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Stratification of immunotherapy responses by adaptive immune receptor repertoires. 适应性免疫受体对免疫治疗反应的分层。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-20 DOI: 10.1016/j.molmed.2025.12.007
Bálint Biró, Mara A Llamas-Covarrubias, Ayan Sengupta, Daron M Standley

A growing number of diseases are now treated with immunotherapies, which consist of interventions that suppress or stimulate the patient's immune system. Because individual humans express a unique repertoire of adaptive immune receptors, the efficacy of immunotherapies typically varies from person to person. Next generation sequencing of adaptive immune receptor repertoires, combined with machine learning or statistical analysis, has emerged as a sensitive means of stratifying patients based on their immune status, particularly in the fields of cancer and autoimmune disease therapy. The sensitivity and specificity of these approaches rely heavily on the methods of deriving features from each individual repertoire. Here, we review recent trends in stratification methods and highlight their limitations, including the need for data standardization and sharing.

越来越多的疾病现在用免疫疗法来治疗,这包括抑制或刺激患者免疫系统的干预措施。由于个体表达独特的适应性免疫受体,免疫疗法的效果通常因人而异。下一代适应性免疫受体序列测序,结合机器学习或统计分析,已经成为根据患者的免疫状态对患者进行分层的敏感手段,特别是在癌症和自身免疫性疾病治疗领域。这些方法的敏感性和特异性在很大程度上依赖于从每个单独的曲目中提取特征的方法。在这里,我们回顾了分层方法的最新趋势,并强调了它们的局限性,包括对数据标准化和共享的需求。
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引用次数: 0
Mapping clinical CAR-T cells: insights from scRNA-seq. 绘制临床CAR-T细胞:来自scRNA-seq的见解。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-15 DOI: 10.1016/j.molmed.2025.12.006
Michaela M Meehl, Meghan B Ward, Giedre Krenciute

Single cell RNA sequencing (scRNA-seq) has revolutionized the field of biology and become the most powerful tool for evaluating transcriptional profiles of a biological sample. Given its power, it is widely utilized across multiple disciplines, including chimeric antigen receptor (CAR)-T cell therapy. In this review, we provide a comprehensive summary of published studies that have used scRNA-seq to analyze clinical CAR-T cells, focusing on T cell exhaustion, cytotoxicity, memory, expansion, clonal diversity, and cytokines. We also highlight findings on activation, CD4+/CD8+ ratios, proliferation, regulatory T cells (Tregs) and metabolism, and their relevance to patient response across diseases. Finally, we discuss the limitations and future directions of scRNA-seq in CAR-T cell research, providing key insights for clinicians and researchers.

单细胞RNA测序(scRNA-seq)已经彻底改变了生物学领域,成为评估生物样本转录谱的最强大工具。鉴于其强大的功能,它被广泛应用于多个学科,包括嵌合抗原受体(CAR)-T细胞治疗。在这篇综述中,我们全面总结了已发表的使用scRNA-seq分析临床CAR-T细胞的研究,重点是T细胞衰竭、细胞毒性、记忆、扩增、克隆多样性和细胞因子。我们还重点介绍了激活、CD4+/CD8+比率、增殖、调节性T细胞(Tregs)和代谢的研究结果,以及它们与患者对疾病反应的相关性。最后,我们讨论了scRNA-seq在CAR-T细胞研究中的局限性和未来方向,为临床医生和研究人员提供了关键的见解。
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引用次数: 0
Hypoxia in MASLD: a spatial determinant of the pathogenesis. MASLD的缺氧:发病机制的空间决定因素。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-15 DOI: 10.1016/j.molmed.2025.12.008
Isabel Fuster-Martínez, Vanesa Bernal-Monterde, Guillaume Bidault, José M Arbonés-Mainar, Antonio Vidal-Puig

The liver has a unique microarchitecture, with hepatic sinusoids receiving blood from the portal vein and hepatic artery and draining into the central vein. This flow establishes an oxygen gradient along the sinusoids critical for defining the liver zonation. In metabolic dysfunction-associated steatotic liver disease (MASLD), fat accumulation and fibrosis disrupt this architecture, contributing to localised hypoxia. Mounting evidence implicates hypoxia in MASLD, including the activation of canonical hypoxia sensors such as hypoxia-inducible factors. Moreover, chronic intermittent hypoxia, characteristic of obstructive sleep apnoea (OSA), is epidemiologically and mechanistically associated with MASLD progression. This review examines the intrahepatic oxygen dynamics, the interplay between OSA and MASLD, and molecular responses to hypoxia, proposing intrahepatic hypoxia as a spatial determinant of liver injury.

肝脏具有独特的微结构,肝窦接收来自门静脉和肝动脉的血液并汇入中央静脉。这种血流沿正窦区形成氧梯度,这对确定肝分区至关重要。在代谢功能障碍相关的脂肪变性肝病(MASLD)中,脂肪堆积和纤维化破坏了这种结构,导致局部缺氧。越来越多的证据表明,MASLD中存在缺氧,包括缺氧诱导因子等典型缺氧传感器的激活。此外,慢性间歇性缺氧,阻塞性睡眠呼吸暂停(OSA)的特征,在流行病学和机制上与MASLD进展相关。本文综述了肝内氧动力学、OSA和MASLD之间的相互作用以及对缺氧的分子反应,提出肝内缺氧是肝损伤的空间决定因素。
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引用次数: 0
Polycystic kidney disease. 多囊肾病。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-07 DOI: 10.1016/j.molmed.2025.12.004
Sara Clerici, Alessandra Boletta
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引用次数: 0
Major depressive disorder: susceptibility, underlying mechanisms, and emerging therapies. 重度抑郁症:易感性、潜在机制和新兴疗法。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-02 DOI: 10.1016/j.molmed.2025.12.003
Anna Onisiforou, Morfeas Koumas, Panos Zanos
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引用次数: 0
Vascular cell types in progeria: victims or villains? 早衰症的血管细胞类型:受害者还是恶棍?
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-04-16 DOI: 10.1016/j.molmed.2025.03.005
Ignacio Benedicto, Magda R Hamczyk, Beatriz Dorado, Vicente Andrés

Hutchinson-Gilford progeria syndrome (HGPS) is an ultrarare genetic disease caused by progerin, a broadly expressed mutant variant of lamin A protein that accelerates aging and leads to premature death typically in adolescence. Progerin affects many organs and reproduces many characteristics of physiological aging, with the main cause of death in HGPS being atherosclerotic cardiovascular disease (CVD). Due to the rarity of HGPS, advances in understanding the disease and progress toward new therapeutic approaches are crucially dependent on preclinical models. We discuss recent research developments from a variety of HGPS experimental systems, with a special focus on in vivo studies of the role of vascular smooth muscle cells (VSMCs) and endothelial cells (ECs) that are key players in atherosclerosis.

哈钦森-吉尔福德早衰综合征(HGPS)是一种由早衰蛋白引起的罕见遗传疾病,早衰蛋白是一种广泛表达的层合蛋白a的突变变体,它加速衰老,通常在青春期导致过早死亡。早衰蛋白影响许多器官并再现生理性衰老的许多特征,HGPS的主要死亡原因是动脉粥样硬化性心血管疾病(CVD)。由于HGPS罕见,了解疾病的进展和新治疗方法的进展至关重要地依赖于临床前模型。我们讨论了各种HGPS实验系统的最新研究进展,特别关注血管平滑肌细胞(VSMCs)和内皮细胞(ECs)在动脉粥样硬化中的关键作用的体内研究。
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引用次数: 0
AAV vectors: an emerging strategy for chronic pain management. AAV载体:慢性疼痛管理的新兴策略。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-09-18 DOI: 10.1016/j.molmed.2025.08.008
Romina Nassini, Martina Chieca, Matilde Marini, Lorenzo Landini, Francesco De Logu

Chronic pain affects millions of people worldwide and represents a crucial public health issue. A growing body of preclinical evidence suggests that adeno-associated virus (AAV) vectors are a powerful gene therapy tool for chronic pain management. We systematically summarize how AAV vectors, by targeting molecular pain pathways in neuronal and non-neuronal cells, may offer precise and sustained pain relief. We provide an overview of the latest findings and emerging concepts in this area, and discuss preclinical innovations in neuropathic, inflammatory and cancer-related pain. We also present clinical data on pain modulation by AAV in osteoarthritis (OA) patients. Finally, we provide a thorough analysis of key concerns about AAV therapy, including potential immune responses, toxicity, and adverse effects.

慢性疼痛影响着全世界数百万人,是一个至关重要的公共卫生问题。越来越多的临床前证据表明,腺相关病毒(AAV)载体是慢性疼痛管理的强大基因治疗工具。我们系统地总结了AAV载体如何通过靶向神经元和非神经元细胞中的分子疼痛途径,提供精确和持续的疼痛缓解。我们概述了这一领域的最新发现和新兴概念,并讨论了神经性、炎症性和癌症相关疼痛的临床前创新。我们还提供了骨关节炎(OA)患者的AAV疼痛调节的临床数据。最后,我们对AAV治疗的关键问题进行了全面分析,包括潜在的免疫反应、毒性和不良反应。
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引用次数: 0
Transcriptional landscape of skeletal muscle in cancer patients. 癌症患者骨骼肌的转录图谱。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-10-31 DOI: 10.1016/j.molmed.2025.10.004
Samet Agca, Serkan Kir

Bhatt et al. have identified two RNAome-based skeletal muscle subtypes in cancer cachexia. The first subtype is cachexia associated with weight and muscle loss, fiber atrophy, and shortened survival. Furthermore, this subtype has dysregulated post-transcriptional networks involving hub long noncoding (lnc)RNAs, neuronal, immune, and metabolic pathways. The study highlights new biomarkers and network-targeted interventions.

Bhatt等人在癌症恶病质中发现了两种基于rnaome的骨骼肌亚型。第一种亚型是恶病质,与体重和肌肉减少、纤维萎缩和生存期缩短有关。此外,该亚型具有涉及中枢长非编码(lnc) rna、神经元、免疫和代谢途径的转录后网络失调。该研究强调了新的生物标志物和网络靶向干预措施。
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引用次数: 0
10 years in lupus - progress, but not enough. 10年的狼疮,有进展,但还不够。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-09 DOI: 10.1016/j.molmed.2025.06.003
Eric F Morand, Sarah A Jones

Systemic lupus erythematosus (SLE, lupus) remains an enigmatic diagnosis with a poor prognosis. SLE is characterised by complex biology and heterogeneous clinical manifestations that create a major hurdle to the approval of new medicines and contribute to multiple trial failures. While the pace of research has accelerated, drugs currently in development target a limited spectrum of mechanisms, tempering hope that any will be a panacea. The pace of translation lags behind advances in basic science, and this continues to cost patients dearly. The unacceptable metabolic adverse effects of glucocorticoids have rightly driven treatment guidelines towards ever more stringent dose-reduction targets, and new research is ongoing to develop a safe and reliable glucocorticoid replacement that will be active across a breadth of inflammatory pathways.

系统性红斑狼疮(SLE,狼疮)仍然是一个难以理解的诊断与预后差。SLE的特点是复杂的生物学和异质性的临床表现,这对新药的批准造成了重大障碍,并导致多次试验失败。虽然研究的步伐已经加快,但目前正在开发的药物针对的是有限的机制,这使人们对任何一种药物都能成为万灵药的希望变得渺茫。翻译的速度落后于基础科学的进步,这继续使患者付出高昂的代价。糖皮质激素不可接受的代谢不良反应正确地推动了治疗指南朝着更严格的剂量减少目标发展,并且正在进行新的研究,以开发一种安全可靠的糖皮质激素替代品,这种替代品将在广泛的炎症途径中发挥作用。
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引用次数: 0
Decidual macrophages as therapeutic targets in preterm labour. 巨噬细胞作为早产的治疗靶点。
IF 13.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-06-16 DOI: 10.1016/j.molmed.2025.05.013
Emilie O Paterson, Daniel J Short, Victoria Male

The initiation of labour in humans remains poorly understood, although there is mounting evidence for a role for decidual macrophages. These may trigger labour by promoting a proinflammatory state, thereby modulating progesterone signalling and weakening fetal membranes. Preclinical work targeting macrophages therapeutically shows promise in preventing preterm labour, underscoring their significance in this process.

尽管有越来越多的证据表明蜕膜巨噬细胞的作用,但人类分娩的开始仍然知之甚少。这些可能通过促进促炎状态触发分娩,从而调节黄体酮信号并削弱胎膜。针对巨噬细胞的临床前治疗工作显示出预防早产的希望,强调了它们在这一过程中的重要性。
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Trends in molecular medicine
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