殖系统和主要的土壤和水生生活方式。其中包括先前描述的非洲鱼、高卢鱼和 卡拉间鱼,以及8个新种:卢多西鱼、procera鱼、伪高卢鱼、斯堪的纳维亚鱼、亚北极鱼、 tenuimura鱼、tonkinensis鱼和乌克兰鱼。与此相反,10c亚枝的所有种均具有乳头状孢子囊,具有自交生殖能力(或同卵),具有空中生活方式,包括已知的P. boehmeriae、P. gondwanensis、P. kernoviae和P. morindae,以及新种P. celebensis、P. chilensis、P. javanensis、P. multiglobulosa、P. pseudochilensis和P. pseudokernoviae。所有疫霉新种在形态特征、育种制度、基本温度和生长速率等方面的独特组合均与其他新种和近缘种不同。讨论了进化枝10的生物地理和进化历史。我们认为,这三个亚分支起源于前冈瓦纳祖先的早期分化,> 175万年,形成了水栖、土栖和空中分散的谱系,随后在其全球传播过程中经历了多次异域和同域辐射。
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引用次数: 7
Phylogeny and taxonomy of Circinotrichum, Gyrothrix, Vermiculariopsiella and other setose hyphomycetes 环孢菌、旋丝菌、蛭孢菌及其它丝孢菌的系统发育与分类
Pub Date : 1900-01-01 DOI: 10.3767/persoonia.2022.49.03
M. Hernández-Restrepo, C. Decock, M. M. Costa, P. Crous
Circinotrichum, Gyrothrix and Vermiculariopsiella represent a complex of dematiaceous, setose, saprobic hyphomycetes that are commonly collected on plant litters in tropical, subtropical to temperate climates. Multi-locus analysis (ITS, LSU, rpb2) and morphological studies revealed that Gyrothrix and Circinotrichum are polyphyletic and species belong to 10 genera grouping in three different clades within Xylariales, named Coniocessiaceae (Circinotrichum and Pirozynskiomyces gen. nov.), Microdochiaceae (Selenodriella and the resurrected genus Peglionia) and the new family Gyrothricaceae (Gyrothrix, Xenoanthostomella, Neogyrothrix gen. nov., Pseudocircinotrichum gen. nov., and Pseudoceratocladium gen. nov.). Vermiculariopsiella (Vermiculariopsiellales, Vermiculariopsiellaceae) is emended for species with setose sporodochia with simple setae (V. dichapetali, V. eucalypticola, V. immersa, V. pini, V. spiralis, V. australiensis sp. nov.) while Vermiculariopsis is resurrected and includes setose fungi with branched setae (Vs. dunni, Vs. eucalypti, Vs. eucalyptigena, Vs. lauracearum, Vs. microsperma, Vs. pediculata and Vs. castanedae sp. nov.).
Circinotrichum、Gyrothrix和Vermiculariopsiella是一种复合体,是一种通常在热带、亚热带到温带气候的植物凋落物上收集到的赤丝、刚毛、腐殖的菌丝菌。多位点分析(ITS, LSU, rpb2)和形态学研究表明,Gyrothrix和Circinotrichum是多系统的,属木蝇亚目中3个不同分支的10个属,分别命名为Coniocessiaceae (Circinotrichum和Pirozynskiomyces gen. 11 .), Microdochiaceae (Selenodriella和复活的Peglionia属)和gyrothriaceae新科(Gyrothrix, Xenoanthostomella, Neogyrothrix gen. 11 ., Pseudocircinotrichum gen. 11 .)。和Pseudoceratocladium gen. 11)。Vermiculariopsiella (Vermiculariopsiella, Vermiculariopsiellales, Vermiculariopsiellaceae)被修正为具有单一刚毛的刚毛孢子菌(V. dichapetali, V. eucalyptus, V. immersa, V. pini, V. spiralis, V. australiensis .十一月),而Vermiculariopsis被复活,包括具有分枝刚毛的刚毛真菌(Vs. dunni, Vs. eucalyptus, Vs. eucalyptus, Vs. lauracearum, Vs. microsperma, Vs. pediculata和Vs. castanedae sp.十一月)。
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引用次数: 3
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Persoonia - Molecular Phylogeny and Evolution of Fungi
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