Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_21
Ke Huang, Shubo Yang, Zhaojian Luo, Ke Yang, Menghan Chen, Guopeng Wei, Jian Huang
{"title":"A Fast Genome Sequence Aligner Based on Minimal Perfect Hash Algorithm Realized with FPGA Based Heterogeneous Computing Platform","authors":"Ke Huang, Shubo Yang, Zhaojian Luo, Ke Yang, Menghan Chen, Guopeng Wei, Jian Huang","doi":"10.1007/978-3-319-94968-0_21","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_21","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125952553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_14
L. Deng, Z. Dong, Hui Liu
{"title":"XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting","authors":"L. Deng, Z. Dong, Hui Liu","doi":"10.1007/978-3-319-94968-0_14","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_14","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"192 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134523708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_23
Fang Jing, Shaowu Zhang, Zhen Cao, Shi-Hua Zhang
{"title":"Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning","authors":"Fang Jing, Shaowu Zhang, Zhen Cao, Shi-Hua Zhang","doi":"10.1007/978-3-319-94968-0_23","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_23","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123943225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_15
A. Churkin, D. Barash
{"title":"A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations","authors":"A. Churkin, D. Barash","doi":"10.1007/978-3-319-94968-0_15","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_15","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129004033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_18
Daniel W. Schultz, Bojian Xu
{"title":"On k-Mismatch Shortest Unique Substring Queries Using GPU","authors":"Daniel W. Schultz, Bojian Xu","doi":"10.1007/978-3-319-94968-0_18","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_18","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123064893","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_1
Suyun Huang, Xingming Zhao
{"title":"Prediction of Drug Response with a Topology Based Dual-Layer Network Model","authors":"Suyun Huang, Xingming Zhao","doi":"10.1007/978-3-319-94968-0_1","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_1","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"212 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117291657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_25
Liyuan Liu, Meng Han, Yiyun Zhou, Yan Wang
{"title":"LSTM Recurrent Neural Networks for Influenza Trends Prediction","authors":"Liyuan Liu, Meng Han, Yiyun Zhou, Yan Wang","doi":"10.1007/978-3-319-94968-0_25","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_25","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"28 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126099446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_17
Satya Anindita, A. Marnolia, Hersal Hermana Putra, M. Haikal, U. S. Tambunan
{"title":"Novel Inhibitors of T315I Mutant BCR-ABL1 Tyrosine Kinase for Chronic Myeloid Leukemia Disease Through Fragment-Based Drug Design","authors":"Satya Anindita, A. Marnolia, Hersal Hermana Putra, M. Haikal, U. S. Tambunan","doi":"10.1007/978-3-319-94968-0_17","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_17","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"51 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117347402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_11
Shuhui Liu, Xuequn Shang
{"title":"Hierarchical Similarity Network Fusion for Discovering Cancer Subtypes","authors":"Shuhui Liu, Xuequn Shang","doi":"10.1007/978-3-319-94968-0_11","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_11","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127430519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-08DOI: 10.1007/978-3-319-94968-0_9
Kai Shi, Lin Gao, Bingbo Wang
{"title":"Inferring Dysregulated Pathways of Driving Cancer Subtypes Through Multi-omics Integration","authors":"Kai Shi, Lin Gao, Bingbo Wang","doi":"10.1007/978-3-319-94968-0_9","DOIUrl":"https://doi.org/10.1007/978-3-319-94968-0_9","url":null,"abstract":"","PeriodicalId":354035,"journal":{"name":"International Symposium on Bioinformatics Research and Applications","volume":"111 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124058470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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