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Origins and population genetics of sambar deer (Cervus unicolor) introduced to Australia and New Zealand 引进澳大利亚和新西兰的桑巴鹿的起源和种群遗传学
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-20 DOI: 10.1071/WR22120
L. Rollins, Daniel Lees, A. Woolnough, Andrea J. West, M. Perry, D. Forsyth
ABSTRACT Context Some populations of introduced species cause significant undesirable impacts but can also act as reservoirs for genetic diversity. Sambar deer (Cervus unicolor) are ‘Vulnerable’ in their native range and invasive in Australia and New Zealand. Genetic data can be used to determine whether these introduced populations might serve as genetic reservoirs for declining native populations and to identify spatial units for management. Aim We aimed to identify the provenance of sambar deer in Australia and New Zealand, and to characterise their genetic diversity and population structure. Methods We used mitochondrial control region sequences and 18 nuclear microsatellite loci of 24 New Zealand and 63 Australian sambar deer collected across continuous habitat in each location. We estimated genetic diversity and population differentiation by using pairwise FST, AMOVA, and structure analyses. We compared our data with 27 previously published native and invasive range sequences to identify phylogenetic relationships. Key results Sambar deer in Australia and New Zealand are genetically more similar to those in the west of the native range (South and Central Highlands of India, and Sri Lanka), than to those in the east (eastern India, and throughout Southeast Asia). Nuclear genetic diversity was lower than in the native range; only one mitochondrial haplotype was found in each introduced population. Australian and New Zealand sambar deer were genetically distinct but there was no population structure within either population. Conclusions The genetic differences we identified between these two introduced populations at putatively neutral loci indicate that there also may be underlying diversity at functional loci. The lack of population genetic structure that we found within introduced populations suggests that individuals within these populations do not experience barriers to dispersal across the areas sampled. Implications Although genetic diversity is reduced in the introduced range compared with the native range, sambar deer in Australia and New Zealand harbour unique genetic variants that could be used to strengthen genetic diversity in populations under threat in the native range. The apparent high levels of gene flow across the areas we sampled suggest that localised control is unlikely to be effective in Australia and New Zealand.
一些引进物种的居群造成了显著的不良影响,但也可以作为遗传多样性的储存库。桑巴鹿(Cervus unicolor)在其本土范围内是“脆弱的”,在澳大利亚和新西兰是入侵的。遗传数据可用于确定这些引进种群是否可作为逐渐减少的本地种群的遗传库,并确定可供管理的空间单元。目的:确定澳大利亚和新西兰桑巴鹿的来源,并确定其遗传多样性和种群结构特征。方法利用24只新西兰鹿和63只澳大利亚鹿的线粒体控制区序列和18个核微卫星位点进行分析。我们通过FST、AMOVA和结构分析来估计遗传多样性和群体分化。我们将我们的数据与先前发表的27个本地和入侵范围序列进行比较,以确定系统发育关系。主要结果:澳大利亚和新西兰的山巴尔鹿在基因上与原居地西部(印度南部和中部高地以及斯里兰卡)的鹿更相似,而与东部(印度东部和整个东南亚)的鹿更相似。核遗传多样性低于原生地;在每个引入种群中只发现一个线粒体单倍型。澳大利亚和新西兰的鹿在遗传上是不同的,但在两个种群中都没有种群结构。结论两个引种群体在中性位点上的遗传差异表明,在功能位点上也可能存在潜在的多样性。我们在引进种群中发现的种群遗传结构的缺乏表明,这些种群中的个体在采样区域内的分散没有遇到障碍。尽管与本地区相比,引进区鹿的遗传多样性有所降低,但澳大利亚和新西兰的鹿具有独特的遗传变异,可用于加强本地区受威胁种群的遗传多样性。在我们取样的地区,明显的高水平基因流动表明,在澳大利亚和新西兰,局部控制不太可能有效。
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引用次数: 2
A review of viral and parasitic infections in wild deer in Australia with relevance to livestock and human health 澳大利亚野鹿病毒和寄生虫感染与牲畜和人类健康的关系综述
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-11 DOI: 10.1071/WR22118
Jose L. Huaman, K. Helbig, T. Carvalho, Mark Doyle, J. Hampton, D. Forsyth, A. Pople, C. Pacioni
ABSTRACT Wild animals harbour a diverse range of pathogens. In Europe and North America, cervids (Family Cervidae) can act as reservoirs for viral, prion, bacterial, and parasitic infections. Wild deer often inhabit agricultural land, therefore representing a biosecurity risk due to their potential ability to transmit diseases to livestock. Multiple studies have investigated the infection status of wild deer in Australia, mostly during the 1970s and 1980s, and deer populations have increased greatly in abundance and distribution since then. Those studies provide an important baseline for the pathogens carried by wild deer in Australia but are limited by small sample size, the small number of deer species studied, and the disease detection methods used. Recent investigations using ELISA (Enzyme-Linked Immunosorbent Assay), PCR-based assays, and next-generation sequencing have substantially increased our understanding of viral and parasitic infections in Australian deer. These studies indicate that deer may act as reservoirs for pathogens such as Pestivirus, Neospora caninum and Entamoeba bovis. The use of next-generation sequencing has led to the discovery of novel viruses such as Picobirnavirus and a novel species of the genus Bopivirus, both of which pose transmission risks for domestic animals. Recent research confirms that wild deer could be a future source of viral and parasitic infections for domestic livestock and other wildlife species.
野生动物携带多种病原体。在欧洲和北美,鹿科(鹿科)可以作为病毒、朊病毒、细菌和寄生虫感染的宿主。野鹿通常居住在农业用地上,因此,由于它们有可能将疾病传播给牲畜,因此构成了生物安全风险。多项研究调查了澳大利亚野鹿的感染状况,主要是在20世纪70年代和80年代,从那时起,鹿的数量和分布都大大增加。这些研究为澳大利亚野鹿携带的病原体提供了重要的基线,但受样本量小、研究的鹿种数量少以及所使用的疾病检测方法的限制。最近使用ELISA(酶联免疫吸附试验)、基于pcr的测定和下一代测序的研究大大增加了我们对澳大利亚鹿病毒和寄生虫感染的了解。这些研究表明鹿可能是鼠疫病毒、犬新孢子虫和牛内阿米巴等病原体的宿主。新一代测序的使用导致发现了新型病毒,如小核糖核酸病毒和博匹病毒属的一种新种,这两种病毒都对家畜构成传播风险。最近的研究证实,野鹿可能是家畜和其他野生动物的病毒和寄生虫感染的未来来源。
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引用次数: 1
Genetic analysis reveals spatial structure in an expanding introduced rusa deer population 遗传分析揭示了扩大引进鹿种群的空间结构
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-10 DOI: 10.1071/WR22128
Scarlett Li-Williams, Katarina C. Stuart, S. Comte, D. Forsyth, Michelle Dawson, W. Sherwin, L. Rollins
ABSTRACT Context Rusa deer (Cervus timorensis), originally introduced in the 1860s, are still spreading in eastern Australia. The expanding peri-urban rusa deer population in the Illawarra region of New South Wales, Australia is having undesirable impacts on human and ecological communities, but the spatial structure of this population has not been investigated. Genetic information on invasive species is potentially useful in identifying management units to mitigate undesirable impacts. Aim The aim of this study was to investigate population structure, characterise dispersal, and determine if natural and human-made landscape features affected gene flow in rusa deer invading the Illawarra region of New South Wales. Methods We used reduced representation sequencing (DArT-Seq) to analyse single nucleotide polymorphisms distributed throughout the genomic DNA of rusa deer culled during a management program. We used admixture and Principal Component Analyses to investigate population structure with respect to natural and human-made landscape features, and we investigated whether our genetic data supported the presence of sex-biased dispersal. Key results Genetic diversity was highest in the north, near the original introduction site. A railway line demarcated restricted gene flow. Surprisingly, the Illawarra escarpment, a prominent landscape feature, did not restrict gene flow. There was no evidence of sex-biased dispersal and seven individuals were identified as genetic outliers. Conclusions The genetic structure of the Illawarra rusa deer population is consistent with individuals spreading south from their introduction site in Royal National Park. The population is not panmictic, and a landscape feature associated with urbanisation was associated with increased spatial genetic structure. Outliers could indicate hybridisation or secondary incursion events. Implications Rusa deer can be expected to continue invading southwards in the Illawarra region, but landscape features associated with urbanisation might reduce dispersal across the landscape. The genetic structuring of the population identified three potential management units on which to prioritise ground shooting operations.
摘要背景鹿鹿(Cervus timorensis)最初于19世纪60年代引进,目前仍在澳大利亚东部传播。澳大利亚新南威尔士州伊拉瓦拉地区城市周边鹿群的不断扩大对人类和生态群落产生了不良影响,但鹿群的空间结构尚未得到调查。入侵物种的遗传信息在确定管理单位以减轻不良影响方面可能有用。本研究的目的是调查种群结构、分布特征,并确定自然和人为景观特征是否影响入侵新南威尔士州伊拉瓦拉地区的鲁沙鹿的基因流动。方法采用减少代表性测序(DArT-Seq)方法分析在管理程序中被扑杀的鹿群基因组DNA中分布的单核苷酸多态性。我们利用混合分析和主成分分析来研究自然和人为景观特征的种群结构,并研究我们的遗传数据是否支持性别偏倚分散的存在。主要结果遗传多样性在靠近原引种地的北部地区最高。一条铁路线划定了有限制的基因流动。令人惊讶的是,伊拉瓦拉悬崖,一个突出的景观特征,并没有限制基因流动。没有证据表明有性别偏见的分散,有7个人被确定为遗传异常值。结论伊拉瓦拉鹿种群的遗传结构与从皇家国家公园引进地向南扩散的个体一致。人口不是泛型的,与城市化相关的景观特征与空间遗传结构的增加有关。异常值可能表明杂交或继发性入侵事件。在伊拉瓦拉地区,鹿群可能会继续向南入侵,但与城市化相关的景观特征可能会减少鹿群在整个景观中的分布。种群的遗传结构确定了三个潜在的管理单位,以确定地面射击行动的优先次序。
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引用次数: 2
Hybridisation rates, population structure, and dispersal of sambar deer (Cervus unicolor) and rusa deer (Cervus timorensis) in south-eastern Australia 澳洲东南部黑鹿(Cervus unicolor)和红鹿(Cervus timorensis)的杂交率、种群结构和分布
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-06 DOI: 10.1071/WR22129
E. Hill, N. Murphy, Scarlett Li-Williams, C. Davies, D. Forsyth, S. Comte, L. Rollins, F. Hogan, Faye Wedrowicz, Troy Crittle, E. Thomas, Luke Woodford, C. Pacioni
ABSTRACT Context Introduced populations of sambar deer (Cervus unicolor) and rusa deer (Cervus timorensis) are present across south-eastern Australia and are subject to local population control to alleviate their negative impacts. For management to be effective, identification of dispersal capability and management units is necessary. These species also readily hybridise, so additional investigation of hybridisation rates across their distributions is necessary to understand the interactions between the two species. Aim Measure the hybridisation rate of sambar and rusa deer, assess broad-scale population structure present within both species and identify distinct management units for future population control, and measure the likely dispersal capability of both species. Methods In total, 198 sambar deer, 189 rusa deer, and three suspected hybrid samples were collected across Victoria and New South Wales (NSW). After sequencing and filtering, 14 099 polymorphic single-nucleotide polymorphism (SNP) markers were retained for analysis. Hybridisation rates were assessed before the data were split by species to identify population structure, diversity indices, and dispersal distances. Key results Across the entire dataset, 17 hybrids were detected. Broad-scale population structure was evident in sambar deer, but not among the sites where rusa deer were sampled. Analysis of dispersal ability showed that a majority of deer movement occurred within 20 km in both species, suggesting limited dispersal. Conclusions Distinct management units of sambar deer can be identified from the dataset, allowing independent population control. Although broad-scale population structure was not evident in the rusa deer populations, dispersal limits identified suggest that rusa deer sites sampled in this study could be managed separately. Sambar × rusa deer hybrids are present in both Victoria and NSW and can be difficult to detect on the basis of morphology alone. Implications Genetic analysis can identify broad-scale management units necessary for population control, and estimates of dispersal capability can assist in delineating management units where broad-scale population structure may not be apparent. The negative impacts associated with hybridisation require further investigation to determine whether removal of hybrids should be considered a priority management aim.
摘要背景引进的鹿(Cervus unicolor)和鹿(Cervus timorensis)种群分布在澳大利亚东南部,并受到当地种群控制以减轻其负面影响。为使管理有效,必须确定扩散能力和管理单位。这些物种也很容易杂交,因此有必要对其分布中的杂交率进行额外的调查,以了解两种物种之间的相互作用。目的测定三鹿和鹿的杂交率,评估两种鹿的大范围种群结构,确定未来种群控制的不同管理单位,并测量两种鹿可能的扩散能力。方法在维多利亚州和新南威尔士州共采集沙鹿198只、沙鹿189只和疑似杂交鹿3只。测序筛选后,共获得14099个单核苷酸多态性(SNP)标记供分析。在按物种划分数据之前,对杂交率进行评估,以确定种群结构、多样性指数和扩散距离。在整个数据集中,共检测到17个杂交品种。大尺度的种群结构在山鹿中很明显,而在鹿的取样点中则不明显。分散能力分析表明,两种鹿的大部分活动发生在20 km范围内,表明其分散程度有限。结论从数据集中可以识别出不同的管理单位,可以进行独立的种群控制。虽然大范围的种群结构在鹿群中并不明显,但所确定的分散限度表明,本研究取样的鹿群可以单独管理。在维多利亚州和新南威尔士州都有Sambar × rusa鹿的杂交品种,仅凭形态学很难发现。遗传分析可以确定种群控制所需的大规模管理单元,而对分散能力的估计可以帮助划定大规模种群结构可能不明显的管理单元。与杂交相关的负面影响需要进一步调查,以确定清除杂交是否应被视为优先管理目标。
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引用次数: 3
Impacts of wild pigs on acorn availability as a food source for native wildlife 野猪对橡子作为本地野生动物食物来源的影响
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-29 DOI: 10.1071/wr22146
Arielle S. Fay, Stephen J. Zenas, Mark D Smith, S. Ditchkoff
ABSTRACT Context. Wild pigs (Sus scrofa) are a non-native invasive species that causes millions of dollars in damage each year to agriculture in the United States of America, destroys native plant communities, and competes with native wildlife for seasonally available pulse resources such as acorns. Despite many anecdotal observations and diet studies suggesting wild pigs reduce acorn availability for other wildlife species, no studies have comparatively examined acorn consumption among species in a natural environment (i.e. competition). Aims. Our objective was to estimate the consumption of acorns by wild pigs relative to that of other native wildlife species. Methods We established 40 monitoring stations beneath acorn-producing trees in a 3406-ha study area in eastern Alabama with an approximate density of 9 pigs/km2. At each monitoring station, we placed five acorns on a 1-m × 1-m sand pad and positioned a game camera to record acorn fate during 2-week intervals once a month from September to February 2018–2019 and 2019–2020. Cameras were set to capture images once every minute continuously during the survey period. Additionally, we constructed acorn traps from 18.9-L plastic buckets to estimate the timing and relative amounts of acorns that were potentially available for consumption at each monitoring station. Key results From approximately 7.3 million camera images, we observed 15 wildlife species consuming 707 acorns over the 2 years. Aside from animal consumption, acorn fate was categorised as lost due to flooding (n = 153), remaining on the sand pad at time of camera failure (n = 720), or not consumed during the sampling period (n = 536). Key conclusions Top acorn consumers were squirrel (Sciurus spp.), white-tailed deer (Odocoileus virginianus), raccoon (Procyon lotor), and wild pig. In the 2018–2019 sampling period, wild pigs consumption accounted for 23.4% (n = 87) of the total consumed acorns. After wild pig removal efforts were initiated in the summer and autumn of 2019, wild pigs consumed only 7.2% (n = 24) of consumed acorns. Implications Wild pigs consume a significant number of acorns and likely reduce the availability of this pulse resource for other native wildlife species and may potentially influence oak regeneration.
{"title":"Impacts of wild pigs on acorn availability as a food source for native wildlife","authors":"Arielle S. Fay, Stephen J. Zenas, Mark D Smith, S. Ditchkoff","doi":"10.1071/wr22146","DOIUrl":"https://doi.org/10.1071/wr22146","url":null,"abstract":"ABSTRACT Context. Wild pigs (Sus scrofa) are a non-native invasive species that causes millions of dollars in damage each year to agriculture in the United States of America, destroys native plant communities, and competes with native wildlife for seasonally available pulse resources such as acorns. Despite many anecdotal observations and diet studies suggesting wild pigs reduce acorn availability for other wildlife species, no studies have comparatively examined acorn consumption among species in a natural environment (i.e. competition). Aims. Our objective was to estimate the consumption of acorns by wild pigs relative to that of other native wildlife species. Methods We established 40 monitoring stations beneath acorn-producing trees in a 3406-ha study area in eastern Alabama with an approximate density of 9 pigs/km2. At each monitoring station, we placed five acorns on a 1-m × 1-m sand pad and positioned a game camera to record acorn fate during 2-week intervals once a month from September to February 2018–2019 and 2019–2020. Cameras were set to capture images once every minute continuously during the survey period. Additionally, we constructed acorn traps from 18.9-L plastic buckets to estimate the timing and relative amounts of acorns that were potentially available for consumption at each monitoring station. Key results From approximately 7.3 million camera images, we observed 15 wildlife species consuming 707 acorns over the 2 years. Aside from animal consumption, acorn fate was categorised as lost due to flooding (n = 153), remaining on the sand pad at time of camera failure (n = 720), or not consumed during the sampling period (n = 536). Key conclusions Top acorn consumers were squirrel (Sciurus spp.), white-tailed deer (Odocoileus virginianus), raccoon (Procyon lotor), and wild pig. In the 2018–2019 sampling period, wild pigs consumption accounted for 23.4% (n = 87) of the total consumed acorns. After wild pig removal efforts were initiated in the summer and autumn of 2019, wild pigs consumed only 7.2% (n = 24) of consumed acorns. Implications Wild pigs consume a significant number of acorns and likely reduce the availability of this pulse resource for other native wildlife species and may potentially influence oak regeneration.","PeriodicalId":23971,"journal":{"name":"Wildlife Research","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2023-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72906618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of 8 years of fertility control (nicarbazin) to manage urban pigeon populations 8年生育控制(尼卡巴嗪)对城市鸽子种群管理的评价
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-21 DOI: 10.1071/wr22166
Carlos González-Crespo

Context: The common pigeon (Columba livia var. domestica) is a synurbic species widely distributed around the world. High local densities of pigeons have negative impacts on animal and public health. Urban pigeon fouling also damages buildings and infrastructures, resulting in increased maintenance costs. Although the reduction of food and shelter would be the most effective control method, it does not apply in most cases where the amount of shelter and food can be unlimited and control very difficult achieve. However, a reduction and control of the population by fertility control using nicarbazin (NCZ, Ovistop®) could be achieved without the need to capture and remove any specimens.

Aim and methods: The aims of this study were (1) to describe the experience of up to 8 years of use of fertility control by NCZ on pigeon numbers in 24 towns and cities in Catalonia (Spain), (2) to assess the potential for non-target species to be affected by NCZ, and (3) to quantify the costs of implementing local population control of urban pigeons via NCZ. Local number of pigeons was estimated via population censuses.

Key results: From the beginning of the treatment, a significant steady decreasing trend (average of −12% per year) in the pigeon abundance was registered. In very few instances, non-target birds species were observed to feed on NCZ.

Conclusions and implications: NZC was an effective and selective method of animal welfare to reduce the total number of pigeons in the municipalities included in this study, while not affecting other non-target species. The estimated cost of the annual treatment was €33.6 per pigeon; in 68% of the municipalities, the total annual cost was halved after 3 years of treatment. The findings of this study are in agreement with previous experiences controlling pigeon colonies by using NCZ in other countries.

背景:普通鸽子(Columba livia var. domestica)是一种广泛分布在世界各地的共尿种。当地鸽子密度高对动物和公众健康有负面影响。城市鸽子污染还会破坏建筑物和基础设施,导致维护成本增加。虽然减少食物和住所是最有效的控制方法,但它并不适用于大多数情况,因为住房和食物的数量是无限的,而且很难实现控制。然而,通过使用尼卡巴嗪(NCZ, Ovistop®)的生育控制可以实现种群的减少和控制,而无需捕获和移除任何标本。目的和方法:本研究的目的是:(1)描述在加泰罗尼亚(西班牙)的24个城镇中,NCZ对鸽子数量进行长达8年的生育控制的经验,(2)评估NCZ对非目标物种的潜在影响,(3)量化通过NCZ实施当地城市鸽子种群控制的成本。通过人口普查估计了当地鸽子的数量。关键结果:从处理开始,鸽子数量呈显著稳定下降趋势(平均每年- 12%)。在极少数情况下,观察到非目标鸟类以NCZ为食。结论和意义:NZC是一种有效的、选择性的动物福利方法,在不影响其他非目标物种的情况下,减少了所研究城市的鸽子总数。每年的治疗费用估计为每只鸽子33.6欧元;在68%的市镇,经过3年的治疗,年总费用减少了一半。本研究结果与其他国家利用NCZ控制鸽群的经验一致。
{"title":"Evaluation of 8 years of fertility control (nicarbazin) to manage urban pigeon populations","authors":"Carlos González-Crespo","doi":"10.1071/wr22166","DOIUrl":"https://doi.org/10.1071/wr22166","url":null,"abstract":"<p><b>Context: </b>The common pigeon (<i>Columba livia var. domestica</i>) is a synurbic species widely distributed around the world. High local densities of pigeons have negative impacts on animal and public health. Urban pigeon fouling also damages buildings and infrastructures, resulting in increased maintenance costs. Although the reduction of food and shelter would be the most effective control method, it does not apply in most cases where the amount of shelter and food can be unlimited and control very difficult achieve. However, a reduction and control of the population by fertility control using nicarbazin (NCZ, Ovistop®) could be achieved without the need to capture and remove any specimens.</p><p><b>Aim and methods: </b>The aims of this study were (1) to describe the experience of up to 8 years of use of fertility control by NCZ on pigeon numbers in 24 towns and cities in Catalonia (Spain), (2) to assess the potential for non-target species to be affected by NCZ, and (3) to quantify the costs of implementing local population control of urban pigeons via NCZ. Local number of pigeons was estimated via population censuses.</p><p><b>Key results: </b>From the beginning of the treatment, a significant steady decreasing trend (average of −12% per year) in the pigeon abundance was registered. In very few instances, non-target birds species were observed to feed on NCZ.</p><p><b>Conclusions and implications: </b>NZC was an effective and selective method of animal welfare to reduce the total number of pigeons in the municipalities included in this study, while not affecting other non-target species. The estimated cost of the annual treatment was €33.6 per pigeon; in 68% of the municipalities, the total annual cost was halved after 3 years of treatment. The findings of this study are in agreement with previous experiences controlling pigeon colonies by using NCZ in other countries.</p>","PeriodicalId":23971,"journal":{"name":"Wildlife Research","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2023-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138540469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Kinship analysis reveals low dispersal in a hog deer (Axis porcinus) population in Wilsons Promontory National Park, Australia 亲属关系分析表明,在澳大利亚威尔逊海岬国家公园的猪鹿(Axis porcinus)种群的低分散
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-21 DOI: 10.1071/WR22098
E. Hill, N. Murphy, A. Linacre, Simon D. Toop, J. Strugnell
ABSTRACT Context A wild population of non-native hog deer has established in the Gippsland region of Victoria, Australia, and there is particular concern about its impact on native vegetation in Wilsons Promontory National Park (WPNP). Since 2015, there has been annual culling of hog deer at WPNP to reduce deer abundances and impacts. Aim The aims of this study were to use a kinship approach based on genotyping to assess contemporary dispersal of hog deer across WPNP, by identifying close kin, to determine whether dispersal of deer into culled sites from unculled sites may affect the long-term success of management there. Differences in the dispersal of male and female hog deer were also investigated. Methods In total, 91 hog deer tissue samples were collected across WPNP and surrounding sites. Single nucleotide polymorphism (SNP) markers were sequenced, and a final dataset comprising 8275 SNPs was used for analysis. First-order, second-order, and intermediate relative pairs were identified, and the geographic distance between these pairs was assessed to determine inter-pair distances to infer dispersal. Spatial autocorrelation between male and female samples was evaluated to measure the effects of sex-biased dispersal. Key results Only seven second-order relative pairs were found across different sites, with a 30 km distance between the furthest pair observed. However, most inter-pair distances across sites were ~5–10 km. Analyses of sex-biased dispersal showed that movement by deer was not strongly influenced by one sex. Conclusions Although hog deer in WPNP are genetically similar, most relatives that were sampled were not widely dispersed. This suggests that there is limited dispersal of hog deer across this park. Implications Recolonisation of hog deer at culled sites via dispersal is likely to be infrequent in WPNP. Kinship analysis provides an effective method of assessing contemporary dispersal and could be applied to other species to assess fine-scale movement across landscapes.
摘要背景在澳大利亚维多利亚州吉普斯兰地区建立了一个非本地野猪鹿野生种群,其对威尔逊海岬国家公园(WPNP)本地植被的影响引起了人们的特别关注。自2015年以来,WPNP每年都会扑杀猪鹿,以减少鹿的丰度和影响。本研究的目的是利用基于基因分型的亲属关系方法,通过鉴定近亲,评估猪鹿在WPNP地区的当代扩散,以确定鹿从未被淘汰的地点扩散到被淘汰的地点是否会影响该地区管理的长期成功。研究了公、母猪鹿的分布差异。方法在WPNP及周边采集91份猪鹿组织标本。对单核苷酸多态性(SNP)标记进行测序,并使用8275个SNP的最终数据集进行分析。鉴定了一级、二级和中间亲缘关系对,并评估了这些亲缘关系对之间的地理距离,以确定亲缘关系对之间的距离,从而推断扩散。评估了男性和女性样本之间的空间自相关性,以衡量性别偏倚分散的影响。在不同的地点只发现了7个二阶相对对,最远的对之间的距离为30公里。然而,大多数站点间的对间距离为~5 ~ 10 km。性别偏倚分散分析表明,鹿的运动不受性别的强烈影响。结论尽管WPNP中的猪鹿具有遗传相似性,但大多数样本的亲缘关系并不广泛分布。这表明猪鹿在这个公园的分布是有限的。在WPNP中,通过扩散在被扑杀地点重新定居的猪鹿可能并不常见。亲缘关系分析提供了一种有效的评估当代扩散的方法,可以应用于其他物种来评估景观间的精细迁移。
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引用次数: 1
Population dynamics of chital deer (Axis axis) in northern Queensland: effects of drought and culling 昆士兰北部赤鹿种群动态:干旱和扑杀的影响
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-15 DOI: 10.1071/WR22130
A. Pople, Matt Amos, M. Brennan
ABSTRACT Context Chital deer (Axis axis) are long established in the northern Queensland dry tropics, and at high densities are considered pests by cattle graziers. Cost-effective management is difficult for widespread, fluctuating populations of vertebrate pests such as these deer. Historically, control of chital deer has been limited to recreational and some commercial ground-shooting and trapping. Concerns over chital deer impacts were heightened during drought in 2015 and funding became available for aerial culling. Aim This study set out to determine (1) distribution and abundance, (2) seasonal reproductive output, (3) potential and actual rates of increase and their determinants, and (4) efficient management strategies for chital deer in the northern Queensland dry tropics. Methods In 2014, ~13 000 km2 of the main distribution was surveyed by helicopter. Multiple vehicle ground surveys per year monitored chital deer density on two properties during 2013–2022. Seasonal shot samples of deer on both properties assessed reproductive output during 2014–2016. Aerial surveys during 2016–2020 determined chital deer densities on seven properties, prior to aerial culling on four properties. Finally, the maximum rate of increase of chital deer was calculated from life-history data. Key results Regionally, chital deer are patchily distributed and so are best monitored locally where densities can be >50 deer km−2. Vehicle ground surveys recorded an ~80% decline in chital deer populations on two properties over 7–10 months during drought in early 2015, with a similar rate being recorded by aerial survey at a third site. There was little recruitment during the drought, but the decline was seemingly driven by adult mortality. Aerial shooting further reduced populations by 39–88% to <3 deer km−2 on four properties. Where there was no continuing control, culled populations recovered to pre-cull densities or higher after 2.4 years. One unculled property recovered to its pre-drought density after 6 years. Rates of recovery were at or higher than the maximum annual rate of increase for chital deer estimated here as 26–41%. Conclusions Drought has a lasting effect on this chital deer population, because of the resulting large population decline and the modest rate of any recovery in the absence of culling. Culling can reduce populations to low density, but the removal rate needs to be sustained to suppress future growth. Implications Drought provides a strategic opportunity to further reduce chital deer populations for enduring control. Large reductions are feasible given the clumped dispersion of populations within properties and in the region.
摘要背景头鹿(Axis Axis)在昆士兰州北部干旱热带地区长期存在,高密度时被牧牛者视为害虫。对于像这些鹿这样分布广泛、种群波动的脊椎动物害虫来说,成本效益管理是困难的。从历史上看,对赤鹿的控制仅限于娱乐和一些商业地面射击和诱捕。2015年的干旱加剧了人们对赤鹿影响的担忧,并为空中扑杀提供了资金。目的本研究旨在确定(1)北昆士兰干燥热带地区鹿头的分布和丰度,(2)季节性繁殖产量,(3)潜在和实际增长率及其决定因素,以及(4)有效的管理策略。方法2014年采用直升机对主要分布区域约13000 km2进行调查。2013-2022年期间,每年多次车辆地面调查监测了两个地块的鹿密度。在2014-2016年期间,这两个地区的鹿的季节性射击样本评估了繁殖产量。2016-2020年期间的航空调查确定了7个地点的鹿密度,然后对4个地点进行了空中扑杀。最后根据生活史资料计算出赤鹿的最大增长率。从区域上看,赤鹿呈斑状分布,因此在密度>50鹿km−2的地方监测效果最好。2015年初,车辆地面调查显示,在干旱的7-10个月内,两个地点的赤鹿数量下降了80%,第三个地点的航空调查也记录了类似的下降率。干旱期间几乎没有招募,但下降似乎是由成年人死亡率驱动的。空中射击进一步减少了39-88%的种群,在四个属性上小于3鹿公里−2。在没有持续控制的情况下,被扑杀的种群在2.4年后恢复到扑杀前的密度或更高。一个未剔除的地块在6年后恢复到干旱前的密度。据估计,赤鹿的恢复率等于或高于最大年增长率26-41%。结论干旱对鹿群数量的影响是持久的,因为在没有扑杀的情况下,造成鹿群数量的大量下降和缓慢的恢复速度。扑杀可使种群减少到低密度,但需要保持一定的去除率以抑制未来的生长。干旱提供了进一步减少赤鹿种群的战略机会,以实现持久的控制。考虑到物业内和区域内人口的聚集分散,大幅度减少是可行的。
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引用次数: 1
The application of catch–effort models to estimate the efficacy of aerial shooting operations on sambar deer (Cervus unicolor) 利用捕获力模型估算空中射击对沙鹿的有效性
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-06 DOI: 10.1071/WR22123
D. Ramsey, D. McMaster, E. Thomas
ABSTRACT Context Aerial shooting from a helicopter targeting introduced sambar deer (Cervus unicolor) is a key activity being undertaken on public land in the North East and East Gippsland regions of Victoria. However, there is currently little published information on the efficacy of aerial shooting for reducing sambar deer populations in Australia. Aim The aims of this study were to analyse the operational data collected during an aerial shooting program in eastern Victoria, to assess the efficacy of aerial shooting at reducing sambar deer density and to inform management decisions on the required intensity of aerial shooting to achieve target densities. Methods Operational data (locations of all shot animals as well as aerial search effort) were analysed from 10 sites using a Bayesian generalised catch–effort model, which allowed for population changes between five periods of intensive control. The model allowed estimates of initial and residual abundance for each site to be made from the catch–effort data, which were used to estimate the efficacy of aerial shooting. Estimates of the detection rate of deer, which were allowed to vary with removal occasion and site, were then used to estimate the amount of aerial search effort required to reduce population densities by various proportional amounts. Key results Aerial shooting resulted in population reductions of 50–70% of sambar deer at four sites where aerial search intensities per unit area were highest. However, results at the remaining sites suggest that sambar deer densities have either remained static or increased over the five periods of aerial control. Recruitment of sambar deer between control periods, which was strongly influenced by study site elevation and season, was largely responsible for eroding reductions achieved by aerial shooting. Conclusions Catch–effort models applied to operational data collected during aerial shooting programs can be used to estimate control efficacy without the need for additional monitoring. Our analysis suggests that sufficiently high search intensities, around 1.4 km of search effort per km2 of habitat in each of five removal occasions, would need to be applied to achieve at least a 50% reduction in sambar deer densities.
摘要背景:直升机空中射击是维多利亚州东北部和东吉普斯兰地区公共土地上的一项关键活动。然而,目前很少有关于空中射击对减少澳大利亚山鹿数量的有效性的公开信息。本研究的目的是分析在维多利亚州东部的一个空中射击项目中收集的操作数据,评估空中射击在降低鹿密度方面的效果,并为管理决策提供所需的空中射击强度以达到目标密度。方法采用贝叶斯广义捕获努力模型分析10个站点的操作数据(所有被射击动物的位置以及空中搜索努力),该模型考虑了5个强化控制期间的种群变化。该模型允许根据捕获量数据估计每个地点的初始丰度和剩余丰度,这些数据用于估计空中射击的有效性。鹿的检出率的估计值,允许随移除场合和地点的不同而变化,然后用来估计按不同比例减少种群密度所需的空中搜索工作量。主要结果在单位面积空中搜索强度最高的四个地点,空中射击导致鹿的数量减少了50-70%。然而,其余地点的结果表明,在空中控制的五个时期内,鹿的密度要么保持不变,要么增加。在两个对照期之间,沙鹿的招募受研究地点海拔和季节的强烈影响,这在很大程度上是由空中射击造成的侵蚀减少的原因。结论将捕获力模型应用于航拍项目中收集的作战数据,可以在不需要额外监测的情况下估计控制效果。我们的分析表明,足够高的搜索强度,即在五次迁移中每平方公里的搜索力度约为1.4公里,将需要实现至少50%的鹿密度减少。
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引用次数: 1
Finding Ngabi (Hemiaspis damelii): factors affecting the use of modified floodplain wetlands by an endangered snake 发现阿坝蛇:影响一种濒危蛇利用改良洪泛区湿地的因素
IF 1.9 3区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-03-10 DOI: 10.1071/wr22147
D. Michael, D. Nimmo, E. Stevens, T. Schlen, S. Wassens
ABSTRACT Context. River regulation, coupled with climate change, has caused significant declines in global freshwater biodiversity. In Australia, water extraction within the Murray–Darling Basin (MDB) has reduced the frequency, extent and duration with which floodplains are inundated, resulting in widespread declines in wetland-dependent biodiversity, including reptiles. The endangered Ngabi (Hemiaspis damelii) is associated with floodplain systems in the MDB, yet its distribution and ecological requirements are poorly understood, hampering conservation actions. Aims. We sought to validate an assumption that Ngabi is associated with wetland vegetation communities before investigating factors affecting its probability of detection in the lower Murrumbidgee catchment in southern New South Wales. We predicted Ngabi occurrence patterns would relate to frog abundance, wetland hydrology, microhabitat attributes and meteorological variables. Methods. We compared Ngabi observations from 16 paired wetland and dryland vegetation transects to evaluate associations with vegetation type. We then used generalised linear mixed models to relate snake presence and absence to prey (frog abundance), microhabitat (logs and ground cover), wetland hydrology (water depth and inundation frequency) and meteorological conditions, using 12 repeat surveys between September 2018 and March 2021. Key results. Fifty-eight snakes were observed at five of eight wetlands during the study. Ngabi was exclusively recorded in river red gum/spike rush or lignum vegetation communities, and was absent from sandhill woodland or chenopod communities. The probability of detecting Ngabi increased with ambient temperature and weakly with wetland inundation frequency, but not frog abundance, microhabitat attributes or year. Conclusions. Ngabi is strongly associated with floodplain vegetation communities and, to some extent, frequently inundated wetlands in southern NSW, suggesting water management agencies should incorporate threatened floodplain snake species into future wetland management plans. The use of environmental water to restore aspects of flow regimes, improve wetland health and aquatic diversity is likely to benefit other wetland-dependent snake populations across the MDB. Implications. The positive relationship between Ngabi detections and ambient temperature will be important for designing an effective monitoring program for the species across the MDB. Furthermore, our findings provide insight into the benefits of using environmental water to create wetland refuges to maintain floodplain snake populations during droughts.
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引用次数: 0
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Wildlife Research
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