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Geometric Morphometrics Analysis of Inter-Population Wing Shape Variations in Bats 蝙蝠种群间翅膀形状变化的几何形态计量学分析
Pub Date : 2022-06-29 DOI: 10.56512/as.2022.1.e220629
Zaira Ahmad, S. Ahmad, M. Abbasi, N. Sheikh
Background: The cryptic diversity of bat fauna in Pakistan demands to incorporate an efficient and reliable approach for morphological species identification. The traditional taxonomic approaches are effective in exploring variations of characters but have proved to be less efficient in quantifying the interspecific and intraspecific differences. Geometric morphometric method has recently act as an efficient tool to analyze the overall changes in shape and size of biological features. The present study is therefore conducted to exploit the use of geometric morphometric methods along with traditional morphological measurements to examine the size and shape differences among four geographically isolated population groups of insectivorous bat species (Pipistrellus coromandra). Methods: Specimens were collected from different locations of Punjab, Pakistan. Twelve well-defined landmarks to quantify the variation in right wing of bats were analyzed using geometric morphometric tools and wing measurements of 5 selected parameters were also taken using traditional morphological measurements. Results: The results of external measurements for wing overlapped for most part among the different studied population groups. Fur colour photographs displayed in the inter-population had shown visible change from dark brown to light brown giving an indication of more morphological differences. Regarding the geometric morphometric results, wing-shape differences were found to dominate in inter-population as compared to intra-population for bats species (Pipistrellus coromandra) which clearly reflects the effects of habitat factors on different populations phenotypically. The wireframe for the first two PCs indicated an overall shape change trend with the displacement of landmark points representing the expansion along the upper wing margins in PC1 compared to PC2. Conclusion: The current study has successfully explored the power of geometric morphometric in reflecting the variations in wing shape among different populations of bats species (Pipistrellus coromandra).
背景:巴基斯坦蝙蝠区系的隐蔽性要求结合一种有效和可靠的形态学物种鉴定方法。传统的分类方法在探索性状变异方面是有效的,但在量化种间和种内差异方面效率较低。几何形态测量法近年来已成为分析生物特征形状和大小整体变化的有效工具。因此,本研究利用几何形态计量学方法和传统形态学测量方法,研究了四个地理隔离的食虫蝙蝠种群(Pipistrellus coromandra)的大小和形状差异。方法:在巴基斯坦旁遮普省不同地点采集标本。采用几何形态测量工具分析了12个明确的标志,并采用传统形态学测量方法测量了5个选定参数的翅膀尺寸。结果:在不同的研究人群中,翅膀的外部测量结果大部分重叠。在种群间展示的皮毛颜色照片显示出从深棕色到浅棕色的明显变化,这表明更多的形态差异。几何形态测量结果表明,不同种群(Pipistrellus coromandra)的翅形差异在种群间比种群内占主导地位,这清楚地反映了生境因子对不同种群表型的影响。前两个pc的线框图显示出整体形状变化的趋势,PC1中与PC2相比,标志点的位移代表了沿上翼边缘的扩张。结论:本研究成功地探索了几何形态计量学在反映不同种群蝙蝠(Pipistrellus coromandra)翅膀形状变化中的作用。
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引用次数: 0
A Synonymous Variant, GABRG2 rs211037 might be a Predictive Genetic Marker of Migraine: A Case Control Study from Pakistan 一个同属变异,GABRG2 rs211037可能是偏头痛的预测性遗传标记:来自巴基斯坦的病例对照研究
Pub Date : 2022-06-28 DOI: 10.56512/as.2022.1.e220628
T. Saleem, H. Maqbool, S. Suqaina, Mavra Irfan, Raana Zafar, N. Sheikh
Background: Migraine is a severe neurovascular disease with some temporary symptoms like unilateral headache attacks associated with sensory and autonomic disturbances. It affects 12% of the general population worldwide. Females are more susceptible to migraine than males. The genetic and environmental factors contribute as a causative agent to its symptomatology. Gamma-aminobutyric acid (GABA) neurotransmitter plays a potential role in migraine pathophysiology that prompted us to evaluate the association between gamma-aminobutyric acid type a receptor gamma two subunit gene (GABRG2) polymorphisms and the risk of a migraine attack.Methods The present case-control study included 220 subjects (100 control; 120 patients). Blood samples were taken from all the participants and DNA was isolated. The selected SNPs (rs211037, rs121909672, and T813C) of exons 5, 7, and 8 of the GABRG2 gene were genotyped for cases and controls.Results: A silent polymorphism was found at the rs211037 polymorphic site, while no variation was found on other targeted sites either in the case or control population.  Statistical analysis indicated significant differences in genotypic (p=<0.05) and allelic frequencies (p = <0.001; OR 2.039; 95% CI 1.346-3.089) and for dominant model (p = <0.001; OR 2.836; 95% CI 1.618-4.970).Conclusion: The result of our study showed that rs211037 polymorphism of the GABRG2 gene was significantly associated with migraines in the Pakistani population.
背景:偏头痛是一种严重的神经血管疾病,伴有一些暂时性症状,如伴有感觉和自主神经紊乱的单侧头痛发作。它影响了全世界12%的人口。女性比男性更容易患偏头痛。遗传和环境因素对其症状有一定的致病作用。γ -氨基丁酸(GABA)神经递质在偏头痛病理生理中起着潜在的作用,这促使我们评估γ -氨基丁酸a型受体γ 2亚基基因(GABRG2)多态性与偏头痛发作风险之间的关系。方法本病例-对照研究纳入220例(对照组100例;120名患者)。所有参与者的血液样本被采集,DNA被分离。选择GABRG2基因外显子5、7、8的snp (rs211037、rs121909672和T813C)对病例和对照组进行基因分型。结果:在rs211037多态性位点发现了沉默多态性,而在病例和对照人群中,其他目标位点均未发现变异。统计学分析表明,基因型(p=<0.05)和等位基因频率(p=< 0.001)差异有统计学意义;或2.039;95% CI 1.346-3.089)和优势模型(p = <0.001;或2.836;95% ci 1.618-4.970)。结论:本研究结果显示,巴基斯坦人群中GABRG2基因rs211037多态性与偏头痛有显著相关性。
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引用次数: 0
Efficacy of SDS For Protein Extraction from Broiler Muscles and Mammalian Liver Tissue SDS对肉仔鸡肌肉和哺乳动物肝组织蛋白质提取的效果
Pub Date : 2022-06-24 DOI: 10.56512/as.2022.1.e220624
Syeda Qandiel Zahra, Sidra Latif, H. Nazir, Zunaira Izhar Shah, Azka Zafar, A. Majid, Adil Farooq, A. Qureshi
Background: The present study purports to check and validate the potential of sodium dodecyl sulfate (SDS) alone being a suitable and cost-effective lysis buffer for maximum and efficient protein extraction from various muscle tissues of broiler chicken and mammalian liver.Materials and Methods: Three different muscle tissues (I; chest, II; wing and III; leg) were extracted from randomly selected commercial broilers (n=4) while mice (n=3) were dissected for the extraction of liver tissue samples. 1:1 ratio (w/v) of SDS; 10 and 1.0 & 1.5% was used for muscles and liver tissues, respectively for its best time optimization for protein extraction. After incubation, respective tissues were homogenized followed by centrifugation. The supernatant was then processed for crude protein (CP) extraction by Bromocresol Green (BCG) method.Results: SDS (10%) achieved a maximum yield of CP after 1 hour of incubation. When checked the co-dependence of SDS-reagent on muscle-tissue type and time of incubation, tissue I (chest) was found to give maximum CP contents after 1 hour of incubation, tissue II (wing) extracted more CP after 3 hours while tissue III (leg) rendered equal amounts of CP after 1, 2 and 3 hours of incubation, respectively. From the mammalian liver tissue maximum yield of CP (6.9 g/dl), and albumin (ALB) (1.6 g/dl) was obtained with 1.5% of SDS. While the CP and albumin (Alb) content was not detected after homogenization with 1.0% SDS. Significance was checked at (P< 0.05).Conclusion: It is concluded from the above findings that 10% SDS is the best lysis buffer concentration to extract crude protein from all the studied broiler muscle tissues while from mice liver samples we found 1.5% SDS lysis reagent seems good than 1.0%. Furthermore, this simple and cheapest procedure and ease of preparation this reagent may be suitable for extraction of important tissue protein fractions.
背景:本研究旨在验证十二烷基硫酸钠(SDS)作为一种合适且经济高效的裂解缓冲液的潜力,以最大限度地从肉鸡和哺乳动物肝脏的各种肌肉组织中提取蛋白质。材料与方法:三种不同的肌肉组织(I;胸部,二世;翼和III;随机选取商品肉鸡(n=4),提取腿部组织,解剖小鼠(n=3),提取肝脏组织样本。SDS的比例为1:1 (w/v);肌肉组织和肝脏组织的最佳提取时间分别为10%和1.0 & 1.5%。孵育后,各组织匀浆,离心。用溴甲酚绿(BCG)法提取粗蛋白(CP)。结果:SDS(10%)孵育1小时后CP产率最高。检测sds试剂对肌肉组织类型和孵育时间的共依赖性,发现组织I(胸部)在孵育1小时后CP含量最高,组织II(翅膀)在孵育3小时后CP含量较多,组织III(腿部)在孵育1、2和3小时后CP含量相等。从哺乳动物肝组织中,以1.5%的SDS得到CP (6.9 g/dl)和ALB (1.6 g/dl)的最大产量。1.0% SDS均质后未检测CP和白蛋白(Alb)含量。差异有统计学意义(P< 0.05)。结论:在肉鸡肌肉组织中,10%的SDS是提取粗蛋白质的最佳缓冲液浓度,而在小鼠肝脏样品中,1.5%的SDS比1.0%的SDS更好。此外,这种简单和最便宜的程序和易于制备的试剂可能适用于提取重要的组织蛋白组分。
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引用次数: 0
Metal Dust Exposure Caused Changes in Blood Indices and Serum Proteins 金属粉尘暴露引起血液指标和血清蛋白的变化
Pub Date : 2022-05-30 DOI: 10.56512/as.2022.1.e220530
R. Mehmood, N. Sheikh
Background: Amongst the industrial hubs in Pakistan, Wazirabad is renowned for its cutlery industry. Cutlery industry generates heaps of multi-metallic dust in whetting units during the processing of stain fewer steel tools. This dust comprises certain potentially toxic and even carcinogenic constituents, thus pose a serious health threat to the workers involved in its processing. Laborers health and safety is something quite non-seriously considered in most of the developing countries, no different is Pakistan. Present exploration was aimed at searching for the differences, in blood profile and quantitative serum protein profile of a group of laborers in cutlery industry that are directly and regularly exposed to multi-metallic dust. Materials and Methods: After taking written consent from the participants, blood samples were drawn for hematological analysis and serum analysis. Hematological analysis was performed with hematological analyzer and serum was subjected to SDS gel electrophoresis for protein profiling. Results: Statistically significant changes were observed in the number of RBCs, MCV, HCT and RDW, whereas platelet count was decreased in experimental groups when compared to control group. Serum protein profiling using SDS-PAGE revealed the protein fractions ranging from 73 to 287 kDa. Densitometric analysis has shown changes in the serum proteins of the subjects exposed to metal dust. Conclusion: Chronic exposure to the metal dust induce changes in the hematological parameters as well as serum proteins. The industrial workers should ensure the use of industry specific personal safety equipment. Key words: Health hazard, Hematology, Metals, Metal dust, Proteins, SDS-PAGE.
背景:在巴基斯坦的工业中心中,瓦济拉巴德以其餐具工业而闻名。在刀具加工过程中,刀具加工车间会产生大量的多金属粉尘。这种粉尘含有某些潜在的有毒甚至致癌成分,因此对参与其加工的工人构成严重的健康威胁。劳工的健康和安全在大多数发展中国家都是不被重视的,巴基斯坦也不例外。本研究旨在探讨直接和经常接触多金属粉尘的餐具工业工人的血谱和定量血清蛋白谱的差异。材料与方法:经受试者书面同意后,抽取血样进行血液学分析和血清分析。用血液分析仪进行血液学分析,用SDS凝胶电泳进行蛋白分析。结果:实验组红细胞、MCV、HCT、RDW计数均较对照组变化有统计学意义,血小板计数较对照组减少。血清蛋白SDS-PAGE分析显示蛋白含量范围为73 - 287 kDa。密度分析显示暴露于金属粉尘的受试者血清蛋白发生了变化。结论:长期接触金属粉尘可引起血液学指标及血清蛋白的改变。产业工人应确保使用行业专用的个人安全设备。关键词:健康危害,血液学,金属,金属粉尘,蛋白质,SDS-PAGE
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引用次数: 0
Second Wave Scenario of COVID-19 in Pakistan and Combating Strategies 2019冠状病毒病在巴基斯坦的第二波情景和应对战略
Pub Date : 2022-04-30 DOI: 10.56512/as.2022.1.e220430
M. B. Khawar, M. Abbasi, N. Sheikh, M. Riaz, Mussarat Rafiq, A. Farooq, Z. Ahmad, Sana Fatima, Hafiza Nabeela Amaan
Dear Editor,According to WHO, there have been 209,876,613 confirmed cases of COVID-19, and 4,400,284 total deaths to date (https://www.who.int/emergencies/diseases/novel-coronavirus-2019, retrieved on 22nd August 2021, 17:09 PST). Pakistan documented the first confirmed case of COVID-19 on February 26, 2020 (Waris et al. 2020). There were 1,123,812 confirmed cases and 24,923 deaths reported with Sindh being the most affected province with 419,810 confirmed cases followed by Punjab with 379, 574 confirmed cases (http://covid.gov.pk/ retrieved on 22nd August 2021, 17:09 PST). Effective strategy and strict steps taken by the Government of Pakistan have confined the active cases to 89,334 only (http://covid.gov.pk/, retrieved on 22nd August 2021, 17:09 PST). Federal and Provincial Governments of Pakistan took various measures to control its spread well in advance. These measures include a strict screening of travelers, the installation of scanners at exchange routes (airport and land routes), closure of every single educational institute all over Pakistan, and awareness campaigns via public and private media and social platforms (Waris et al., 2020).Pakistan had reported the second-highest cases in the last seven days (4th-10th August 2021) in the Eastern Mediterranean region with 24127 cumulative deaths, which is alarming (https://covid19.who.int/table). Experts have already warned that the second wave of COVID-19 will strike more badly than the first one. They urged on the continuity of lockdown until the number of cases starts to decrease as developed countries did. WHO has also expressed its concerns that if Pakistan does not take strict measures, then it may become the next epicenter of this pandemic after Europe.In the present letter, we provide a short-term toll of reported cases, deaths, and recoveries of COVID-19 to forecast the situation in upcoming months under the prevailing circumstances of easing lockdown. The daily-updated data of the COVID-19 epidemic across all provinces of Pakistan have been extracted at (8:25 am PST) between 17th October 2020 to 15th December 2020 from the official website (http://covid.gov.pk/) developed to provide the exact statistics of the COVID-19 pandemic.We generated a bimonthly cumulative record of COVID-19 from 17th October 2020 to 15th December 2020. Regarding 17th October, 32062 tests were performed out of which 567 cases were reported positive with a mortality rate of 2.12%. From 17th October to 15th November, out of 908,599 total tests performed 36,580 cases were reported positive with 522 deaths. By the mid of November, testing capacity was increased to find out more affected patients and to reduce the transmission rate. On 16th November out of 29378 tests performed on that day, there were 2140 positive cases, 33 deaths, and 1010 recoveries. From 16th November to 15th December, 1,185238 tests were performed, 86,945 cases were positive with 1,850 total deaths, and 64,774 recoveries. Pakistan has w
根据世卫组织的数据,迄今已有209,876,613例COVID-19确诊病例,死亡总数为4,400,284例(https://www.who.int/emergencies/diseases/novel-coronavirus-2019,于2021年8月22日太平洋标准时间17:09检索)。巴基斯坦于2020年2月26日记录了第一例COVID-19确诊病例(Waris et al. 2020)。报告了1,123,812例确诊病例和24,923例死亡,其中信德省是受影响最严重的省份,确诊病例为419,810例,其次是旁遮普省,确诊病例为379,574例(http://covid.gov.pk/于2021年8月22日太平洋标准时间17:09获取)。巴基斯坦政府采取的有效战略和严格措施已将活跃病例限制在89,334例(http://covid.gov.pk/,于2021年8月22日太平洋标准时间17:09检索到)。巴基斯坦联邦政府和省政府采取了各种措施,提前很好地控制了疫情的蔓延。这些措施包括严格筛选旅行者,在交换路线(机场和陆路)安装扫描仪,关闭巴基斯坦各地的每一所教育机构,以及通过公共和私人媒体和社交平台开展宣传活动(Waris et al., 2020)。巴基斯坦在过去七天(2021年8月4日至10日)报告了东地中海区域第二高的病例,累计死亡24127人,令人震惊(https://covid19.who.int/table)。专家们已经警告说,第二波COVID-19的打击将比第一次更严重。他们敦促像发达国家一样,继续封锁,直到病例数开始减少。世卫组织还表示担心,如果巴基斯坦不采取严格措施,那么它可能成为继欧洲之后的下一个大流行中心。在这封信中,我们提供了COVID-19报告病例、死亡和康复的短期人数,以预测在当前放松封锁的情况下未来几个月的情况。2020年10月17日至2020年12月15日(太平洋标准时间上午8:25),从官方网站(http://covid.gov.pk/)提取了巴基斯坦所有省份2019冠状病毒病流行的每日更新数据,该网站旨在提供2019冠状病毒病大流行的确切统计数据。我们生成了2020年10月17日至2020年12月15日的COVID-19双月累积记录。10月17日,进行了32062次检测,其中567例报告呈阳性,死亡率为2.12%。从10月17日至11月15日,在总共进行的908,599次检测中,报告有36 580例呈阳性,其中522例死亡。到11月中旬,提高了检测能力,以发现更多受影响的患者并降低传播率。11月16日,在当天进行的29378次检测中,有2140例阳性病例,33例死亡,1010例康复。从11月16日至12月15日,进行了185238次检测,86 945例呈阳性,总死亡人数为1 850人,康复人数为64 774人。11月18日,在第二波SARS-CoV-2中,巴基斯坦的COVID-19死亡人数最多,一天内死亡295人,死亡率为2.25%。目前的研究强调了该国第二波感染期间COVID-19的统计数据。10月中旬至12月中旬之后,巴基斯坦各地的COVID-19感染率和死亡人数逐渐上升。在这两个月里,新冠肺炎活跃病例从2020年10月17日的9296例增加到2020年12月15日的48369例,显著增加了420%。另一方面,从2020年10月16日至2020年11月15日报告的阳性病例总数为36 580例,从2020年11月16日至2020年12月15日,这一数字增加到86941例,因此,两个月内记录的阳性病例总数增加了138%,而死亡人数增加了254%。新冠病毒阳性率从第1个月的3.99%上升到第2个月的5.02% (http://covid.gov.pk/stats/pakistan)。事实证明,在第二次新冠肺炎疫情中,立即实施智能封锁和关闭教育机构,是有效的预防策略。因此,活跃病例和死亡总人数的增加令人震惊。同样,检测阳性率的上升是巴基斯坦严重关切的问题,因为这是感染率上升的直接指标。由于缺乏足够的个人防护装备,COVID-19活跃病例给医院带来的负担对医护人员的生命构成严重威胁(Armaan et al., 2020)。除此之外,患有其他疾病的患者,特别是癫痫等慢性疾病的患者也受到影响,因为他们被剥夺了基本的卫生设施(Saleem等人,2020年)。
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引用次数: 2
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Albus Scientia
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