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Interlaboratory Validation of the Human Thyroid Microtissue Assay. 人甲状腺显微组织测定的实验室间验证。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-04 DOI: 10.1093/toxsci/kfaf166
Chad Deisenroth, Briana Foley, Eda Rogers, Julia Kühnlenz, Wei Chen, Madison Feshuk, Enrica Bianchi, Josiah McKenna, Bridgett N Hill, Jessica LaRocca, Edward L LeCluyse, Nicole Kleinstreuer, Russell S Thomas, Helena T Hogberg

The EPA continues to evaluate strategies to implement new approach methods (NAMs) for screening chemicals that disrupt the thyroid endocrine system. Validation of NAMs is a critical milestone toward establishing confidence in data sources that could be used in a regulatory decision-making context. The objective of this study was to conduct an interlaboratory validation of the human thyroid microtissue assay to evaluate its relevance and reliability. In coordination with the U.S. validation authority, NICEATM, and collaboration with industry partners (LifeNet Health, Bayer Crop Science, Corteva Agrisciences), the study aims were to 1) define the study design and establish standard operating procedures, 2) conduct test method transfer, training, and within-laboratory model performance evaluation, 3) perform interlaboratory reference chemical testing and assay performance evaluation. Progress was independently monitored by a validation management team comprised of an international group of experts in thyroid physiology, in vitro test methods, and regulatory toxicology. Results indicated the thyroid microtissue model could be reliably transferred to new laboratories with reproducible effects on thyroid hormone synthesis. Interlaboratory testing of four blinded reference chemicals (three true positive, one true negative) across three independent human donors revealed consistent bioactivity across the reference set and performance metrics (dynamic range, precision, screening quality) that met acceptance criteria and shed insight into areas for improvement. In the context of a NAM-based testing strategy, a validated human thyroid microtissue assay enables direct measurement of thyroid hormone synthesis perturbations, reducing reliance on animal testing and addressing a critical mode-of-action that is of regulatory concern.

美国环保署继续评估实施新方法(NAMs)的策略,以筛选破坏甲状腺内分泌系统的化学品。NAMs的验证是建立对可用于监管决策环境的数据源的信心的关键里程碑。本研究的目的是对人甲状腺显微组织测定进行实验室间验证,以评估其相关性和可靠性。在与美国验证机构NICEATM的协调下,并与行业合作伙伴(LifeNet Health, Bayer Crop Science, Corteva Agrisciences)合作,该研究的目的是1)定义研究设计并建立标准操作程序,2)进行测试方法转移,培训和实验室内模型性能评估,3)进行实验室间参考化学测试和分析性能评估。由甲状腺生理学、体外试验方法和监管毒理学方面的国际专家组成的验证管理小组对进展进行了独立监测。结果表明,甲状腺显微组织模型可以可靠地转移到新的实验室,对甲状腺激素合成具有可重复性的影响。在三个独立的人类供体中对四种盲法参考化学品(三种真阳性,一种真阴性)进行的实验室间测试显示,整个参考集的生物活性一致,性能指标(动态范围、精度、筛选质量)符合接受标准,并揭示了有待改进的领域。在基于nama的测试策略的背景下,经过验证的人甲状腺微组织分析可以直接测量甲状腺激素合成扰动,减少对动物试验的依赖,并解决监管关注的关键作用模式。
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引用次数: 0
Nrf2 contributes to the protective effect of iron overload on thioacetamide-induced chronic liver injury in rats. Nrf2参与铁超载对硫代乙酰胺诱导的大鼠慢性肝损伤的保护作用。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-04 DOI: 10.1093/toxsci/kfaf165
Nanako Hamada, Yuri Ito, Hinata Niimi, Machi Atarashi, Mitsuru Kuwamura, Keiko Taguchi, Masayuki Yamamoto, Takeshi Izawa

Chronic liver disease (CLD) is a global health concern that progresses to liver cirrhosis and cancer. This progression can be partly replicated in rodents through experimental administration of thioacetamide (TAA). Hepatic iron accumulation is a relatively common finding in CLD patients, as excess intracellular iron promotes the progression of CLD by generating reactive oxygen species. We previously reported that dietary iron overload abrogates TAA-induced liver cirrhosis in rats, raising a possibility that hepatic iron accumulation exerts a cytoprotective function. Here we investigated the role of Kelch-like ECH-associated protein 1-NF-E2-related factor 2 (Keap1-Nrf2) system in the protective effects of iron overload in TAA-induced chronic liver injury. The suppression of TAA-induced liver cirrhosis by dietary iron overload, demonstrated in wild-type rats, was cancelled in Nrf2 knockout (KO) rats, suggesting that Nrf2 contributes to the protective effect. In wild-type rats treated with both TAA and iron, major Nrf2-target gene products, NAD(P)H quinone dehydrogenase 1 and placental glutathione S-transferase (GSTP), were specifically overexpressed in hepatocytes around the fibrotic lesions. This overexpression was accompanied by iron accumulation and expression of cytochrome P450 2E1, which converts TAA into its toxic metabolites. In addition, wild-type rats treated with TAA alone developed multiple GSTP-positive preneoplastic foci, characterized by strong activation of Nrf2, partially involved by p62-dependent selective autophagy. GSTP expression was absent in hepatocytes of Nrf2 KO rats. These results suggest that Nrf2 protects liver cirrhosis and promotes formation of preneoplastic hepatocellular nodules during TAA-induced chronic liver injury depending on the hepatic iron condition.

慢性肝病(CLD)是一个全球性的健康问题,可发展为肝硬化和肝癌。在啮齿类动物中,通过实验给药硫乙酰胺(TAA)可以部分复制这一进展。肝铁积累是CLD患者中相对常见的发现,因为过量的细胞内铁通过产生活性氧促进CLD的进展。我们之前报道过膳食铁超载可以消除taa诱导的大鼠肝硬化,这提出了肝脏铁积累发挥细胞保护功能的可能性。在此,我们研究了kelch样ech相关蛋白1- nf - e2相关因子2 (Keap1-Nrf2)系统在taa诱导的慢性肝损伤中铁超载的保护作用。在野生型大鼠中证实的饮食铁超载对taa诱导的肝硬化的抑制作用,在Nrf2敲除(KO)大鼠中被取消,这表明Nrf2参与了保护作用。在TAA和铁同时处理的野生型大鼠中,主要的nrf2靶基因产物NAD(P)H醌脱氢酶1和胎盘谷胱甘肽s转移酶(GSTP)在纤维化病变周围的肝细胞中特异性过表达。这种过表达伴随着铁积累和细胞色素P450 2E1的表达,将TAA转化为毒性代谢物。此外,TAA单独处理的野生型大鼠出现多个gstp阳性瘤前灶,其特征是Nrf2的强激活,部分参与了p62依赖性选择性自噬。Nrf2 KO大鼠肝细胞中不表达GSTP。这些结果表明Nrf2在taa诱导的慢性肝损伤中保护肝硬化并促进瘤前肝细胞结节的形成,这取决于肝铁状况。
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引用次数: 0
The OASIS Consortium: integrating multi-omics technologies to transform chemical safety assessment. OASIS联盟:整合多组学技术转变化学品安全评估。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf128
David Rouquié, Andreas Bender, Jaime Cheah, Christine E Crute, Deidre Dalmas, Jessica Ewald, Aaron Fullerton, Joshua A Harrill, Sabah Kadri, Nicole Kleinstreuer, Nynke Kramer, Jessica LaRocca, Constance A Mitchell, Srijit Seal, Shantanu Singh, Anne E Carpenter

Next Generation Risk Assessment (NGRA) aims to improve safety testing of pharmaceuticals, agrochemicals, and industrial chemicals. NGRA employs new approach methodologies, such as novel in vitro assays coupled with exposure modeling, to minimize the use of animal models, which can fail to predict specific biological effects in humans. The strategy of the 'Omics for Assessing Signatures for Integrated Safety (OASIS) Consortium combines multi-omics technologies (including transcriptomics, proteomics, and Cell Painting [high-content imaging]) and multiple cell model systems (ranging from simple cell cultures to complex organotypic models). By integrating these approaches with internal exposure estimates, the consortium aims to improve the translation between in vitro and in vivo test systems, ultimately enhancing the relevance of safety assessment to human biology. OASIS's integrated approach aims to better translate the biological effects across different chemical and biological spaces, starting with the liver as a use case. By using compounds with well-characterized in vivo and in vitro nonclinical safety and toxicology data related to adverse organ-specific effects in rats and humans, OASIS aims to create novel integrated methods that improve safety assessment while reducing animal use. Ideally, these efforts will contribute to regulatory science across sectors and support the adoption of more predictive, efficient, and cost-effective toxicological models.

下一代风险评估(NGRA)旨在改善药品、农用化学品和工业化学品的安全测试。NGRA采用新方法方法(NAMs),如新型体外试验与暴露建模相结合,以最大限度地减少动物模型的使用,因为动物模型可能无法预测人类的特定生物效应。“综合安全特征评估组学”(OASIS)联盟的策略结合了多组学技术(包括转录组学、蛋白质组学和细胞绘画(高含量成像))和多细胞模型系统(从简单的细胞培养到复杂的器官型模型)。通过将这些方法与内部暴露评估相结合,该联盟旨在改善体外和体内测试系统之间的转换,最终提高安全性评估与人类生物学的相关性。OASIS的综合方法旨在更好地将生物效应转化为不同的化学和生物空间,以肝脏为例。通过使用具有良好的体内和体外非临床安全性和毒理学数据的化合物,与大鼠和人类的不良器官特异性效应相关,OASIS旨在创建新的综合方法,提高安全性评估,同时减少动物使用。理想情况下,这些努力将有助于跨部门的监管科学,并支持采用更具预测性、更有效和更具成本效益的毒理学模型。
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引用次数: 0
Advanced cardiotoxicity profiling using field potential imaging with UHD-CMOS-MEA in human iPSC-derived cardiomyocytes. 利用UHD-CMOS-MEA的场电位成像分析人类ipsc衍生心肌细胞的高级心脏毒性。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf134
Naoki Matsuda, Nami Nagafuku, Kazuki Matsuda, Yuto Ishibashi, Tomohiko Taniguchi, Yusaku Matsushita, Norimasa Miyamoto, Takashi Yoshinaga, Ikuro Suzuki

Accurate assessment of cardiotoxicity using human induced pluripotent stem cell (iPSC)-derived cardiomyocytes is critical for ensuring drug safety during preclinical development. However, existing in vitro methodologies predominantly focus on QT interval prolongation and arrhythmia risk, often lacking the capacity to capture the complex interplay among multiple ion channels or to detect early manifestations of chronic cardiotoxicity-both of which are essential for evaluating long-term cardiac safety. Moreover, reliable prediction of pharmacological mechanisms of action remains a significant challenge. In this study, we employed field potential imaging utilizing an ultra-high-density complementary metal-oxide-semiconductor microelectrode array (MEA) comprising 236,880 electrodes distributed across a 5.9 × 5.5 mm active area. With 91.9% surface coverage by 11 μm electrodes spaced at 0.25 μm, the platform achieves near single-cell resolution across the entire cardiomyocyte monolayer. This system enabled the extraction of high-resolution electrophysiological endpoints, including the number and spatial variability of excitation origins, conduction velocity, and propagation area-thereby extending the analytical capabilities beyond those of conventional MEAs. Pharmacological testing revealed compound-specific alterations: Isoproterenol increased excitation origins, mexiletine reduced conduction velocity, and E-4031 diminished propagation area. Although these agents are well characterized, their effects were visualized with unprecedented spatiotemporal resolution, reflecting their underlying mechanisms of action. Multivariate analysis incorporating both conventional and novel endpoints enabled accurate classification of mechanisms under acute conditions. Furthermore, chronic cardiotoxicity induced by low-dose doxorubicin (0.03 μM) was sensitively detected within 24 h-earlier and at lower concentrations than previously reported-based on significant reductions in conduction velocity and propagation area. Collectively, these findings establish a high-resolution, mechanism-aware framework for in vitro cardiotoxicity profiling, offering improved predictive accuracy by capturing multi-ion channel interactions, spatial conduction abnormalities, and early signs of chronic dysfunction.

使用人类ipsc衍生的心肌细胞准确评估心脏毒性对于确保临床前开发期间的药物安全性至关重要。然而,现有的体外方法主要关注QT间期延长和心律失常风险,往往缺乏捕捉多个离子通道之间复杂相互作用或检测慢性心脏毒性早期表现的能力,而这两者对于评估长期心脏安全性至关重要。此外,对药物作用机制的可靠预测仍然是一个重大挑战。在这项研究中,我们利用超高密度互补金属氧化物半导体(CMOS)微电极阵列(MEA)采用场电位成像(FPI),该阵列由分布在5.9 × 5.5 mm有源区域的236,880个电极组成。通过11 μm间距为0.25 μm的电极,该平台具有91.9%的表面覆盖率,在整个心肌细胞单层上实现了接近单细胞的分辨率。该系统能够提取高分辨率电生理端点,包括激励源的数量和空间变异性、传导速度和传播面积,从而扩展了传统mea的分析能力。药理学测试显示化合物特异性改变:异丙肾上腺素增加兴奋来源,美西汀降低传导速度,E-4031减少传播面积。虽然这些药物的特征很好,但它们的作用以前所未有的时空分辨率可视化,反映了它们的潜在作用机制。多变量分析结合了传统和新的终点,使急性条件下的机制准确分类。此外,低剂量阿霉素(0.03 μM)诱导的慢性心脏毒性在24小时内被敏感检测到,比之前报道的浓度更早,基于传导速度和传播面积的显着降低。总的来说,这些发现为体外心脏毒性分析建立了一个高分辨率、机制意识的框架,通过捕获多离子通道相互作用、空间传导异常和慢性功能障碍的早期迹象,提高了预测的准确性。
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引用次数: 0
The PrecisionTox chemical library: creation of a chemical collection to discover evolutionary conserved biomolecular signatures of toxicity. PrecisionTox化学文库:创建化学集合以发现毒性的进化保守生物分子特征。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf126
Rubén Martínez, Juan Carlos González-Sánchez, Stavroula I Sampani, Stefan Scholz, Beate I Escher, Luise Henneberger, Julia Huchthausen, Maurice Whelan, Thomas Dickmeis, Carsten Weiss, John K Colbourne, Jonathan H Freedman

The large number and diversity of chemicals currently in use present significant challenges in assessing their human and environmental health risks due to a paucity of toxicological data. To address this shortage, high-throughput screening technologies are used to rapidly evaluate the toxicity of these chemicals. Suitable chemical libraries are crucial to evaluate the performance of these technologies and generate the cognate toxicity data. Unlike traditional chemical libraries designed for specific disease targets or receptor interactions, the PrecisionTox collection prioritizes diversity in targets and mechanisms of toxicity to ensure broad applicability in toxicity predictions to test the concept of phylotoxicology. Phylotoxicology proposes that mechanisms of toxicity are evolutionarily conserved among distantly related species. Furthermore, the application of phylotoxicology can contribute to the reduction of mammalian species in toxicity testing. Here, an approach for generating a chemical library based on chemical properties-physicochemical, biomolecular, and toxicological-as well as practical considerations, including compound availability, cost, purity, and shipping regulations, is reported. From an initial pool of over 1,500 nominees, a set of 200 chemicals was selected based on multiple criteria, including organ toxicity, environmental exposure, structure, modes of action, and toxicological relevance. Additionally, information on baseline toxicity, Absorption, Distribution, Metabolism, and Excretion properties and utility for in vitro testing was collected. This work underscores the necessity of thoughtful chemical selection to refine toxicological models, improve hazard identification, and support regulatory efforts to protect human and environmental health.

由于缺乏毒理学数据,目前使用的化学品数量众多且种类繁多,这给评估其对人类和环境健康的风险带来了重大挑战。为了解决这一不足,高通量筛选技术被用于快速评估这些化学物质的毒性。合适的化学文库对于评估这些技术的性能和生成同源毒性数据至关重要。与传统的针对特定疾病靶点或受体相互作用设计的化学文库不同,PrecisionTox收集优先考虑靶点和毒性机制的多样性,以确保毒性预测的广泛适用性,以测试系统毒理学的概念。系统毒理学提出,毒性机制在远亲物种中是进化保守的。此外,系统毒理学的应用有助于减少哺乳动物的毒性试验。本文提出了一种基于化学性质生成化学库的方法;物理化学、生物分子和毒理学;以及实际的考虑;包括化合物的可用性,成本,纯度和运输法规的报告。从最初的1500多名提名者中,根据多种标准选择了200种化学品,包括器官毒性、环境暴露、结构、MoA和毒理学相关性。此外,还收集了有关基线毒性、吸收、分布、代谢和排泄(ADME)特性和用于体外试验的效用的信息。这项工作强调了有必要进行深思熟虑的化学品选择,以完善毒理学模型,改进危害识别并支持保护人类和环境健康的监管工作。
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引用次数: 0
The differential toxicity of three different oxidized nickel compound nanoparticles and the effects of particle surface ligands in mouse alveolar macrophages. 三种不同氧化镍复合纳米颗粒对小鼠肺泡巨噬细胞的毒性差异及颗粒表面配体的影响。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf133
Rebekah L Kendall, Raymond F Hamilton, Jacob M Albright, Yu Zhao, Yingjie Hang, Chaoyun Tang, Dale Porter, Nianqiang Wu, Andrij Holian

Nickel-compound engineered nanomaterials (Ni-X NP) have diverse applications, yet their continued use raises concerns for potential health impacts upon exposure. This study investigated 3 structurally distinct Ni-X-NP-pure NiO (NCZ), NiO@Ni(OH)2 (SIG), and Ni@NiO@Ni(OH)2 (AA)-to determine how core composition and surface functionalization contribute to bioactivity. Each Ni-X NP was modified with surface moieties (-OH, -COOH, and -CH3) to assess the efficacy of surface modifications in reducing bioactivity. Ni-X NP were thoroughly characterized for structure, surface chemistry, and Ni2+ ion release in simulated lysosomal fluid. Red blood cells (RBCs) were used to evaluate the hemolytic capabilities of the nanoparticles, and primary murine alveolar macrophages (AM), and murine ex vivo alveolar macrophages (mexAM) were used to assess uptake, cytotoxicity, IL-1β release, and lysosomal membrane permeability (LMP). Results showed that NiO@Ni(OH)2 nanoparticles induced the greatest hemolysis in RBC, elicited the greatest IL-1β response in AM and mexAM, and produced the most LMP in mexAM. The Ni@NiO@Ni(OH)2 nanoparticle released the most Ni2+ and caused profound reductions in AM cell viability but failed to cause RBC hemolysis or LMP. Pure NiO nanoparticles exhibited minimal bioactivity and low Ni2+ release. Surface modification with (-COOH) or (-CH3) effectively reduced bioactivity in LMP-mediated inflammation but had minimal effect on Ni2+-driven toxicity. This study reveals that Ni-X NP bioactivity depends on both core composition and surface chemistry, and that surface functionalization reduces inflammation only when lysosomal damage is the primary driver. These findings underscore the need for careful design and evaluation of engineered nanomaterials.

镍化合物工程纳米材料(Ni-X NP)有多种应用,但它们的持续使用引起了对接触潜在健康影响的担忧。本研究研究了三种结构不同的Ni-X-NP -纯NiO (NCZ), NiO@Ni(OH)2 (SIG)和Ni@NiO@Ni(OH)2 (AA),以确定核心成分和表面功能化如何影响生物活性。每个Ni-X NP都用表面修饰(-OH, -COOH和-CH3)来评估表面修饰降低生物活性的效果。对Ni-X NP进行了结构、表面化学和模拟溶酶体液中Ni2+离子释放的全面表征。用红细胞(RBC)评估纳米颗粒的溶血能力,用原代小鼠肺泡巨噬细胞(AM)和培养的小鼠离体肺泡巨噬细胞(mexAM)评估摄取、细胞毒性、IL-1β释放和溶酶体膜通透性(LMP)。结果表明,NiO@Ni(OH)2纳米颗粒对红细胞溶血的诱导作用最大,在AM和mexAM中引起IL-1β反应最大,在mexAM中产生的LMP最多。Ni@NiO@Ni(OH)2纳米颗粒释放的Ni2+最多,导致AM细胞活力显著降低,但未引起红细胞溶血或LMP。纯NiO纳米颗粒具有最小的生物活性和低Ni2+释放。(-COOH)或(-CH3)表面修饰可有效降低lmp介导炎症的生物活性,但对Ni2+驱动的毒性影响甚微。这项研究表明,Ni-X NP的生物活性取决于核心成分和表面化学,只有当溶酶体损伤是主要驱动因素时,表面功能化才能减少炎症。这些发现强调了仔细设计和评估工程纳米材料的必要性。
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引用次数: 0
Correction to: Repeated exposure to eucalyptus wood smoke alters pulmonary gene and metabolic profiles in male Long-Evans rats. 更正:反复暴露于桉树烟雾中会改变雄性Long-Evans大鼠的肺部基因和代谢谱。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf080
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引用次数: 0
TGx-DDI (toxicogenomic DNA damage-inducing) biomarker validation: multi-site ring trial supporting regulatory use. TGx-DDI(毒物基因组DNA损伤诱导)生物标志物验证:支持监管使用的多位点环试验。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf138
Xiaotong Wang, Christine E Crute, Ashley Allemang, Jiri Aubrecht, Florence Burleson, Yasmin Dietz-Baum, Lena Dorsheimer, Albert J Fornace, Roland Frötschl, Ulrike Hemmann, Constance A Mitchell, Stefan Pfuhler, Andrew Williams, Lorreta Yun-Tien Lin, Syril Pettit, Carole L Yauk, Heng-Hong Li

Standard in vitro genotoxicity assays often suffer from low specificity, leading to irrelevant positive findings that require costly in vivo follow-up studies. The TGx-DDI (Toxicogenomic DNA Damage-Inducing) transcriptomic biomarker was developed to address this limitation by identifying DNA damage-inducing compounds through gene expression profiling in human TK6 lymphoblastoid cells. To qualify TGx-DDI as a reliable, reproducible biomarker for augmenting genotoxicity hazard assessment, a multi-site ring-trial was conducted across four laboratories using 14 blinded test compounds and standardized protocols. TK6 cells were exposed to three concentrations of each compound, followed by RNA extraction and digital nucleic acid counting using the NanoString nCounter platform. A three-pronged bioinformatics approach-Nearest Shrunken Centroid Probability Analysis, Principal Component Analysis, and Hierarchical Clustering-was used to assign DDI or non-DDI classifications. TGx-DDI demonstrated 100% sensitivity, 86% specificity, and 91% accuracy in distinguishing DDI from non-DDI compounds under validated test conditions. High interlaboratory concordance was observed (agreement coefficients ≥0.61), and transcriptomic data showed strong cross-site correlation (Pearson r > 0.84). The biomarker reproducibly classified test agents even when conducted across study sites. These results demonstrate that TGx-DDI is a robust and reproducible transcriptomic biomarker that enhances the specificity of genotoxicity testing by distinguishing biologically relevant DNA damage responses. Its integration into genotoxicity testing strategies can support regulatory decision-making, reduce unnecessary animal use, and improve the assessment of human health risks.

标准的体外遗传毒性检测通常特异性较低,导致不相关的阳性结果,需要昂贵的体内随访研究。TGx-DDI(毒物基因组DNA损伤诱导)转录组生物标志物是为了解决这一限制而开发的,通过人类TK6淋巴母细胞样细胞的基因表达谱鉴定DNA损伤诱导化合物。为了证明TGx-DDI是一种可靠的、可重复的生物标志物,可用于增强遗传毒性危害评估,研究人员在4个实验室进行了一项多地点环试验,使用14种盲法测试化合物和标准化方案。将TK6细胞暴露于每种化合物的三种浓度下,然后使用NanoString nCounter®平台进行RNA提取和数字核酸计数。一种三管齐下的生物信息学方法——最近缩小质心概率分析、主成分分析和分层聚类——被用于分配DDI或非DDI分类。在验证的测试条件下,TGx-DDI在区分DDI和非DDI化合物方面表现出100%的灵敏度,86%的特异性和91%的准确性。实验室间高度一致(一致系数≥0.61),转录组学数据显示出很强的跨位点相关性(Pearson r = 0.84)。即使在跨研究地点进行试验时,生物标志物也可重复分类试验剂。这些结果表明,TGx-DDI是一个强大的、可重复的转录组生物标志物,通过区分生物学相关的DNA损伤反应,增强了遗传毒性测试的特异性。将其纳入遗传毒性测试战略可以支持监管决策,减少不必要的动物使用,并改进对人类健康风险的评估。
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引用次数: 0
High-content toxicological profiling of 87 compounds using a 3D mouse mini-testis model: a New Approach Methodology (NAM) for prioritizing male reproductive toxicants. 87种化合物的高含量毒理学分析使用3D小鼠迷你睾丸模型:一个新的方法方法(NAM)优先考虑男性生殖毒物。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf136
Lei Yin, Jamie Chelin Hu, Menghang Xia, Xiaozhong John Yu

Environmental exposure to industrial chemicals, endocrine disruptors, and pharmaceuticals has been increasingly linked to the global decline in male reproductive health. To address the urgent need for efficient and mechanistically informed toxicity screening, we developed a high-throughput screening, high-content analysis (HCA) platform using a 3D in vitro mini-testis model. This system was used to evaluate 87 structurally diverse compounds from the National Toxicology Program chemical library. The model incorporates murine-derived spermatogonia, Sertoli, and Leydig cells embedded in an extracellular matrix, providing a physiologically relevant environment for mechanistic toxicology. Each compound was tested across 10 phenotypic endpoints, including nuclear morphology, cytoskeletal integrity (F-actin), DNA damage (γH2AX), and cell viability by using high-content imaging. Quantitative Points of Departure (PODs) were calculated and integrated into a High-Content Assay Index. Toxicological Priority Index (ToxPi) scores, derived from the PODs, enabled compound ranking and clustering. Compared with existing in vivo reproductive toxicity data, the 3D model demonstrated 91.5% sensitivity, 93.8% specificity, and 93.6% concordance (n = 64 compounds). Notably, 22 compounds lacking reproductive toxicity data were identified as potentially reproductive toxicants. Mechanistic analyses revealed that nuclear morphology, F-actin intensity, and γH2AX were the most sensitive indicators of reproductive toxicity. Cluster and category-level analysis showed that flame retardants and pesticides ranked highest in toxicity. The integration of multi-parametric data via ToxPi facilitated high-resolution chemical prioritization. Given current ethical and technical challenges in sourcing human testicular tissue or differentiating stem cells into testicular cell types, murine cells provide a reproducible and practical alternative for complex multicellular testis modeling. Our results demonstrate that the HCA-integrated 3D mini-testis model offers a robust, scalable, and mechanistically insightful platform for male reproductive toxicity screening, supporting its adoption as New Approach Methodologies aligned with regulatory and ethical testing goals.

工业化学品、内分泌干扰物和药品的环境暴露与全球男性生殖健康下降的关系日益密切。为了满足对高效、机械的毒性筛选的迫切需求,我们开发了一种使用3D体外迷你睾丸模型的高通量、高含量筛选(HTS/HCA)平台。该系统用于评价来自国家毒理学计划(NTP)化学文库的87种结构多样的化合物。该模型将鼠源性精原细胞、支持细胞和间质细胞嵌入细胞外基质中,为机械毒理学提供了生理相关环境。每种化合物都通过10个表型端点进行测试,包括核形态、细胞骨架完整性(F-actin)、DNA损伤(γH2AX)和细胞活力(通过高含量成像)。计算定量偏离点(pod)并将其整合到高含量分析指数(HCAI)中。毒理学优先指数(ToxPi)评分,从pod得出,使化合物排序和聚类。与现有的体内生殖毒性数据相比,3D模型的敏感性为91.5%,特异性为93.8%,一致性为93.6% (n = 64个化合物)。值得注意的是,22种缺乏生殖毒性数据的化合物被确定为潜在的生殖毒性物质。机制分析表明,核形态、F-actin强度和γ - h2ax是生殖毒性最敏感的指标。聚类和类别水平分析表明,阻燃剂和农药的毒性最高。通过ToxPi集成的多参数数据促进了高分辨率的化学优先级。鉴于目前在寻找人类睾丸组织或将干细胞分化为睾丸细胞类型方面面临的伦理和技术挑战,小鼠细胞为复杂的多细胞睾丸建模提供了可复制和实用的替代方案。我们的研究结果表明,hca集成的3D迷你睾丸模型为男性生殖毒性筛查提供了一个强大的、可扩展的、有机械洞察力的平台,支持其作为符合监管和伦理测试目标的新方法方法(NAMs)的采用。
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引用次数: 0
Zebrafish cell lines and high-throughput transcriptomics: advancing in vitro and bioinformatics methods for supporting environmental risk assessment. 斑马鱼细胞系和高通量转录组学:支持环境风险评估的体外和生物信息学方法的进展。
IF 4.1 3区 医学 Q2 TOXICOLOGY Pub Date : 2025-12-01 DOI: 10.1093/toxsci/kfaf127
Peter G Schumann, Joseph Bundy, Derik E Haggard, Logan Everett, Joshua A Harrill, Felix Harris, David Ryoo, Jacob Collins, Claudia Rivetti, Bruno Campos, Geoff Hodges, Carlie A LaLone

Historic animal-based toxicity testing methods cannot keep pace with the need for prioritizing new and existing chemicals for comprehensive risk assessment. New approach methodologies such as high-throughput in vitro transcriptomics screening have emerged to address this challenge. However, most in vitro methods were developed using mammalian cell lines, including human, and may not adequately represent environmental species, potentially limiting the utility of this methodology for supporting environmental risk assessment. The objective of this study was to evaluate whether zebrafish cell lines can generate biologically meaningful chemical effects data in a high-throughput transcriptomics pipeline that is protective of toxicologically relevant aquatic apical endpoints. Forty-two test chemicals were screened in 2 commercially available zebrafish cell lines (ZFL liver and ZEM2S embryonic fibroblast) using the TempO-Seq zS1500+ platform. Transcriptomic points-of-departure (tPODs) were derived using 2 methods: Gene-level analysis (tPODgenes) with BMDExpress software and biological pathway-altering concentrations (BPACs/tPODsignatures) from signature-based dose-response analysis. When converted to predicted external water concentrations using quantitative in vitro-in vivo extrapolation models, tPODs were generally protective of aquatic in vivo endpoints from the ECOTOX Knowledgebase. Differential gene expression and biological pathway analysis revealed potential cell-type-specific effects for several chemicals, highlighting the value of using multiple cell types for capturing tissue-specific responses. Lastly, the biological pathway information was used to extrapolate the chemical effects data across species through an integration of protein-protein interaction network analysis and the Sequence Alignment to Predict Across Species Susceptibility tool, which has significant implications for improving the ecological relevance of these methods.

传统的基于动物的毒性测试方法无法跟上对新化学品和现有化学品进行综合风险评估的优先次序的需要。新的方法,如高通量体外转录组学筛选已经出现,以解决这一挑战。然而,大多数体外方法是使用哺乳动物细胞系(包括人类)开发的,可能不能充分代表环境物种,这可能限制了该方法在支持环境风险评估方面的效用。本研究的目的是评估斑马鱼细胞系是否可以在高通量转录组学管道中产生具有生物学意义的化学效应数据,从而保护毒理学相关的水生根尖端点。使用TempO-Seq zS1500+平台,在两种市售的斑马鱼细胞系(ZFL肝和ZEM2S胚胎成纤维细胞)中筛选了42种测试化学物质。转录组起始点(tpod)通过两种方法获得:使用bmexpress软件进行基因水平分析(tPODgenes)和基于特征的剂量-反应分析(BPACs/tPODsignatures)的生物途径改变浓度。当使用定量的体外外推模型转换为预测的外部水浓度时,tpod通常可以保护ECOTOX知识库中水生生物的体内终点。差异基因表达和生物通路分析揭示了几种化学物质潜在的细胞类型特异性作用,强调了使用多种细胞类型来捕获组织特异性反应的价值。最后,通过整合蛋白质-蛋白质相互作用网络分析和序列比对预测跨物种敏感性工具,利用生物学途径信息推断出物种间的化学效应数据,这对提高这些方法的生态相关性具有重要意义。
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Toxicological Sciences
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