Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100345
Emily Oi YingWong, Man Hin Leung, Nan Yang, Jiangli Ren, Shouling Xu, Supna Nair, Kathy L Li, Zhi-yongWang, Al, Burlingame, Ning Li, Yi Liao, Sean Chin Chan, E. Welsh, B. Fang, J. Koomen, Derek R Duckett, E. Haura, Andrii Monastyrskyi, U. Rix
{"title":"Discovery of GSTZ1 as a novel target by using fully functionalized fragment-like probes and chemical proteomics","authors":"Emily Oi YingWong, Man Hin Leung, Nan Yang, Jiangli Ren, Shouling Xu, Supna Nair, Kathy L Li, Zhi-yongWang, Al, Burlingame, Ning Li, Yi Liao, Sean Chin Chan, E. Welsh, B. Fang, J. Koomen, Derek R Duckett, E. Haura, Andrii Monastyrskyi, U. Rix","doi":"10.1016/j.mcpro.2022.100345","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100345","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"233 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121865198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100338
{"title":"Direct DIA database search with PEAKS Online XPro increases HLA-I peptide identification and bypasses the requirement for large spectral libraries","authors":"","doi":"10.1016/j.mcpro.2022.100338","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100338","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134275471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100382
Ajay Kumar, M. Midha, Jiefu Li, Shuo Han, Qijing Xie, S. A. Shuster, Hongjie Li, N. Udeshi, Tanya Svinkina, Dominique, K. Carey, D. Mani, Chuanyun Xu, Ricardo Guajardo, U. Chon, David Luginbuhl, C. McLaughlin, Yukari H. Takeo, Tongchao Li, Daniel Orlin, Miley C. Hu, Sayeh Kohani, BingWu, Anthony Xie, Pornchai, Kaewsapsak, Swetha E. Murthy, S. Quake, S. Carr, A. Ting, Liqun Luo
{"title":"In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology","authors":"Ajay Kumar, M. Midha, Jiefu Li, Shuo Han, Qijing Xie, S. A. Shuster, Hongjie Li, N. Udeshi, Tanya Svinkina, Dominique, K. Carey, D. Mani, Chuanyun Xu, Ricardo Guajardo, U. Chon, David Luginbuhl, C. McLaughlin, Yukari H. Takeo, Tongchao Li, Daniel Orlin, Miley C. Hu, Sayeh Kohani, BingWu, Anthony Xie, Pornchai, Kaewsapsak, Swetha E. Murthy, S. Quake, S. Carr, A. Ting, Liqun Luo","doi":"10.1016/j.mcpro.2022.100382","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100382","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"73 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126164294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100464
Xu Zhang, Ratna R. Thangudu, P. Rudnick, M. Holck, M. MacCoss, N. Edwards, Peter McHarvey, K. Ketchum, Sudha Venkatachan, J. Otridge, Emi Casas-Silva, Erika Kim, Henry Rodriguez, M. V. Bentum, Henrik Zauber, B. Klinger, Mohamed Haji, Philipp Mertins, N. Blüthgen, M. Selbach
{"title":"Profiling the cellular signalling state by targeted phoshoproteomics","authors":"Xu Zhang, Ratna R. Thangudu, P. Rudnick, M. Holck, M. MacCoss, N. Edwards, Peter McHarvey, K. Ketchum, Sudha Venkatachan, J. Otridge, Emi Casas-Silva, Erika Kim, Henry Rodriguez, M. V. Bentum, Henrik Zauber, B. Klinger, Mohamed Haji, Philipp Mertins, N. Blüthgen, M. Selbach","doi":"10.1016/j.mcpro.2022.100464","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100464","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"92 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126195951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100383
{"title":"Post-Deconvolution MS/MS Spectra Extraction with Data-Independent Acquisition for Comprehensive Profiling of Urinary Conjugated Metabolome","authors":"","doi":"10.1016/j.mcpro.2022.100383","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100383","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128831576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100332
Martin Frejno, D. P. Zolg, Tobias Schmidt, Siegfried Gessulat, Michael Graber, F. Seefried, Magnus Rathke-Kuhnert, Samia Ben Fredj, Patroklos, Samaras, Kai Fritzemeier, Frank Berg, Waqas Nasir, D. Horn, B. Delanghe, Christoph Henrich, B. Kuster, Mathias Wilhelm, Hannah Boekweg
{"title":"An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra","authors":"Martin Frejno, D. P. Zolg, Tobias Schmidt, Siegfried Gessulat, Michael Graber, F. Seefried, Magnus Rathke-Kuhnert, Samia Ben Fredj, Patroklos, Samaras, Kai Fritzemeier, Frank Berg, Waqas Nasir, D. Horn, B. Delanghe, Christoph Henrich, B. Kuster, Mathias Wilhelm, Hannah Boekweg","doi":"10.1016/j.mcpro.2022.100332","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100332","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"123 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122483308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-08-01DOI: 10.1016/j.mcpro.2022.100333
{"title":"Computational challenges of identification and quantification algorithms in single-cell proteomic data.","authors":"","doi":"10.1016/j.mcpro.2022.100333","DOIUrl":"https://doi.org/10.1016/j.mcpro.2022.100333","url":null,"abstract":"","PeriodicalId":325853,"journal":{"name":"Molecular & Cellular Proteomics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115159605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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