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Regulation of Tumor Metabolome by Long Non-Coding RNAs 长链非编码rna对肿瘤代谢组的调控
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.55233/1750-2187-16-1
Revathy Nadhan, D. Dhanasekaran
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引用次数: 0
Downregulation of Signal Regulatory Protein Alfa 1 in K562 Cells Results in the Aberrant Cell Growth in Low Serum Culture 低血清培养下K562细胞信号调节蛋白α 1的下调导致细胞生长异常
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.5334/1750-2187-15-1
Shin-ichiro Takahashi
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引用次数: 0
Basal Signalling Through Death Receptor 5 and Caspase 3 Activates p38 Kinase to Regulate Serum Response Factor (SRF)-Mediated MyoD Transcription. 通过死亡受体 5 和 Caspase 3 发出的基础信号可激活 p38 激酶,从而调节血清反应因子 (SRF) 介导的 MyoD 转录。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-05-08 DOI: 10.5334/1750-2187-14-1
Jason A Ross, Brianna Barrett, Victoria Bensimon, Girish Shukla, Crystal M Weyman

We have previously reported that stable expression of a dominant negative Death Receptor 5 (dnDR5) in skeletal myoblasts results in decreased basal caspase activity and decreased mRNA and protein expression of the muscle regulatory transcription factor MyoD in growth medium (GM), resulting in inhibited differentation when myoblasts are then cultured in differentiation media (DM). Further, this decreased level of MyoD mRNA was not a consequence of altered message stability, but rather correlated with decreased acetylation of histones in the distal regulatory region (DRR) of the MyoD extended promoter known to control MyoD transcription. As serum response factor (SRF) is the transcription factor known to be responsible for basal MyoD expression in GM, we compared the level of SRF binding to the non-canonical serum response element (SRE) within the DRR in parental and dnDR5 expressing myoblasts. Herein, we report that stable expression of dnDR5 resulted in decreased levels of serum response factor (SRF) binding to the CArG box in the SRE of the DRR. Total SRF expression levels were not affected, but phosphorylation indicative of SRF activation was impaired. This decreased SRF phosphorylation correlated with decreased phosphorylation-induced activation of p38 kinase. Moreover, the aforementioned signaling events affected by expression of dnDR5 could be appropriately recapitulated using either a pharmacological inhibitor of caspase 3 or p38 kinase. Thus, our results have established a signaling pathway from DR5 through caspases to p38 kinase activation, to SRF activation and the basal expression of MyoD.

我们以前曾报道过,在骨骼肌母细胞中稳定表达显性阴性死亡受体5(dnDR5)会导致生长培养基(GM)中的基础Caspase活性降低、肌肉调控转录因子MyoD的mRNA和蛋白表达量减少,从而抑制了肌母细胞在分化培养基(DM)中的分化。此外,MyoD mRNA水平的降低并不是信息稳定性改变的结果,而是与已知控制MyoD转录的MyoD扩展启动子远端调节区(DRR)组蛋白乙酰化的降低有关。由于血清反应因子(SRF)是已知在转基因中负责MyoD基础表达的转录因子,我们比较了亲代和表达dnDR5的肌母细胞中SRF与DRR内的非经典血清反应元件(SRE)的结合水平。在此,我们报告了稳定表达 dnDR5 会导致血清反应因子(SRF)与 DRR SRE 中 CArG 框的结合水平下降。SRF的总表达水平未受影响,但SRF活化的磷酸化却受到了影响。SRF 磷酸化的减少与磷酸化诱导的 p38 激酶活化的减少相关。此外,上述受dnDR5表达影响的信号转导事件可通过使用caspase 3或p38激酶的药理抑制剂适当地再现。因此,我们的研究结果建立了一条从DR5通过caspase到p38激酶激活,再到SRF激活和MyoD基础表达的信号通路。
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引用次数: 0
ER Stress Activates the TOR Pathway through Atf6. 内质网应激通过Atf6激活TOR通路。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2018-04-23 DOI: 10.5334/1750-2187-13-1
Dylan Allen, Jin Seo

Cellular signaling pathways are often interconnected. They accurately and efficiently regulate essential cell functions such as protein synthesis, cell growth, and survival. The target of rapamycin (TOR) signaling pathway and the endoplasmic reticulum (ER) stress response pathway regulate similar cellular processes. However, the crosstalk between them has not been appreciated until recently and the detailed mechanisms remain unclear. Here, we show that ER stress-inducing drugs activate the TOR signaling pathway in S2R+ Drosophila cells. Activating transcription factor 6 (Atf6), a major stress-responsive ER transmembrane protein, is responsible for ER stress-induced TOR activation. Supporting the finding, we further show that knocking down of both site-1/2 proteases (S1P/S2P), Atf6 processing enzymes, are necessary to connect the two pathways.

细胞信号通路通常是相互连接的。它们准确有效地调节细胞的基本功能,如蛋白质合成、细胞生长和存活。雷帕霉素靶点(TOR)信号通路和内质网(ER)应激反应通路调节类似的细胞过程。然而,它们之间的相互作用直到最近才被认识到,其具体机制尚不清楚。在这里,我们发现内质网应激诱导药物激活了S2R+果蝇细胞中的TOR信号通路。激活转录因子6 (Atf6)是一种主要的应激响应内质网跨膜蛋白,负责内质网应激诱导的TOR激活。为了支持这一发现,我们进一步表明,敲低两个site-1/2蛋白酶(S1P/S2P), Atf6加工酶,是连接这两条途径所必需的。
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引用次数: 22
Transcriptional and Post-Translational Targeting of Myocyte Stress Protein 1 (MS1) by the JNK Pathway in Cardiac Myocytes. 心肌细胞JNK通路中肌细胞应激蛋白1 (MS1)的转录和翻译后靶向
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-12-08 DOI: 10.5334/1750-2187-12-3
Joanna M Hay, Eva S Jordan, Gareth J Browne, Andrew R Bottrill, Sally A Prigent, Martin Dickens

Myocyte Stress Protein 1 (MS1) is a muscle-specific, stress-responsive, regulator of gene expression. It was originally identified in embryonic mouse heart which showed increased expression in a rat model of left ventricular hypertrophy. To determine if MS1 was responsive to other stresses relevant to cardiac myocyte function, we tested if it could be induced by the metabolic stresses associated with ischaemia/reperfusion injury in cardiac myocytes. We found that metabolic stress increased MS1 expression, both at the mRNA and protein level, concurrent with activation of the c-Jun N-terminal Kinase (JNK) signalling pathway. MS1 induction by metabolic stress was blocked by both the transcription inhibitor actinomycin D and a JNK inhibitor, suggesting that activation of the JNK pathway during metabolic stress in cardiac myocytes leads to transcriptional induction of MS1. MS1 was also found to be an efficient JNK substrate in vitro, with a major JNK phosphorylation site identified at Thr-62. In addition, MS1 was found to co-precipitate with JNK, and inspection of the amino acid sequence upstream of the phosphorylation site, at Thr-62, revealed a putative Mitogen-Activated Protein Kinase (MAPK) binding site. Taken together, these data identify MS1 as a likely transcriptional and post-translational target for the JNK pathway in cardiac myocytes subjected to metabolic stress.

肌细胞应激蛋白1 (MS1)是一种肌肉特异性、应激反应性的基因表达调节剂。它最初是在小鼠胚胎心脏中发现的,在大鼠左心室肥厚模型中表现出增加的表达。为了确定MS1是否对与心肌细胞功能相关的其他应激有反应,我们测试了与心肌细胞缺血/再灌注损伤相关的代谢应激是否会诱导MS1。我们发现,代谢应激增加了MS1在mRNA和蛋白水平上的表达,同时激活了c-Jun n末端激酶(JNK)信号通路。代谢应激对MS1的诱导被转录抑制剂放线菌素D和JNK抑制剂阻断,这表明心肌细胞代谢应激时JNK通路的激活导致了MS1的转录诱导。MS1在体外也被发现是一种有效的JNK底物,其主要的JNK磷酸化位点位于Thr-62。此外,MS1被发现与JNK共沉淀,并且检查磷酸化位点上游的氨基酸序列,在Thr-62处,发现了一个假定的丝裂原活化蛋白激酶(MAPK)结合位点。综上所述,这些数据确定MS1可能是代谢应激心肌细胞中JNK通路的转录和翻译后靶标。
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引用次数: 1
Insights into the Shc Family of Adaptor Proteins. 对接头蛋白Shc家族的深入了解。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-05-03 DOI: 10.5334/1750-2187-12-2
Samrein B M Ahmed, Sally A Prigent

The Shc family of adaptor proteins is a group of proteins that lacks intrinsic enzymatic activity. Instead, Shc proteins possess various domains that allow them to recruit different signalling molecules. Shc proteins help to transduce an extracellular signal into an intracellular signal, which is then translated into a biological response. The Shc family of adaptor proteins share the same structural topography, CH2-PTB-CH1-SH2, which is more than an isoform of Shc family proteins; this structure, which includes multiple domains, allows for the posttranslational modification of Shc proteins and increases the functional diversity of Shc proteins. The deregulation of Shc proteins has been linked to different disease conditions, including cancer and Alzheimer's, which indicates their key roles in cellular functions. Accordingly, a question might arise as to whether Shc proteins could be targeted therapeutically to correct their disturbance. To answer this question, thorough knowledge must be acquired; herein, we aim to shed light on the Shc family of adaptor proteins to understand their intracellular role in normal and disease states, which later might be applied to connote mechanisms to reverse the disease state.

适配蛋白的Shc家族是一组缺乏内在酶活性的蛋白质。相反,Shc蛋白拥有不同的结构域,允许它们招募不同的信号分子。Shc蛋白帮助将细胞外信号转译为细胞内信号,然后转译为生物反应。Shc家族的接头蛋白具有相同的结构地形,CH2-PTB-CH1-SH2,这不仅仅是Shc家族蛋白的异构体;这种结构包括多个结构域,允许对Shc蛋白进行翻译后修饰,并增加Shc蛋白的功能多样性。Shc蛋白的失调与不同的疾病有关,包括癌症和阿尔茨海默氏症,这表明它们在细胞功能中起着关键作用。因此,可能会出现一个问题,即Shc蛋白是否可以靶向治疗以纠正其紊乱。要回答这个问题,必须获得全面的知识;在这里,我们的目标是阐明适配蛋白的Shc家族,以了解它们在正常和疾病状态下的细胞内作用,这些作用以后可能被应用于暗示逆转疾病状态的机制。
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引用次数: 32
Anti-proliferative Effect of C3 Exoenzyme in Fibroblasts is Mediated by c-Jun Phosphorylation. c-Jun磷酸化介导C3外泌酶在成纤维细胞中的抗增殖作用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2017-04-03 DOI: 10.5334/1750-2187-12-1
Leonie von Elsner, Sandra Hagemann, Ingo Just, Astrid Rohrbeck

The ADP-ribosyltransferase C3 exoenzyme from C. botulinum selectively inactivates Rho and is therefore often used as an inhibitor for investigations on Rho signaling. Previous studies of our group revealed that C3 inhibited cell proliferation in HT22 cells accompanied by increased transcriptional activities of Sp1 and c-Jun and reduced levels of cyclin D1, p21 and phosphorylated p38. By use of a p38α-deficient and a p38α-expressing control cell line, the impact of p38 on C3-mediated inhibition of cell proliferation and alterations on MAPK signaling was studied by growth kinetic experiments and Western blot analyses. The cell growth of p38α-expressing cells was impaired by C3, while the p38α-deficient cells did not exhibit any C3-induced effect. The activity of the MKK3/6-p38 MAPK signaling cascade as well as the phosphorylation of c-Jun and JNK was reduced by C3 exclusively in the presence of p38α. Moreover, the activity of upstream MAPKKK TAK1 was lowered in the p38α-expressing cells. These results indicated a resistance of p38α-deficient cells to C3-mediated inhibition of cell growth. This anti-proliferative effect was highly associated with the decreased activity of c-Jun and upstream p38 and JNK MAPK signaling as a consequence of the absence of p38α in these cells.

来自肉毒杆菌的adp -核糖基转移酶C3外酶选择性地使Rho失活,因此经常被用作Rho信号研究的抑制剂。本课题组前期研究发现C3抑制HT22细胞增殖,同时Sp1和c-Jun转录活性增加,cyclin D1、p21和磷酸化p38水平降低。利用p38α缺失和p38α表达对照细胞系,通过生长动力学实验和Western blot分析,研究p38对c3介导的细胞增殖抑制和MAPK信号改变的影响。C3对表达p38α的细胞生长有抑制作用,而对缺乏p38α的细胞生长无影响。仅在p38α存在的情况下,C3可降低MKK3/6-p38 MAPK信号级联的活性以及c-Jun和JNK的磷酸化。此外,在p38α-表达细胞中,上游MAPKKK TAK1的活性降低。这些结果表明p38α-缺陷细胞对c3介导的细胞生长抑制具有抗性。这种抗增殖作用与c-Jun和上游p38和JNK MAPK信号活性的降低高度相关,这是p38α在这些细胞中缺失的结果。
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引用次数: 3
MAGI Proteins Regulate the Trafficking and Signaling of Corticotropin-Releasing Factor Receptor 1 via a Compensatory Mechanism. MAGI蛋白通过代偿机制调节促肾上腺皮质激素释放因子受体1的运输和信号传导。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-11-28 DOI: 10.5334/1750-2187-11-5
Maha M Hammad, Henry A Dunn, Stephen S G Ferguson

Corticotropin-releasing factor (CRF) receptor1 (CRFR1) is associated with psychiatric illness and is a proposed target for the treatment of anxiety and depression. Similar to many G protein-coupled receptors (GPCRs), CRFR1 harbors a PDZ (PSD-95/Disc Large/Zona Occludens)-binding motif at the end of its carboxyl-terminal tail. The interactions of PDZ proteins with GPCRs are crucial for the regulation of receptor function. In the present study, we characterize the interaction of all members of the membrane-associated guanylate kinase with inverted orientation PDZ (MAGI) proteins with CRFR1. We show using co-immunoprecipitation that CRFR1 interacts with MAGI-1 and MAGI-3 in human embryonic kidney (HEK293) cells in a PDZ motif-dependent manner. We find that overexpression as well as knockdown of MAGI proteins result in a significant reduction in CRFR1 endocytosis. This effect is dependent on an intact PDZ binding motif for MAGI-2 and MAGI-3 but not MAGI-1. We show that the alteration in expression levels of MAGI-1, MAGI-2 or MAGI-3 can interfere with β-arrestin recruitment to CRFR1. This could explain the effects observed with receptor internalization. We also find that knockdown of endogenous MAGI-1, MAGI-2 or MAGI-3 in HEK293 cells can lead to an enhancement in ERK1/2 signaling but has no effect on cAMP formation. Interestingly, we observe a compensation effect between MAGI-1 and MAGI-3. Taken together, our data suggest that the MAGI proteins, MAGI-1, MAGI-2 and MAGI-3 can regulate β-arrestin-mediated internalization of CRFR1 as well as its signaling and that there is a compensatory mechanism involved in regulating the function of the MAGI subfamily.

促肾上腺皮质激素释放因子(CRF)受体1 (CRFR1)与精神疾病相关,是治疗焦虑和抑郁的潜在靶点。与许多G蛋白偶联受体(gpcr)相似,CRFR1在其羧基末端尾部含有PDZ (PSD-95/Disc Large/Zona Occludens)结合基序。PDZ蛋白与GPCRs的相互作用对受体功能的调节至关重要。在目前的研究中,我们表征了具有倒取向PDZ (MAGI)蛋白的膜相关鸟苷酸激酶所有成员与CRFR1的相互作用。我们使用共免疫沉淀技术证明,在人胚胎肾(HEK293)细胞中,CRFR1以PDZ基序依赖的方式与MAGI-1和MAGI-3相互作用。我们发现MAGI蛋白的过表达和敲低导致CRFR1内吞作用的显著减少。这种效应依赖于MAGI-2和MAGI-3的完整PDZ结合基序,而不是MAGI-1。我们发现MAGI-1、MAGI-2或MAGI-3表达水平的改变可以干扰β-阻滞蛋白向CRFR1的募集。这可以解释受体内化的影响。我们还发现,HEK293细胞中内源性MAGI-1、MAGI-2或MAGI-3的敲低可导致ERK1/2信号的增强,但对cAMP的形成没有影响。有趣的是,我们观察到MAGI-1和MAGI-3之间存在补偿效应。综上所述,我们的数据表明,MAGI蛋白,MAGI-1, MAGI-2和MAGI-3可以调节β-阻滞蛋白介导的CRFR1内化及其信号传导,并且存在调节MAGI亚家族功能的补偿机制。
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引用次数: 8
PPIP5K1 Suppresses Etoposide-triggered Apoptosis. PPIP5K1抑制依托泊苷引发的细胞凋亡。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-11-23 DOI: 10.5334/1750-2187-11-4
Gayane Machkalyan, Terence E Hèbert, Gregory J Miller

Inositol hexakisphosphate kinase 2 (IP6K2) potentiates pro-apoptotic signalling and increases the sensitivity of mammalian cells to cytotoxic agents. Diphosphoinositol pentakisphosphate kinase (PPIP5K) generates inositol pyrophosphates (InsPPs) that are structurally distinct from those produced by IP6K2 and their possible roles in affecting cell viability remain unclear. In the present study, we tested the impact of PPIP5K1 on cellular sensitivity to various genotoxic agents to determine if PPIP5K1 and IP6K2 contribute similarly to apoptosis. We observed that PPIP5K1 overexpression decreased sensitivity of cells toward several cytotoxic agents, including etoposide, cisplatin, and sulindac. We further tested the impact of PPIP5K1 overexpression on an array of apoptosis markers and observed that PPIP5K1 decreased p53 phosphorylation on key residues, including Ser-15, -46, and -392. Overexpression of a kinase-impaired PPIP5K1 mutant failed to protect cells from apoptosis, indicating this protection is a consequence PPIP5K1 catalytic activity, in contrast with the sensitivity conferred by IP6K2, which is dependent on both catalytic and non-catalytic functions. These observations reveal distinct roles for PPIP5K1 and IP6K2 and the InsPPs they produce in controlling cell death.

肌醇己基磷酸激酶2 (IP6K2)增强促凋亡信号传导并增加哺乳动物细胞对细胞毒性药物的敏感性。二磷酸肌醇五磷酸激酶(PPIP5K)产生的肌醇焦磷酸(InsPPs)在结构上与IP6K2产生的肌醇焦磷酸不同,它们在影响细胞活力方面的可能作用尚不清楚。在本研究中,我们测试了PPIP5K1对细胞对各种遗传毒性药物敏感性的影响,以确定PPIP5K1和IP6K2是否对细胞凋亡有相似的贡献。我们观察到PPIP5K1过表达降低了细胞对几种细胞毒性药物的敏感性,包括依托泊苷、顺铂和舒林酸。我们进一步测试了PPIP5K1过表达对一系列凋亡标志物的影响,并观察到PPIP5K1降低了p53关键残基Ser-15、-46和-392的磷酸化。激酶受损的PPIP5K1突变体的过表达不能保护细胞免于凋亡,这表明这种保护是PPIP5K1催化活性的结果,与IP6K2赋予的敏感性相反,IP6K2依赖于催化和非催化功能。这些观察结果揭示了PPIP5K1和IP6K2及其产生的inspp在控制细胞死亡中的不同作用。
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引用次数: 4
A Gα12-specific Binding Domain in AKAP-Lbc and p114RhoGEF. AKAP-Lbc和p114RhoGEF中g α12特异性结合域。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-09-09 DOI: 10.5334/1750-2187-11-3
Joseph W Martin, Kyle S Cavagnini, Douglas N Brawley, Carrie Y Berkley, William C Smolski, Ricardo D Garcia, Autumn L Towne, Jonathan R Sims, Thomas E Meigs

AKAP-Lbc is a Rho-activating guanine nucleotide exchange factor (RhoGEF) important in heart development and pro-fibrotic signaling in cardiomyocytes. Heterotrimeric G proteins of the G12/13 subfamily, comprising Gα12 and Gα13, are well characterized as stimulating a specialized group of RhoGEFs through interaction with their RGS-homology (RH) domain. Despite lacking an RH domain, AKAP-Lbc is bound by Gα12 through an unknown mechanism to activate Rho signaling. We identified a Gα12-binding region near the C-terminus of AKAP-Lbc, closely homologous to a region of p114RhoGEF that we also discovered to interact with Gα12. This binding mechanism is distinct from the well-studied interface between RH-RhoGEFs and G12/13 α subunits, as demonstrated by Gα12 mutants selectively impaired in binding either this AKAP-Lbc/p114RhoGEF region or RH-RhoGEFs. AKAP-Lbc and p114RhoGEF showed high specificity for binding Gα12 in comparison to Gα13, and experiments using chimeric G12/13 α subunits mapped determinants of this selectivity to the N-terminal region of Gα12. In cultured cells expressing constitutively GDP-bound Gα12 or Gα13, the Gα12 construct was more potent in exerting a dominant-negative effect on serum-mediated signaling to p114RhoGEF, demonstrating coupling of these signaling proteins in a cellular pathway. In addition, charge-reversal of conserved residues in AKAP-Lbc and p114RhoGEF disrupted Gα12 binding for both proteins, suggesting they harbor a common structural mechanism for interaction with this α subunit. Our results provide the first evidence of p114RhoGEF as a Gα12 signaling effector, and define a novel region conserved between AKAP-Lbc and p114RhoGEF that allows Gα12 signaling input to these non-RH RhoGEFs.

AKAP-Lbc是一种RhoGEF活化鸟嘌呤核苷酸交换因子(RhoGEF),在心脏发育和心肌细胞促纤维化信号传导中起重要作用。G12/13亚家族的异三聚体G蛋白,包括Gα12和Gα13,可以通过与RGS-homology (RH)结构域的相互作用来刺激一组特殊的rhogef。尽管缺乏RH结构域,AKAP-Lbc通过未知机制与g - α12结合,激活Rho信号。我们在AKAP-Lbc的c端附近发现了一个Gα12结合区,与我们发现的与Gα12相互作用的p114RhoGEF区域非常相似。这种结合机制不同于已被广泛研究的rh - rhogef与G12/13 α亚基之间的界面,正如Gα12突变体选择性地破坏AKAP-Lbc/p114RhoGEF区域或rh - rhogef的结合所证明的那样。与Gα13相比,AKAP-Lbc和p114RhoGEF对Gα12的结合表现出较高的特异性,利用嵌合的G12/13 α亚基将这种选择性的决定因素定位到Gα12的n端区域。在表达组成型gdp结合的Gα12或Gα13的培养细胞中,Gα12结构更有效地对血清介导的p114RhoGEF信号传导产生显性负作用,表明这些信号蛋白在细胞通路中偶联。此外,AKAP-Lbc和p114RhoGEF中保守残基的电荷反转破坏了g - α12与这两种蛋白的结合,表明它们具有与α亚基相互作用的共同结构机制。我们的研究结果提供了p114RhoGEF作为Gα12信号效应物的第一个证据,并在AKAP-Lbc和p114RhoGEF之间定义了一个新的保守区域,该区域允许Gα12信号输入这些非rh rhogef。
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引用次数: 10
期刊
Journal of Molecular Signaling
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