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Emergence of a Novel CRESS-DNA Virus Associated with Swine Reproductive Failure in China. 一种与中国猪繁殖失败相关的新型CRESS-DNA病毒的出现。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-02-06 eCollection Date: 2026-01-01 DOI: 10.1155/tbed/4053892
Xianhui Liu, Yixuan Li, Jian Xiao, Xinming Zhang, Yilong Liu, Zan Li, Lin Wang, Leyi Zhang, Yanling Liu, Pengshuai Liang, Zheng Xu, Yebing Liu, Changxu Song

The continuous emergence of circular Rep-encoding single-stranded (CRESS) DNA viruses across diverse hosts has been closely associated with the occurrence of severe diseases. Four circoviruses within the genus Circovirus have been identified in pigs, including porcine circovirus Type 1 (PCV1), PCV2, PCV3, PCV4, and PCV5. In late 2021, a large pig farm experienced an outbreak of reproductive disorders that were undiagnosed by standard tests. Subsequent viral metagenomic analysis of stillborn piglets identified a novel single-stranded circular DNA virus, designated porcine megalocircovirus (PMCV). PMCV has a large genome of 9426 nt and encodes nine open reading frames. Biochemical analyses of Rep confirm PMCV as a CRESS DNA virus. However, PMCV Rep showed low amino acid sequence identities to the four PCV species and several human CRESS DNA viruses, with the highest identity of 23.6% to PCV4 Rep. The genetic evolutionary tree indicates that PMCV belongs to an unknown family of the CRESS DNA viruses. The positive detection rate for PMCV in tested samples was 24% (30/125), while the positive rate regarding pig farms was 41.18% (14/34) in China. The emergence of PMCV warrants further investigation.

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引用次数: 0
Engineered VP1 mRNA Vaccine Induces Immunity and Complete Protection Against Feline Calicivirus in Cats. vp1mrna工程化疫苗诱导猫对猫杯状病毒的免疫和完全保护
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-02-06 eCollection Date: 2026-01-01 DOI: 10.1155/tbed/9499266
Meng-Di Zhang, Zhuo-Fang Xie, Xin-Hong Li, Wei Huang, Qian-Yu Qian, Hong-Tao Cao, Ji-Wei Liu, Ya-Qing Zhang, Bin Wang, Yu Qin, Fu-Shan Shi, Jian-Bin Tang, Yao-Wei Huang, Yong-Le Yang

Feline calicivirus (FCV) is a major pathogen of upper respiratory tract diseases in cats, posing a significant threat to feline health. While current FCV preventive measures rely primarily on traditional vaccines, messenger RNA (mRNA) vaccines have emerged as a promising alternative, offering high efficacy, safety, rapid clinical development, and potential for fast, cost-efficient production. In this study, we designed a modified nucleotide sequence with a 124-amino acid deletion at a position in the region of the FCV-VP1 protein as an immunogen. The plasmid encoding the codon-optimized VP1 sequence was constructed, and VP1-mRNA was generated by in vitro transcription (IVT) and capping. After transfection into BHK-21 cells, immunofluorescence assay (IFA) and WB confirmed successful FCV-VP1 expression. Subsequently, the mRNA was encapsulated into lipid nanoparticles (LNPs) to prepare the LNP-VP1-mRNA vaccine. Characterization analysis revealed a uniform particle size distribution (polydispersity index [PDI] = 0.169) and a stable surface charge (zeta potential = -1.67 mV). A prime-boost immunization strategy was employed, which involved two intramuscular injections to immunize BALB/c mice or cats with the LNP-VP1-mRNA vaccine. ELISA analysis demonstrated that the vaccine elicited elevated levels of anti-FCV IgG and neutralizing antibodies in a dose-dependent manner, accompanied by the secretion of cytokines including IFN-β, IFN-γ, IL-4, and IL-6. Importantly, the VP1 mRNA vaccine provided complete protection against FCV challenge in cats, without the typical clinical signs and with a 100% survival rate. Our results indicate that the LNP-VP1-mRNA vaccine is a promising candidate for combating FCV infection.

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引用次数: 0
Bandavirus dabieense Isolated From a Wild Leopard Cat (Prionailurus bengalensis euptilura) in the Republic of Korea. 从韩国野生豹猫(Prionailurus bengalensis euptilura)中分离出的班达病毒。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-02-03 eCollection Date: 2026-01-01 DOI: 10.1155/tbed/4160320
Hye-Ryung Byun, Su-Jin Chae, Seong-Ryeong Ji, Hak Sub Shin, Jun-Gu Kang, Hyesung Jeong, Suwoong Lee, Joon-Seok Chae

Bandavirus dabieense severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging tick-borne zoonotic virus that causes severe febrile illness and high fatality rates in people. SFTSV is endemic to East Asia, notably in the Republic of Korea (ROK), Japan, and China. Although several studies have reported SFTSV infections in domestic cats (Felis catus), reports of SFTSV in wild felids have been lacking. Previous serological analyses suggest exposure to SFTSV in various wildlife species. However, the clinical outcomes and the role of these animals in SFTSV transmission remain unclear. This study reports the first isolation and whole-genome analysis of SFTSV from a wild leopard cat (Prionailurus bengalensis euptilura) in the ROK. SFTSV was first detected in spleen tissue using real-time PCR, successfully isolated in Vero E6 cells, and confirmed with nested PCR and immunofluorescence assay (IFA). Phylogenetic analysis of whole-genome sequencing, including the L, M, and S segments, revealed that SFTSV from the leopard cat strain, belonging to sub-genotype B-1, showed 99.81%-99.94% nucleotide and 99.65%-99.95% of amino acid identity to previously reported strains from domestic cat and humans in the ROK. Notably, three distinct amino acid mutations, C12Y and H518Q in the M segment and F118S in the S segment, were unique to the leopard cat strain. While no remarkable gross pathological lesions were observed, the absence of other apparent causes of death suggests that SFTSV infection may have contributed. This study provides the first confirmed case of natural SFTSV infection with successful virus isolation from a wild leopard cat in the ROK. Our findings underscore the value of wild felids as ecological indicators of SFTSV circulation across diverse host within tick-borne transmission systems. These results highlight the importance of continued one health based surveillance to better understand the environmental and ecological contexts in which SFTSV persists.

Bandavirus dabiense重症发热伴血小板减少综合征病毒(SFTSV)是一种新出现的蜱传人畜共患病毒,可在人群中引起严重发热性疾病和高死亡率。SFTSV是东亚的地方病,特别是在大韩民国、日本和中国。虽然有几项研究报道了家猫(Felis catus)感染SFTSV,但在野生猫科动物中缺乏SFTSV的报道。以前的血清学分析表明,SFTSV暴露于各种野生动物物种。然而,临床结果和这些动物在SFTSV传播中的作用仍不清楚。本研究报道了韩国野生豹猫(Prionailurus bengalensis euptilura)中SFTSV的首次分离和全基因组分析。采用实时荧光定量PCR技术首次在脾脏组织中检测到SFTSV病毒,并在Vero E6细胞中成功分离,并采用巢式PCR和免疫荧光法(IFA)进行证实。全基因组测序(L、M和S片段)系统发育分析显示,该毒株属于B-1亚基因型,与韩国家猫和人类的SFTSV毒株核苷酸和氨基酸的同源性分别为99.81% ~ 99.94%和99.65% ~ 99.95%。值得注意的是,三个不同的氨基酸突变,M段的C12Y和H518Q, S段的F118S,是豹猫菌株所特有的。虽然没有观察到明显的大体病理病变,但没有其他明显的死亡原因表明SFTSV感染可能起了作用。本研究从韩国野生豹猫中成功分离出SFTSV自然感染的首例确诊病例。我们的研究结果强调了野生野地作为蜱传传播系统中不同宿主间SFTSV传播的生态指标的价值。这些结果强调了继续开展基于单一健康的监测的重要性,以便更好地了解SFTSV持续存在的环境和生态背景。
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引用次数: 0
Establishment and Application of a Novel Protein Microarray for Serological Detection and Differentiation of Senecavirus A. 新型塞内卡病毒a血清学检测与分化蛋白芯片的建立与应用。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-02-03 eCollection Date: 2026-01-01 DOI: 10.1155/tbed/5543555
Dexin Li, Junhua Deng, Zenglin Wang, Yunjing Zhang, Yufang Li, Liying Hao, Kegong Tian, Xiangdong Li

Senecavirus A (SVA) is an emerging swine pathogen that causes vesicular disease, which presents clinically indistinguishable signs from other vesicular diseases. To enable differentiation of infected from vaccinated animals (DIVA), we developed a novel protein microarray for dual serological detection of antibodies against SVA structural (VP2-VP3-VP1) and non-structural (3AB-3C) proteins. The assay was based on two novel His-tagged tandem antigens, designed from immunodominant B-cell epitopes, which were expressed in Escherichia coli (E. coli), purified, and spotted onto a poly(dimethylsiloxane) (PDMS) substrate. Results were quantified by spot gray values to calculate sample-to-positive (S/P) ratios, with cut-off values set at S/P ≥0.651 for VP2-VP3-VP1 and S/P ≥0.607 for 3AB-3C. The microarray successfully differentiated inactivated-vaccine-immunized animals (positive only for VP2-VP3-VP1) from live SVA-challenged animals (positive for both antigens). In live SVA-challenged pigs, seroconversion to the structural protein antigen VP2-VP3-VP1 occurred 4 days earlier than the non-structural protein antigen 3AB-3C, identifying it as a sensitive early diagnostic marker. Clinical validation demonstrated 97.5% concordance with the virus neutralization test (VNT), confirming the microarray as a reliable, high-throughput tool for DIVA serological testing.

塞内卡病毒A (SVA)是一种引起水疱病的新型猪病原体,其临床表现与其他水疱病难以区分。为了使感染动物与接种动物(DIVA)区分开来,我们开发了一种新的蛋白质芯片,用于双重血清学检测SVA结构(VP2-VP3-VP1)和非结构(3AB-3C)蛋白的抗体。该检测基于两种新的his标记串联抗原,从免疫优势b细胞表位设计,在大肠杆菌(E. coli)中表达,纯化并标记在聚二甲基硅氧烷(PDMS)底物上。结果通过斑点灰度值量化计算样本阳性(S/P)比,截断值为VP2-VP3-VP1的S/P≥0.651,3AB-3C的S/P≥0.607。该芯片成功地将灭活疫苗免疫动物(仅对VP2-VP3-VP1阳性)与活的sva攻击动物(两种抗原均阳性)区分开来。在活的sva攻击猪中,向结构蛋白抗原VP2-VP3-VP1的血清转化比非结构蛋白抗原3AB-3C早4天,使其成为敏感的早期诊断标志物。临床验证与病毒中和试验(VNT)的一致性为97.5%,证实微阵列是一种可靠的、高通量的DIVA血清学检测工具。
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引用次数: 0
Natural Products as Potential Resource Library for Control of Major Swine Enteric Viruses 天然产物作为主要猪肠道病毒控制的潜在资源库。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-02-03 DOI: 10.1155/tbed/4368881
Jialu Zhang, Yuqian Liu, Shuying Ren, Zhouyuan Wang, Yunxia Li, Lianci Peng, Rendong Fang

Major swine enteric viruses (SEVs), including porcine epidemic diarrhea virus (PEDV), porcine deltacoronavirus (PDCoV), transmissible gastroenteritis virus (TGEV), swine acute diarrhea syndrome coronavirus (SADS-CoV), and porcine rotavirus (PoRV), cause severe gastrointestinal diseases in pigs, leading to huge economic losses to the swine industry around the world. In the absence of specific drugs and vaccines for controlling SEVs in the pig production, this review summarizes the inhibitory effects of natural products against these major porcine enteric viruses. Specifically, it focuses on recent studies regarding the anti-SEVS activities of traditional Chinese medicine (TCM) compound formulas, herbal extracts, pharmaceutical monomers, and natural metabolites. The review elaborates on how these natural products exert antiviral activities against SEVs, highlighting their potential as alternative or complementary agents for controlling porcine enteric viral infections. Overall, this work provides a comprehensive overview of the research progress in natural products against porcine enteric viruses and demonstrates the new strategies for medicine discovery, which will be helpful for further development of effective antiviral strategies in the swine industry.

猪流行性腹泻病毒(PEDV)、猪三角冠状病毒(PDCoV)、猪传染性胃肠炎病毒(TGEV)、猪急性腹泻综合征冠状病毒(SADS-CoV)和猪轮状病毒(PoRV)等主要猪肠道病毒(sev)在猪中引起严重的胃肠道疾病,给世界范围内的养猪业造成巨大的经济损失。在猪生产中缺乏控制sev的特异性药物和疫苗的情况下,本文综述了天然产物对这些主要猪肠道病毒的抑制作用。具体而言,它侧重于中药复方、草药提取物、药物单体和天然代谢物的抗sevs活性的最新研究。这篇综述详细阐述了这些天然产物如何发挥对sev的抗病毒活性,强调了它们作为控制猪肠道病毒感染的替代或补充剂的潜力。本文综述了抗猪肠道病毒天然产物的研究进展,提出了抗猪肠道病毒药物开发的新策略,为进一步开发有效的抗猪肠道病毒药物提供参考。
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引用次数: 0
Phorbol Myristate Acetate Inhibits Senecavirus A Replication by Activating IKBKE–Mediated IFN Pathway and NF-κB Signal 肉豆蔻酸酯佛蓬通过激活ikbke介导的IFN通路和NF-κB信号抑制塞尼卡病毒A的复制。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-01-31 DOI: 10.1155/tbed/5583480
Junfang Yan, Yanni Gao, Chengyi Guo, Yubei Dong, Ping Jiang, Juan Bai

Senecavirus A (SVA) is an emerging picornavirus causing vesicular disease indistinguishable from foot-and-mouth disease virus (FMDV). So far, there are no commercial vaccines and effective therapeutic drugs against SVA infection in China. Here, a library of 112 compounds were screened, and we found that phorbol myristate acetate plays an antagonistic role in the early stage of SVA infection. And phorbol 12-myristate 13-acetate (PMA) upregulates the expression of IKBKE, and activates IFN pathway and NF-κB signal. However, the PMA–mediated detrimental effect on SVA is reversed in IKBKE–deficient cells or when the NF-κB pathway blocked by BAY-117082, implying that IKBKE is the target for the antiviral effect of PMA. Additionally, PMA possesses antiviral effect on multiple RNA viruses, including porcine epidemic diarrhea virus (PEDV), porcine reproductive and respiratory syndrome virus (PRRSV), and encephalomyocarditis virus (EMCV). Overall, our findings offer that PMA inhibits SVA replication by activating IKBKE–mediated IFN pathway and NF-κB signal. And it might be a promising candidate for further broad-spectrum therapeutic development.

塞内卡病毒A (SVA)是一种引起水疱病的新兴小核糖核酸病毒,与口蹄疫病毒(FMDV)难以区分。到目前为止,中国还没有针对SVA感染的商业疫苗和有效的治疗药物。在此,我们筛选了一个包含112个化合物的文库,发现肉豆蔻酸佛波酯在SVA感染的早期具有拮抗作用。phorbol 12-肉豆蔻酸13-乙酸酯(PMA)上调IKBKE的表达,激活IFN通路和NF-κB信号。然而,PMA介导的对SVA的有害作用在IKBKE缺陷细胞中或当NF-κB通路被BAY-117082阻断时被逆转,这表明IKBKE是PMA抗病毒作用的靶点。此外,PMA对猪流行性腹泻病毒(PEDV)、猪繁殖与呼吸综合征病毒(PRRSV)、脑心肌炎病毒(EMCV)等多种RNA病毒具有抗病毒作用。总之,我们的研究结果表明,PMA通过激活ikbke介导的IFN通路和NF-κB信号来抑制SVA的复制。它可能是一个很有前途的候选者,进一步的广谱治疗发展。
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引用次数: 0
Towards Integrated Surveillance of Marine Brucellosis: Diagnostic and Phylogenetic Assessment of Brucella ceti in Stranded Dolphins of the Western Mediterranean Sea 迈向海洋布鲁氏菌病的综合监测:西地中海搁浅海豚中鲸氏布鲁氏菌的诊断和系统发育评估。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-01-31 DOI: 10.1155/tbed/2075116
Ignacio Vargas-Castro, Sara Andrés-Barranco, José Luis Crespo-Picazo, Laura Torre-Fuentes, Mª Ángeles Jiménez-Martínez, Marta Hernández, Manuel Arbelo, Julio Álvarez, Pilar María Muñoz, Vicente Marco-Cabedo, María Jesús de Miguel, Débora López, Marta Muñoz-Baquero, Daniel García-Párraga, José Ángel Barasona

Reports of brucellosis in free-ranging cetaceans are increasing worldwide, particularly in the Mediterranean Sea. To enhance diagnostic accuracy and epidemiological understanding of cetacean brucellosis in the Western Mediterranean Sea, we analyzed bacteriological, serological, and molecular data from 30 cetaceans belonging to three different species stranded along the coast of the Valencian Community (Spain) between 2011 and 2021. Brucella ceti infection was confirmed by bacteriological isolation in 14 animals (46.7%) and by genus-specific qPCR in 15 cases (50%), with some discrepancies between methods. When feasible, serological analyses were performed using a commercial blocking ELISA (bELISA) and/or the Rose Bengal agglutination test (RBT). In the absence of ELISA tests properly validated for its use in marine mammals, we assessed the optimum dilution and cut-off of this ELISA kit using panels of gold-standard sera from culture-positive and brucellosis-free dolphins. From a pathological perspective, 12 infected animals showed moderate to severe meningoencephalitis or meningoencephalomyelitis with lymphoplasmacytic infiltration. Additionally, whole-genome sequencing (WGS) enabled the identification of two sequence types (STs), ST26 and ST49, indicating phylogenetic divergence. Our findings provide new insights into the phylogenetics of B. ceti and highlight the particular susceptibility of striped dolphins to this bacterium. The study also evidences the need for proper validation of the indirect diagnostic methods used for surveillance and seroepidemiological studies of brucellosis in marine mammals.

在世界范围内,特别是在地中海,自由放养的鲸类动物中布鲁氏菌病的报告正在增加。为了提高地中海西部鲸类布鲁氏菌病的诊断准确性和流行病学认识,我们分析了2011年至2021年间在西班牙瓦伦西亚社区沿岸搁浅的30只鲸类动物的细菌学、血清学和分子数据,这些鲸类属于三种不同的物种。经细菌分离鉴定14只动物(46.7%)感染鲸布鲁氏菌,经属特异性qPCR鉴定15只动物(50%)感染鲸布鲁氏菌,方法间存在一定差异。可行时,使用商业阻断ELISA (bELISA)和/或玫瑰孟加拉凝集试验(RBT)进行血清学分析。由于缺乏对其在海洋哺乳动物中的使用进行适当验证的ELISA试验,我们使用来自培养阳性和无布鲁氏菌病的海豚的金标准血清板评估了该ELISA试剂盒的最佳稀释和切断。从病理学上看,12只感染动物表现为中重度脑膜脑炎或伴淋巴浆细胞浸润的脑膜脑脊髓炎。此外,全基因组测序(WGS)鉴定出两种序列类型(STs), ST26和ST49,表明系统发育差异。我们的发现为鲸头杆菌的系统发育提供了新的见解,并强调了条纹海豚对这种细菌的特殊易感性。该研究还证明,需要对用于海洋哺乳动物布鲁氏菌病监测和血清流行病学研究的间接诊断方法进行适当的验证。
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引用次数: 0
Detection of Two High Pathogenicity Avian Influenza Virus (HPAIV) Subtypes, H5N1 and H5N5, in a Mass Mortality Event in Wild Seabirds and Co-Location With Dead Seals H5N1和H5N5两种高致病性禽流感病毒(HPAIV)亚型在一起野生海鸟大规模死亡事件中的检测及其与死海豹的同地分布
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-01-24 DOI: 10.1155/tbed/4680980
Marco Falchieri, Eleanor Bentley, Holly A. Coombes, Benjamin C. Mollett, Jacob Terrey, Samantha Holland, Edward Stubbings, Natalie Mcginn, Jayne Cooper, Samira Ahmad, Jonathan Lewis, Ben Clifton, Nick Collinson, James Aegerter, Divya Venkatesh, Debbie J. F. Russell, Joe James, Scott M. Reid, Ashley C. Banyard

H5Nx Clade 2.3.4.4b high pathogenicity avian influenza viruses (HPAIVs) have been detected repeatedly in Great Britain (GB) since autumn 2020, with H5N1 dominating detections but with low level detection of H5N5 during 2025. Globally, these viruses have caused mass mortalities in captive and wild avian and mammalian populations, including terrestrial and marine mammals. H5N1 has been the dominant subtype, and whilst detections have overlapped temporally, occurrences have often been spatially distinct. Here, we report the detection of a mortality event in wild birds on the Norfolk coastline in the East of England, where H5N1 HPAIV was detected in five Great Black-backed Gulls (GBBGs; Larus marinus) and a Northern Fulmar (Fulmarus glacialis). Interestingly, at the same site, and as part of the same mortality event, a total of 17 GBBGs, one Herring Gull (Larus argentatus), one Atlantic Puffin (Fratercula arctica) and one Northern Fulmar tested positive for H5N5 HPAIV. Additionally, H5N5 was also detected in 17 co-located Grey Seal carcases (Halichoerus grypus). The H5N1 HPAIV from an infected bird belonged to genotype DI.2, closely related to contemporaneous detections in GB wild birds and poultry. In contrast, all H5N5 HPAIVs from birds and seals were Genotype I with a 22-amino acid stalk deletion in neuraminidase (NA) and the 627K polymorphism in PB2. This represents the first recorded instance in GB of two subtypes being detected within the same avian population at the same location. It is also the first mass detection of HPAIV H5N5 in mammals within GB. Potential infection mechanisms are discussed.

自2020年秋季以来,英国多次检测到H5Nx分支2.3.4.4b高致病性禽流感病毒(hpaiv),其中H5N1占主导地位,而2025年期间H5N5的检测水平较低。在全球范围内,这些病毒在圈养和野生鸟类和哺乳动物种群中造成大量死亡,包括陆地和海洋哺乳动物。H5N1一直是主要亚型,虽然发现在时间上是重叠的,但发生情况往往在空间上是不同的。在这里,我们报告了在英格兰东部诺福克海岸线的野生鸟类中发现的死亡事件,在那里发现了5只大黑背鸥(GBBGs; Larus marinus)和一只北方狐尾鸥(Fulmarus glacialis)的H5N1 HPAIV。有趣的是,在同一地点,作为同一死亡事件的一部分,共有17只gbbg、1只银鸥(Larus argentatus)、1只大西洋海雀(Fratercula arctic)和1只北方富尔马检测出H5N5 HPAIV阳性。此外,在17具灰海豹尸体中也检测到H5N5病毒。H5N1型HPAIV为di2基因型,与同期在中国野生鸟类和家禽中检测到的H5N1型HPAIV密切相关。禽类和海豹的H5N5 hpaiv均为基因I型,神经氨酸酶(NA)缺失22个氨基酸,PB2存在627K多态性。这是在英国首次记录到在同一地点的同一禽类种群中检测到两种亚型。这也是我国首次在哺乳动物中大规模检测到HPAIV H5N5。讨论了潜在的感染机制。
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引用次数: 0
Evolution and Spread of Regionally Adapted Newcastle Disease Virus Isolates From Live Bird Markets in Nigeria, 2023–2024 2023-2024年尼日利亚活禽市场中区域适应性新城疫病毒分离株的进化和传播
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-01-24 DOI: 10.1155/tbed/8829822
Mohammed Usman Sajo, Dongyeop Lee, Jean Nepomuscene Hakizimana, Augustino Chengula, Abdul-Dahiru El-Yuguda, Dong-Hun Lee, Gerald Misinzo

Newcastle disease (ND) virus (NDV) infection ranks among the most important poultry diseases globally. In Nigeria, ND remains a persistent menace to poultry production, marked by recurrent outbreaks. However, there is limited understanding of the evolutionary changes and transmission dynamics of the virus in the region. A molecular epidemiological study was conducted to elucidate the evolutionary and transmission patterns of NDV in Nigeria. Phylogenetic analysis of seven NDV isolates from cases recorded between 2023 and 2024 in four Northeastern states exhibited genetic diversity and formed distinct clusters that correspond to the prevailing subgenotype XIV.2. The maximum clade credibility (MCC) tree suggests sustained local circulation of the dominant NDV lineage, likely preceded by an international introduction from Southeast Asia. The fusion genes of the Nigerian genotype XIV and another important genotype XVII are mainly under negative selection, but codons 516 (XIV) and 114 (XVII) consistently show positive selection. The Nextstrain analysis reveals ongoing local evolution and genetic diversity of NDV in West Africa, and Central Nigeria acting as a key transmission hub, with evidence of reintroductions from neighboring countries. These findings have implications for NDV control and prevention strategies in Nigeria, highlighting the need for enhanced NDV surveillance, transboundary transmission control, and development of a vaccine tailored to the circulating NDV genotypes. The study also contributes to the understanding of regional spread pattern of NDV and informs evidence-based policies for mitigating the impact of the disease on poultry production.

新城疫病毒(NDV)感染是全球最重要的家禽疾病之一。在尼日利亚,ND仍然是对家禽生产的持续威胁,其特点是反复暴发。然而,对该地区病毒的进化变化和传播动态的了解有限。为阐明NDV在尼日利亚的进化和传播模式,进行了分子流行病学研究。对美国东北部4个州2023年至2024年间记录的7株NDV分离株的系统发育分析显示,该分离株具有遗传多样性,并形成了不同的聚类,对应于流行的XIV.2亚基因型。最大进化枝可信度(MCC)树表明,NDV主要谱系在当地持续传播,可能在东南亚的国际传入之前。尼日利亚基因型XIV和另一个重要基因型XVII的融合基因主要处于负选择状态,而密码子516 (XIV)和114 (XVII)则一致表现为正选择。Nextstrain分析显示,西非和尼日利亚中部是NDV的主要传播中心,当地正在发生进化和遗传多样性,有证据表明从邻国重新引入NDV。这些发现对尼日利亚的新城疫病病毒控制和预防战略具有重要意义,强调需要加强新城疫病病毒监测、跨界传播控制以及开发适合流行新城疫病病毒基因型的疫苗。该研究还有助于了解NDV的区域传播模式,并为减轻该疾病对家禽生产的影响的循证政策提供信息。
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引用次数: 0
Epidemiology and Risk Modelling of Influenza A Virus Within and Between Pig Herds in Northern Lao PDR 老挝人民民主共和国北部猪群内部和之间甲型流感病毒的流行病学和风险模型。
IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES Pub Date : 2026-01-23 DOI: 10.1155/tbed/2407533
Arata Hidano, William T. M. Leung, Souk Phomhacksa, Anna Durrance-Bagale, Jose A. Garcia-Rivera, Anca Selariu, Robert D. Hontz, Andrew G. Letizia, Watthana Theppangna, James W. Rudge

Animal-origin influenza A virus (IAV) is a perennial candidate for causing the next pandemic. With high risk for interspecies IAV transmission but limited resources for surveillance, particularly in rural areas of low- and middle-income countries (LMICs) such as Laos, there is a need to develop targeted, risk-based strategies for early detection of novel IAVs that may emerge in pigs. We conducted (1) a cross-sectional survey to characterise pig producer types, management practices and pig movement patterns; (2) sampling among pigs in slaughterhouses to quantify IAV seroprevalence and infection; and (3) within- and between-herd disease modelling exploring the relative importance of farm type for the IAV epidemiology. Overall, 31.3% (100/319) of sera and 1.4% (7/515) of nasal swab samples from pigs tested positive for IAV antibodies (ELISA) and viral RNA (PCR detection of IAV M-gene), respectively. Most pigs sampled were exotic breeds and supplied by commercial farms. Using hierarchical Bayesian logistic regression models, seropositivity was significantly higher among exotic breeds compared with local breeds and higher among pigs originating from provinces outside of our study area. Stochastic, individual-based models of within- and between-herd transmission were developed and calibrated for five pig producer types using the cross-sectional data from 202 study participants. The modelling results suggested sustained IAV transmission between farms was unlikely unless the probability of local transmission, independent of pig movement, was relatively high, and the initial infection was seeded in areas with higher densities of smallholders. Between-herd IAV transmission was only sustained in scenarios where persistently infected commercial farms were present to continuously seed infection among the pig smallholder network. Together, these factors underscore risks associated with livestock intensification in commercial and smallholder productions. A larger study is warranted to fully characterise the interprovincial pig movement and evaluate IAV transmission within Laos to inform the national surveillance strategy.

动物源性甲型流感病毒(IAV)是引起下一次大流行的长期候选病毒。由于种间病毒传播的风险很高,但监测资源有限,特别是在老挝等低收入和中等收入国家(LMICs)的农村地区,因此需要制定有针对性的、基于风险的战略,以便及早发现可能在猪身上出现的新型病毒。我们进行了(1)横断面调查,以描述生猪生产者类型、管理实践和生猪运动模式;(2)对屠宰场的生猪进行抽样,量化禽流感病毒的血清阳性率和感染情况;(3)建立畜群内和畜群间疾病模型,探讨猪场类型对禽流感流行病学的相对重要性。总体而言,31.3%(100/319)的猪血清和1.4%(7/515)的猪鼻拭子样本分别检测出IAV抗体(ELISA)和病毒RNA (PCR检测IAV m基因)阳性。大多数取样的猪是外来品种,由商业农场供应。使用分层贝叶斯逻辑回归模型,外来品种的血清阳性率明显高于本地品种,来自研究区外省份的猪的血清阳性率也高于本地品种。利用来自202名研究参与者的横断面数据,开发并校准了五种养猪生产者类型的猪群内和猪群之间的随机、基于个体的传播模型。建模结果表明,猪场之间持续的IAV传播是不可能的,除非独立于猪的运动的本地传播的可能性相对较高,并且最初的感染是在小农密度较高的地区播种的。猪群之间的IAV传播仅在持续感染的商业猪场中持续存在,从而在猪小农网络中持续传播感染的情况下持续存在。总之,这些因素突出了商业和小农生产中与畜牧集约化有关的风险。有必要进行更大规模的研究,以充分描述省际生猪流动的特征,并评估老挝境内的禽流感传播情况,为国家监测战略提供信息。
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Transboundary and Emerging Diseases
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