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Using Deep Learning with Large Dataset of Microscope Images to Develop an Automated Embryo Grading System 利用深度学习和大型显微镜图像数据集开发胚胎自动分级系统
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219500051
Tsung-Jui Chen, Wei-Lin Zheng, Chun-Hsin Liu, I-Hang Huang, H. Lai, Mark Liu
The assessment of embryo viability for in vitro fertilization (IVF) is mainly based on subjective visual analysis, with the limitation of intra- and inter-observer variation and a time-consuming task. In this study, we used deep learning with large dataset of microscopic embryo images to develop an automated grading system for embryo assessment. This study included a total of 171,239 images from 16,201 embryos of 4,146 IVF cycles at Stork Fertility Center (https://www.e-stork.com.tw) from March 6, 2014 to April 13, 2018. The images were captured by inverted microscope (Zeiss Axio Observer Z1) at 112 to 116 hours (Day 5) or 136 to 140 hours (Day 6) after fertilization. Using a pre-trained network trained on the ImageNet dataset as convolution base, we applied Convolutional Neural Network (CNN) on embryo images, using ResNet50 architecture to fine-tune ImageNet parameters. The predicted grading results was compared with the grading results from trained embryologists to evaluate the model performance. The images were labeled by trained embryologists, based on Gardner’s grading system: blastocyst development ranking from 3–6, ICM quality as A, B, or C; and TE quality as a, b, or c. After pre-processing, the images were divided into training, validation, and test groups, in which 60% were allocated to the training group, 20% to the validation group, and 20% to the test group. The ResNet50 algorithm was trained on the 60% images allocated to the training group, and the algorithm’s performance was evaluated using the 20% images allocated to the test group. The results showed an average predictive accuracy of 75.36% for the all three grading categories: 96.24% for blastocyst development, 91.07% for ICM quality, and 84.42% for TE quality. To the best of our knowledge, this is the first study of an automatic embryo grading system using large dataset from Asian population. Combing the promising results obtained in this study with time-lapse microscope system integrated with IVF Electronic Medical Record platform, a fully automated and non-invasive pipeline for embryo assessment will be achieved.
体外受精(IVF)胚胎活力的评估主要基于主观的视觉分析,受观察者内部和观察者之间差异的限制,并且任务耗时。在这项研究中,我们使用深度学习和大量微观胚胎图像数据集来开发胚胎评估的自动分级系统。本研究包括2014年3月6日至2018年4月13日在Stork Fertility Center (https://www.e-stork.com.tw)进行的4,146个试管婴儿周期的16,201个胚胎的171,239张图像。在受精后112 ~ 116小时(第5天)或136 ~ 140小时(第6天)用倒置显微镜(Zeiss Axio Observer Z1)拍摄图像。以ImageNet数据集训练的预训练网络为卷积基础,将卷积神经网络(CNN)应用于胚胎图像,使用ResNet50架构对ImageNet参数进行微调。将预测的分级结果与训练有素的胚胎学家的分级结果进行比较,以评估模型的性能。图像由训练有素的胚胎学家根据加德纳分级系统进行标记:囊胚发育等级为3-6,ICM质量为A、B或C;将图像预处理后分为训练组、验证组和测试组,其中训练组占60%,验证组占20%,测试组占20%。ResNet50算法在分配给训练组的60%图像上进行训练,并使用分配给测试组的20%图像评估算法的性能。结果显示,所有三个分级类别的平均预测准确率为75.36%:囊胚发育为96.24%,ICM质量为91.07%,TE质量为84.42%。据我们所知,这是第一个使用亚洲人口大数据集的胚胎自动分级系统的研究。将本研究成果与结合IVF电子病历平台的延时显微镜系统相结合,将实现一个全自动化、无创的胚胎评估管道。
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引用次数: 44
Vitamin D and Infertility: The Evidence 维生素D和不孕:证据
Pub Date : 2019-04-22 DOI: 10.1142/S266131821950004X
M. Hornstein
Vitamin D is a lipid soluble vitamin synthesized by the skin upon exposure to UV light. Approximately 10–20% of vitamin D comes from dietary sources and 25OH-D is its circulating form. Vitamin D receptors are found in reproductive tissues including ovary, uterus, and endometrium permitting investigators to hypothesize a role for vitamin D in reproduction. Indeed, a number of animal studies provide evidence of vitamin D’s importance in fertility. Studies in humans, however, generally have not supported an effect of vitamin D on fertility outcomes. Several retrospective cohort studies did not demonstrate an association between vitamin D levels and pregnancy. Similarly, one study did not find correlation between anovulatory infertility and vitamin D intake. Very low levels of vitamin D, however, were associated with miscarriage in another study. A large meta-analysis of 11 studies and 2700 women did show an improvement in IVF success rates in those with higher levels of vitamin D. Finally, two small studies on vitamin D supplementation and pregnancy did not show a benefit of increasing vitamin D intake. In conclusion, the literature at best shows a minimal impact of vitamin D on infertility and IVF outcomes.
维生素D是一种脂溶性维生素,由皮肤在紫外线照射下合成。大约10-20%的维生素D来自饮食来源,25OH-D是其循环形式。维生素D受体存在于生殖组织中,包括卵巢、子宫和子宫内膜,这使得研究人员可以假设维生素D在生殖中的作用。事实上,许多动物研究提供了维生素D对生育能力的重要性的证据。然而,对人类的研究通常没有支持维生素D对生育结果的影响。几项回顾性队列研究并未证明维生素D水平与怀孕之间存在关联。同样,一项研究也没有发现无排卵性不孕和维生素D摄入之间的联系。然而,在另一项研究中,维生素D水平过低与流产有关。一项针对11项研究和2700名女性的大型荟萃分析确实显示,维生素D水平较高的女性体外受精成功率有所提高。最后,两项关于维生素D补充和怀孕的小型研究并未显示增加维生素D摄入量有任何好处。总之,文献最多只能显示维生素D对不孕症和体外受精结果的影响很小。
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引用次数: 6
The Place of In Vitro Maturation in Assisted Reproductive Technology 体外成熟在辅助生殖技术中的地位
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219300022
L. Vuong, T. Ho, R. Gilchrist, J. Smitz
In vitro maturation (IVM) is an assisted reproductive technology (ART) whereby immature cumulus-oocyte complexes are collected and matured in vitro, without need for controlled ovarian stimulation and ovulation triggering. Advantages of IVM over in vitro fertilization (IVF) include mild or no stimulation, lower medication costs and less patient burden. However, early clinical outcomes with IVM were suboptimal. More recently, clinical studies reported live birth rates after IVM of about 40%. New IVM culture systems are being used to improve the efficacy of IVM. These have been in widespread use for animals for many years and are now showing promise in the clinical setting. Patients more likely to benefit from IVM over IVF include those at risk of OHSS (e.g. women with polycystic ovary syndrome), when the time for ovarian stimulation is limited, or where sustained elevations of estradiol are contraindicated (e.g. oncofertility indications). The main barrier to use of IVM to date was its relative efficacy compared with IVF, and there have also been concerns over the health of infants born following IVM. However, no differences in congenital abnormalities between IVM and other ARTs have been identified. In addition, there is a lack of both experience and standardized protocols. Strategies to overcome barriers to the use of IVM include better training for clinicians, more and better funded research in the field, and improved recognition of IVM by fertility specialists. Overall, IVM offers a valuable alternative for ART in select patient populations. New approaches to IVM appear to have the potential to achieve pregnancy outcomes equivalent to those after IVF. Increasing the use of IVM in the future can be achieved with improved training and education for fertility specialists, and increased funding for IVM research, with the ultimate goal of improving fertility outcomes.
体外成熟(IVM)是一种辅助生殖技术(ART),通过收集未成熟的卵母细胞复合物并在体外成熟,无需控制卵巢刺激和排卵触发。与体外受精(IVF)相比,IVM的优点包括轻度或无刺激、较低的药物成本和较少的患者负担。然而,IVM的早期临床结果并不理想。最近,临床研究报告试管婴儿后的活产率约为40%。新的IVM培养系统正在被用于提高IVM的功效。这些已经在动物身上广泛应用多年,现在在临床环境中显示出希望。IVM比IVF更有可能受益的患者包括那些有OHSS风险的患者(如多囊卵巢综合征妇女),当卵巢刺激时间有限时,或雌二醇持续升高是禁忌症(如肿瘤生育指征)。迄今为止,使用试管婴儿的主要障碍是其与试管婴儿相比的相对疗效,并且对试管婴儿后出生的婴儿的健康也存在担忧。然而,IVM和其他art在先天性异常方面没有发现差异。此外,还缺乏经验和标准化协议。克服使用试管婴儿技术障碍的策略包括对临床医生进行更好的培训,在该领域开展更多和更好的资助研究,以及提高生育专家对试管婴儿技术的认识。总体而言,IVM在选定的患者群体中为抗逆转录病毒治疗提供了一种有价值的替代方案。IVM的新方法似乎有可能达到与体外受精后相同的妊娠结果。通过改进对生育专家的培训和教育,以及增加对IVM研究的资助,以改善生育结果为最终目标,可以在未来增加IVM的使用。
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引用次数: 19
Message from Professor P. C. Wong 黄炳昌教授的致辞
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219710026
P. Wong
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引用次数: 0
Randomised Trial of Lipiodol Uterine Bathing Effect (LUBE) in Women with Endometriosis-Related Infertility 脂醇子宫浴对子宫内膜异位症相关不孕症妇女的随机试验
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219500063
N. Johnson, N. Johnson, S. Baidya, S. Jessup, C. Print, A. Muthukaruppan, L. Chamley, W. Hadden, M. L. Hull, Sunali Y Mehta, A. Shelling
BACKGROUND: We aimed to assess whether lipiodol alters endometrial gene expression through a uterine bathing effect that might enhance receptivity to embryo implantation. METHODS: An open-label randomised controlled trial design in a single-centre tertiary infertility service. Twelve women with endometriosis (n [Formula: see text] 11) or previous successful lipiodol procedure (n [Formula: see text] 1) were randomised to receive immediate or delayed lipiodol hysterosalpingography, followed by endometrial biopsy. Endometrial samples were assessed for gene expression, using Affymetrix microarrays and validation studies using reverse transcriptase quantitative polymerase chain reaction analysis. Subsequent endometrial gene expression responses to treatment and clinical fertility outcomes were assessed. RESULTS: Eleven of 12 women had successful endometrial sampling procedures. Nine women had successful pregnancies within the 9-month follow-up phase. Following lipiodol bathing we identified 20 down-regulated and 13 up-regulated genes with p [Formula: see text] 0.05 and with magnitude of change [Formula: see text]1.5-fold in at least three of the four women, with osteopontin being the only gene down-regulated in all four women. CONCLUSIONS: This study supports the concept of a uterine bathing effect of lipiodol altering endometrial biology and gene expression. Whether regulation of inflammation and immune response pathways by lipiodol might contribute to an increase in endometrial receptivity to embryo implantation merits further investigation.
背景:我们的目的是评估脂醇是否通过子宫沐浴效应改变子宫内膜基因表达,从而提高胚胎着床的接受性。方法:在单中心三期不孕症服务中采用开放标签随机对照试验设计。12名患有子宫内膜异位症(n[公式:见文本]11)或既往成功行过类脂醇手术(n[公式:见文本]1)的女性随机分组,接受即时或延迟类脂醇子宫输卵管造影术,随后进行子宫内膜活检。使用Affymetrix微阵列评估子宫内膜样本的基因表达,并使用逆转录酶定量聚合酶链式反应分析进行验证研究。随后评估子宫内膜基因表达对治疗的反应和临床生育结果。结果:12名妇女中有11名子宫内膜取样手术成功。9名妇女在9个月的随访期内成功怀孕。在脂醇浴后,我们在四名女性中至少有三名女性中发现了20个下调基因和13个上调基因,p[公式:见文本]0.05,变化幅度[公式:见文本]1.5倍,骨桥蛋白是所有四名女性中唯一下调的基因。结论:本研究支持了脂醇改变子宫内膜生物学和基因表达的子宫浴效应的概念。脂醇对炎症和免疫反应通路的调节是否有助于提高子宫内膜对胚胎着床的接受性,值得进一步研究。
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引用次数: 3
Zika Virus Infection and Implications for Reproduction 寨卡病毒感染及其对生殖的影响
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219300010
M. Giles, S. Cole
Zika virus infection during pregnancy can have devastating effects on the foetus leading to congenital Zika syndrome. It is relevant therefore for couples living in countries with endemic Zika virus to understand the strategies they can utilise to reduce the chance of infection. In addition, couples planning pregnancy, or who are already pregnant, travelling to countries with Zika virus need to be informed of the potential risk and implications for future reproductive planning.
怀孕期间感染寨卡病毒会对胎儿造成毁灭性影响,导致先天性寨卡综合征。因此,对于生活在寨卡病毒流行国家的夫妇来说,了解他们可以用来减少感染机会的策略是有意义的。此外,计划怀孕或已经怀孕的夫妇前往寨卡病毒国家旅行时,需要了解潜在风险和对未来生殖计划的影响。
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引用次数: 0
A Comparison of the Miscarriage and Live Birth Rate for Frozen Embryo Transfer According to Two Endometrial Preparations: Natural or Primed with Estrogens 两种子宫内膜制剂:天然子宫内膜与雌激素灌注子宫内膜对冷冻胚胎移植流产率和活产率的比较
Pub Date : 2019-04-22 DOI: 10.1142/S2661318219500038
S. Mubarak, S. Acharyya, V. Viardot-Foucault, H. Tan, J. Phoon
Objective The primary objective is to compare miscarriage rates in frozen-thawed embryo transfer (FET) cycles, according to the endometrial preparation used either artificial through the administration of exogenous estrogen and progesterone or natural without any treatment, during a spontaneous ovulatory cycle. The secondary objective is to compare the live birth rates between the two endometrial preparations. Study design This is a retrospective study done at KK Women’s and Children’s Hospital Singapore. We included women who underwent FET cycles either with hormone replacement treatment (HRT) or no treatment (natural) for the endometrial preparation, regardless of their cycle number, from 1 January 2011 till 31 December 2015. Results A total of 2,752 FET cycles were included in our analysis. The natural cycle followed by vaginal progesterone support was used in 1,221 cycles and the HRT cycle with estrogen and vaginal progesterone was used in 1,531 cycles. There is a significantly higher miscarriage rate in the HRT group (38.4%) compared with the natural group (22.3%). The live birth rate is significantly higher in the natural group (22.8%) compared with the HRT group (17.3%). The multivariate analysis further shows that the HRT therapy is independently associated with an increased risk of miscarriage (adjusted odds ratio 2.05; 95% confidence interval 1.45–2.90; [Formula: see text] <0.001) and hence lower odds of live birth (adjusted odds ratio 0.69; 95% confidence interval 0.56–0.84; [Formula: see text] <0.001) after adjusting for the patient’s age at which the embryo was cryopreserved, race, body mass index, main indications for in vitro fertilization, number of embryos transferred and type of embryo transferred. Conclusion We have shown in this study that the miscarriage rate is higher in the HRT FET group and that this increased miscarriage rate translates into a lower live birth rate in the HRT group. Thus, we conclude that patients with regular menstrual cycles should be offered a natural FET cycle to achieve better outcomes in terms of live birth rate and reducing the miscarriage rate.
主要目的是比较在自然排卵周期中,根据使用外源性雌激素和黄体酮的人工子宫内膜准备或未经任何处理的自然子宫内膜准备,冷冻解冻胚胎移植(FET)周期的流产率。次要目的是比较两种子宫内膜制剂之间的活产率。研究设计这是一项在新加坡KK妇女儿童医院进行的回顾性研究。从2011年1月1日至2015年12月31日,我们纳入了接受FET周期的女性,无论是激素替代治疗(HRT)还是未接受子宫内膜准备治疗(自然),无论其周期数如何。结果共纳入了2752个FET周期。自然周期加阴道黄体酮支持1221个周期,雌激素加阴道黄体酮HRT周期1531个周期。HRT组的流产率(38.4%)明显高于自然组(22.3%)。自然组的活产率(22.8%)明显高于HRT组(17.3%)。多因素分析进一步显示,HRT治疗与流产风险增加独立相关(校正优势比2.05;95%置信区间1.45-2.90;[公式:见正文]<0.001),因此活产的几率较低(调整后的优势比0.69;95%置信区间0.56 ~ 0.84;[公式:见文]<0.001),在对患者冷冻保存胚胎时的年龄、种族、体重指数、体外受精的主要适应证、移植的胚胎数量和移植的胚胎类型进行调整后。结论:本研究表明,HRT FET组的流产率较高,而这种增加的流产率转化为HRT组较低的活产率。因此,我们的结论是,对于月经周期正常的患者,应给予自然的FET周期,以获得更好的活产率和减少流产率。
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引用次数: 2
Foreword by Professor Gab Kovacs 前言由Gab Kovacs教授撰写
Pub Date : 2019-03-01 DOI: 10.1142/S2661318219010011
Amanda Kovacs
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引用次数: 0
A Tale of Two Hormones 《两种荷尔蒙的故事
Pub Date : 2019-03-01 DOI: 10.1142/S2661318219500026
T. Foran
The development of the steroid hormones currently used in contraception and menopausal hormone replacement provides an interesting story in terms of brilliant research, international rivalry, major advances and sheer serendipity. This paper provides a historical perspective on the use of oestrogens and progestogens in clinical practice from the 1920s until the present day.
目前用于避孕和绝经期激素替代的类固醇激素的发展提供了一个有趣的故事,包括辉煌的研究,国际竞争,重大进展和纯粹的意外发现。本文提供了从20世纪20年代到现在在临床实践中使用雌激素和孕激素的历史观点。
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引用次数: 0
Message from Editor-in-Chief 总编辑寄语
Pub Date : 2010-01-01 DOI: 10.1142/s2661318221010015
This article discusses the development of premedical and preclinical education in the Netherlands between 1865, when the ‘unity of licensure’ was achieved, and 1965, a year which marked the beginning of a series of innovations which resulted in a complete overhaul of the classical medical curriculum. It will be argued that Dutch premedical and preclinical education during the century between 1865 and 1965 was featured by a comprehensive treatment of the natural and preclinical sciences in order to provide students with a ‘solid foundation’ upon which their clinical knowledge and, eventually, their clinical competence should be built. However, the curriculum suffered from several major shortcomings: it was educationally insufficient, it lacked internal dynamics, it was extremely compartmentalized, and it became increasingly overloaded. As a consequence of both rigid legislation and an obsolete educational philosophy, these curricular shortcomings could not adequately be dealt with. Consequently, in the early 1960s, when the number of medical students exploded, the curriculum more or less imploded under its own weight. New legislation and the foundation of two new medical schools in the 1960s and 1970s, which could design their curriculum almost ‘from scratch,’ finally paved the way for implementing the major curricular innovations at the time already long overdue. Development and organization of medical education in the Netherlands Nineteenth-century academic medical education in the Netherlands closely resembled that in Germany, the Nordic countries, Austria-Hungary and Switzerland, where it had developed from the work of lecturing university professors in the Middle Ages. In the second half of the 17 century and the first decades of the 18 century, Dutch medical schools ranked at the top of contemporary medical education; for example, Herman Boerhaave (1668-1738) was not only an excellent clinical teacher, but also developed the direct precursor of the ‘discipline-based curriculum,’ later adopted by many American medical schools as well, which dominated medical education until the 1970s. Boerhaave’s ideal curriculum consisted of a premedical phase (dedicated to mathematics and natural sciences), a preclinical phase (which featured animal and human dissection, post-mortem examinations, artificially produced diseases in animals, and knowledge of medicines) and finally a clinical phase, in which the student would be allowed at the bedside. After Boerhaave’s death, his system of clinical education gradually passed into disuse, and by the early 19th century, the French and English medical faculties had widely surpassed the Dutch. Like elsewhere, there was at the time in the Netherlands an extensive ‘second class’ of medical practitioners, predominantly trained by apprenticeship or at so-called ‘Clinical Schools’: rural and urban surgeons, rural and urban general practitioners, physicians who were only allowed to practice on board of ships or in the a
本文讨论了荷兰在1865年之间的医学前和临床前教育的发展,当时实现了“执照统一”,1965年标志着一系列创新的开始,这些创新导致了经典医学课程的彻底改革。在1865年至1965年间,荷兰医学预科和临床预科教育的特点是对自然科学和临床预科科学进行全面的治疗,以便为学生提供一个“坚实的基础”,在这个基础上,他们的临床知识,最终,他们的临床能力应该建立起来。然而,该课程有几个主要缺点:教育方面的不足,缺乏内在动力,极其分割,而且越来越超负荷。由于严格的立法和过时的教育理念,这些课程缺陷无法得到充分解决。因此,在20世纪60年代初,当医学生人数激增时,课程或多或少在自身的重压下崩溃了。在20世纪60年代和70年代,新的立法和两所新医学院的成立,几乎可以“从零开始”设计他们的课程,最终为实施早就应该实施的重大课程创新铺平了道路。荷兰医学教育的发展和组织19世纪荷兰的学术医学教育与德国、北欧国家、奥匈帝国和瑞士的医学教育非常相似,都是从中世纪大学教授的授课工作发展而来的。在17世纪下半叶和18世纪前几十年,荷兰医学院在当代医学教育中名列前茅;例如,赫尔曼·布尔哈夫(Herman Boerhaave, 1668-1738)不仅是一位优秀的临床教师,而且还是“以学科为基础的课程”的直接先驱,后来被许多美国医学院采用,直到20世纪70年代,这种课程一直主导着医学教育。布尔哈夫的理想课程包括医学前阶段(专注于数学和自然科学),临床前阶段(包括动物和人体解剖,尸检,动物人工制造的疾病,以及药物知识),最后是临床阶段,在这个阶段,学生将被允许在床边。布尔哈夫去世后,他的临床教育体系逐渐被废弃,到19世纪初,法国和英国的医学院已经远远超过了荷兰。与其他地方一样,当时荷兰有大量的"二等"医疗从业人员,主要通过学徒制或所谓的"临床学校"接受培训:农村和城市外科医生,农村和城市全科医生,只允许在船上或军队中执业的医生,以及助产士。另一方面,受过学术教育的医生并不认为自己主要是医生,而是学识渊博、受过良好教育的绅士,他们尽量远离医疗实践中更令人讨厌的方面,比如直接给病人做身体检查。相反,他们更喜欢的行为是倾听病人的故事,并在此基础上,为富有的客户开出复杂而昂贵的处方(众所周知的“镀金药丸”)。如果切割
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引用次数: 0
期刊
Fertility Reproduction
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