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Catch composition and species diversity during dredging operations of Mediterranean coastal lagoon, Lake Manzala, Egypt 埃及曼扎拉湖地中海沿岸泻湖疏浚作业期间的渔获物组成和物种多样性
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.07.002
Kariman Shalloof , Azza El-Ganiny , Alaa El-Far, Mohamed Fetouh , Walid Aly , Amal Amin

Lake Manzala, the largest Egyptian coastal lake, is one of the most valuable fish sources in Egypt, which contributes about 14% to the total annual Egyptian fisheries production. However, given that Lake Manzala suffers from major environmental and fisheries problems, an ambitious national project for the dredging, purification, and development of this lake was established in 2017. Hence, this study was conducted to assess seasonal diversity and to provide an inventory of fish species at Lake Manzala during dredging operations. Five seasonal surveys were conducted during the period from 2019 to 2021. By using different fishing gears and methods operating in the lake, a total of 7774 fish and crustaceans—belonging to 29 fish species and three crustacean species that clump into 21 families—were collected from Lake Manzala. During the study period, the family Cichlidae showed the highest occurrence of about 70%. The marine-brackish species recorded the highest aquatic environment (milieu) diversity with 34.4% of the collected species, but only 12.5% of the freshwater species. Six of the collected fish species were recorded of Indo-pacific origin, as Lissepsian migrant species. In this study, the diversity index (H) was calculated, ranging between 1.13 and 1.77. As indicated by the seasonal variation of the diversity index, the highest diversity index of Lake Manzala was evident in autumn 2019 and spring 2021 at 1.700 and 1.365, respectively. The governmental dredging and cleaning operations in the lake have a relative impact on the species composition in this area. Further studies are recommended after the completion of these operations to confirm the impact of dredging on species composition alteration.

曼扎拉湖是埃及最大的沿海湖泊,是埃及最有价值的鱼类来源之一,约占埃及年渔业总产量的14%。然而,鉴于曼扎拉湖面临着严重的环境和渔业问题,2017年建立了一个雄心勃勃的国家项目,对该湖进行疏浚、净化和开发。因此,进行这项研究是为了评估季节多样性,并在疏浚作业期间提供曼扎拉湖鱼类物种清单。2019年至2021年期间进行了五次季节性调查。通过使用不同的渔具和在湖中作业的方法,从曼扎拉湖共采集到7774种鱼类和甲壳类动物,分属29种鱼类和3种甲壳类目,共21科。在研究期间,慈鲷科的发生率最高,约为70%。海洋微咸水物种的水生环境(环境)多样性最高,占采集物种的34.4%,但仅占淡水物种的12.5%。收集到的六种鱼类被记录为起源于印度-太平洋的Lissepsian迁徙物种。在这项研究中,计算了多样性指数(H),范围在1.13和1.77之间。多样性指数的季节变化表明,2019年秋季和2021年春季,曼扎拉湖的多样性指数最高,分别为1.700和1.365。政府在湖中的疏浚和清理作业对该地区的物种组成有相对的影响。建议在这些作业完成后进行进一步研究,以确认疏浚对物种组成变化的影响。
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引用次数: 0
Water quality index and physicochemical parameters effect on the corrosion rate of steel along the Egyptian Mediterranean Sea 埃及地中海沿岸水质指标和理化参数对钢铁腐蚀速率的影响
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.05.002
Manal G. Mahmoud, Abeer A.M. El-Sayed, Madelyn N. Moawad, E.R. Sallam, Laila A. Mohamed, Hermine R.Z. Tadros

This study aims to discuss some physicochemical parameters and their effect on steel corrosion rate in natural seawater collected from different sectors along the Egyptian coast of the Mediterranean Sea. Samples were collected from eight eastern sectors including 48 stations during autumn of 2021, and from twelve western sectors including 72 stations during spring of 2022. The steel corrosion rate was determined by using the weight loss technique on a laboratory scale. Results ranges and total averages revealed that salinity (20.630–42.020) 38.540‰ in 2021 and (37.771–39.304) 38.831‰ in 2022; the pH (8.28–8.41) in 2021 and (7.69–8.15) in 2022; dissolved oxygen (3.00–4.73) 3.65 mg/L in 2021 and (2.88–6.98) 4.481 mg/L in 2022; oxidizable organic matter (1.10–2.60) 2.08 mg/L in 2021 and (depletion–0.93) 0.304 mg/L in 2022; phosphate (0.022–10.876) 4.142 µM in 2021 and (depletion–5.432) 0.612 µM in 2022; nitrite (depletion–1.325) 0.379 µM in 2021 and (depletion–2.50) 0.211 µM in 2022; sulphate (2.044–3.876) 2.997 g/L in 2021 and (1.544–4.425) 2.645 g/L in 2022; and the steel corrosion rate (0.020–0.158) 0.088 mm/y in 2021 and (0.006–0.197) 0.078 mm/y in 2022. According to the Principal Component Analysis (PCA) data, the western stations had good water quality, while the eastern stations were polluted in different degrees related to the increase in human activities. Two statistical equations were obtained from the correlation between the steel corrosion rate and their corresponding physicochemical parameters.

本研究旨在讨论从埃及地中海沿岸不同地区采集的天然海水中的一些物理化学参数及其对钢腐蚀速率的影响。2021年秋季,从东部8个地区(包括48个站点)采集了样本,2022年春季,从西部12个地区(72个站点)收集了样本。采用失重法在实验室规模上测定了钢的腐蚀速率。结果范围和总平均值显示,2021年盐度(20.630–42.020)38.540‰,2022年盐度(37.771–39.304)38.831‰;2021年的pH值为(8.28–8.41),2022年为(7.69–8.15);2021年溶解氧(3.00–4.73)为3.65 mg/L,2022年为(2.88–6.98)为4.481 mg/L;2021年可氧化有机物(1.10–2.60)2.08 mg/L,2022年(贫化–0.93)0.304 mg/L;2021年磷酸盐(0.022–10.876)4.142µM,2022年(贫化–5.432)0.612µM;亚硝酸盐(贫化-1.325)在2021年为0.379µM,(贫化-2.50)在2022年为0.211µM;2021年硫酸盐(2.044–3.876)2.997 g/L,2022年硫酸盐(1.544–4.425)2.645 g/L;2021年钢材腐蚀率为(0.020–0.158)0.088 mm/y,2022年为(0.006–0.197)0.078 mm/y。根据主成分分析(PCA)数据,西部站点水质良好,而东部站点受到不同程度的污染,这与人类活动的增加有关。根据钢的腐蚀速率与其相应的物理化学参数之间的相关性,得到了两个统计方程。
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引用次数: 0
Toxic effects of chromium chloride on hematology and histopathology of major carp (Labeo rohita) 氯化铬对大鲤鱼血液学和组织病理学的毒性作用
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.01.003
Amna Chaudhary , Komal gul Javaid , Erum Bughio

Heavy metal contamination caused by human activities is a major threat to aquatic organisms. Therefore, a 28-day trial was designed to evaluate the hematological and histological changes in Labeo rohita exposed to chromium chloride. For this purpose, 240 fish (Labeo rohita) were randomly selected and divided into four groups. Three groups were treated with a sublethal waterborne concentration of chromium (37, 22, and 11 mgL−1); the fourth group was chromium-free control (0 mgL−1). Results demonstrated that noted values of hematological parameters, such as mean cell hemoglobin, red blood cells, hematocrit, platelets, and hemoglobin, were decreased significantly (P < 0.05) in experimental groups compared with control, while mean cell volume and white blood cells were increased. On the 28th day, a decline was observed in white blood cell values. The severity of histological lesions in the liver, kidney, and gills increased as the concentration and duration of chromium exposure increased. No histological change was observed in the control (T0), while T1 showed more severe changes than T2 and T3. Those results suggest that long-term exposure to chromium chloride causes adverse effects on the hematology and histology of major carp, Labeo rohita.

人类活动造成的重金属污染是对水生生物的主要威胁。因此,设计了一项为期28天的试验来评估暴露于氯化铬的Labeo rohita的血液学和组织学变化。为此,随机选择240条鱼(Labeo rohita),并将其分为四组。三组用亚致死水性浓度的铬(37、22和11 mgL−1)处理;第四组为无铬对照组(0 mgL−1)。结果表明,与对照组相比,实验组的血液学参数(如平均细胞血红蛋白、红细胞、红细胞比容、血小板和血红蛋白)的显著值显著降低(P<;0.05),而平均细胞体积和白细胞增加。在第28天,观察到白细胞值下降。肝脏、肾脏和鳃的组织学损伤的严重程度随着铬暴露浓度和持续时间的增加而增加。对照组(T0)未观察到组织学变化,而T1表现出比T2和T3更严重的变化。这些结果表明,长期接触氯化铬会对大鲤鱼的血液学和组织学产生不良影响。
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引用次数: 0
Assessing fishery status and sustainable exploitation of spotted seabass (Dicentrarchus punctatus) in Bardawil Lagoon, Eastern Mediterranean, Egypt 评估埃及东地中海Bardawil泻湖斑点鲈鱼(Dicentrarchus punctatus)的渔业状况和可持续开发
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.06.001
Ayman S. Ahmed , Ezzat Mohammed-AbdAllah

The growth and population parameters of spotted seabass (Dicentrarchus punctatus) in Bardawil Lagoon were investigated to assess their fishery status and propose concrete recommendations for sustainable exploitation. The samples (n = 271) were collected from commercial catches during 2021. As revealed by examining the otoliths, D. punctatus has a short life span of a maximum of four years based on the mean lengths of 20.2, 25.3, 29.7, and 33.5 cm for age groups from I to IV, respectively. The total length-weight relationship equations were W = 0.0120TL2.9672 for males, W = 0.0127TL2.9486 for females and W = 0.0124TL2.9563 for the combined sexes. The von Bertalanffy growth function was Lt = 40.50(1-e-0.38(t+0.66)). The study determined the total and natural mortality rates as 1.58 and 0.79 year−1, respectively, with an exploitation rate (E) of 0.49, which was found close to the optimum value (0.5). However, based on management policies, E was greater than the value corresponding to 50% relative biomass per recruit (E0.5), which indicates that the current fishing effort is unsustainable. Therefore, to maintain the biomass of spawning stocks, the study recommends a 22.4% reduction in the current exploitation rate through the application of fishing regulations that decrease fishing efforts. Such recommendations can help ensure the sustainable exploitation of spotted seabass in Bardawil Lagoon.

调查了Bardawil泻湖斑点鲈鱼(Dicentrarchus punctatus)的生长和种群参数,以评估其渔业状况,并提出可持续开发的具体建议。样本(n=271)是从2021年的商业渔获物中采集的。根据对耳石的检查,根据I至IV年龄组的平均长度分别为20.2、25.3、29.7和33.5厘米,D.punctatus的寿命较短,最长可达4年。总长度-重量关系方程为:男性W=0.0120TL2.9672,女性W=0.0127TL2.9486,男女组合W=0.0124TL2.9563。von Bertalanffy生长函数为Lt=40.50(1-e-0.38(t+0.66))。该研究确定总死亡率和自然死亡率分别为1.58和0.79年-1,开采率(e)为0.49,接近最佳值(0.5)。然而,根据管理政策,e大于每个新兵50%相对生物量对应的值(E0.5),这表明目前的捕鱼努力是不可持续的。因此,为了保持产卵种群的生物量,该研究建议通过实施减少捕鱼努力的捕鱼法规,将当前的开采率降低22.4%。这些建议有助于确保Bardawil泻湖斑点鲈鱼的可持续开发。
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引用次数: 0
Effect of hauling and soaking time of stationary lift nets on fish aggregation using a hydroacoustic monitoring approach 利用水声监测方法研究固定式提升网的拖运和浸泡时间对鱼类聚集的影响
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.05.003
Fauziyah , Ellis Nurjuliasti Ningsih , Edo Arnando , Fatimah , Fitri Agustriani , Freddy Supriyadi

This study aimed to determine the effect of hauling and soaking time of stationary lift nets on the pattern of fish aggregation in the Banyuasin waters, South Sumatra, Indonesia using a hydroacoustic monitoring approach. The fish aggregations were monitored using the SIMRAD EK-15 single beam (200 kHz) during hauling, and the transducer was mounted on the side of the fishing gear. Furthermore, data were collected before (17:00–23:59) and after midnight (24:00–05:00) at four different soaking times (S1, S2, S3, and S4). The data obtained were then analyzed using pairwise comparisons (nonparametric tests). The pairwise test (p = 0.25 > 0.05) showed that there was no significant difference between the acoustic mean densities obtained before and after midnight (292.2 and 178.9 g/m3), but the total values for both periods varied widely (6,797 and 3,507 g/m3). Dunn’s post hoc tests (p = 0.001 < 0.05) revealed that there were significant differences in the acoustic mean densities between S1 (1–16 min) and S2 (17–32 min). Based on the results, the optimum soaking time was 17–32 min, which was recommended for improving the effectiveness of the stationary lift nets. Furthermore, fish aggregation began to spread out of the catchable area when the soaking time was over 32 min.

本研究旨在使用水声监测方法,确定固定式提升网的拖运和浸泡时间对印度尼西亚南苏门答腊Banyuasin水域鱼类聚集模式的影响。在运输过程中,使用SIMRAD EK-15单波束(200 kHz)监测鱼类聚集,并将传感器安装在渔具的侧面。此外,在四个不同的浸泡时间(S1、S2、S3和S4)之前(17:00-23:59)和午夜之后(24:00-05:00)收集数据。然后使用成对比较(非参数检验)对获得的数据进行分析。成对检验(p=0.25>0.05)表明,午夜前后获得的声学平均密度(292.2和178.9 g/m3)之间没有显著差异,但两个时段的总值变化很大(6797和3507 g/m3)。Dunn的事后测试(p=0.001<;0.05)显示,S1(1-16分钟)和S2(17-32分钟)之间的声学平均密度存在显著差异。根据研究结果,建议最佳浸泡时间为17-32分钟,以提高固定式提升网的有效性。此外,当浸泡时间超过32分钟时,鱼类聚集开始扩散到可捕获区域之外。
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引用次数: 0
The carrying capacity of estuarine mangroves in maintaining the coastal urban environmental health of Southeast Sulawesi, Indonesia 河口红树林在维护印度尼西亚苏拉威西岛东南部沿海城市环境健康方面的承载力
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.03.002
Kangkuso Analuddin , Alrum Armid , Ruslin Ruslin , Sahadev Sharma , La Ode Kadidae , La Ode Muhammad Yasir Haya , Andi Septiana , Saban Rahim , Richard A. McKenzie , Jumarddin La Fua

This study aims to elucidate the carrying capacity of estuarine mangroves in Southeast Sulawesi, to maintain environmental health of its coastal cities. The concentrations of mercury (Hg), Copper (Cu), Manganese (Mn), Lead (Pb), Zinc (Zn), and Nickel (Ni) were analyzed in sediments and mangrove tissues samples from Kendari bay and Tinanggea estuaries. This was followed by the determination of translocation and bioaccumulation factors, as well as the total accumulation of heavy metals on a landscape level. The results showed that the sediment in Kendari Bay had higher heavy metal concentrations than in Tinanggea, indicating the anthropogenic impact of the highly populated city of Kendari. Moreover, the roots and stems of mangroves had higher heavy metal concentrations than the leaves. Overall, the Bioconcentration Factors (BCF) of Hg, Cu, Mn, Pb and Zn metals were >1, indicating that estuarine mangroves have a higher phytoremediation capacity for heavy metals. Estuarine mangrove biomass also enables the high accumulation of heavy metals in both Kendari bay and Tinanggea, signifying the greater phytoremediation potential of urban estuarine mangroves. Based on these findings, the study supports the conservation and management of mangroves in urban estuaries to maintain the environmental health of coastal cities.

本研究旨在阐明苏拉威西岛东南部河口红树林的承载能力,以维持其沿海城市的环境健康。分析了Kendari湾和Tinanggea河口沉积物和红树林组织样品中汞(Hg)、铜(Cu)、锰(Mn)、铅(Pb)、锌(Zn)和镍(Ni)的浓度。随后确定了迁移和生物累积因素,以及重金属在景观水平上的总积累。结果表明,肯达里湾的沉积物中重金属浓度高于天南热,这表明人口稠密的肯达里市受到了人为影响。此外,红树林的根和茎的重金属浓度高于树叶。总体而言,Hg、Cu、Mn、Pb和Zn金属的生物富集因子(BCF)为>;1,表明河口红树林对重金属具有较高的植物修复能力。河口红树林生物量也使Kendari湾和Tinanggea的重金属含量高,这意味着城市河口红树林具有更大的植物修复潜力。基于这些发现,该研究支持城市河口红树林的保护和管理,以维护沿海城市的环境健康。
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引用次数: 1
Chitosan of blood cockle shell (Anadara granosa) as a natural coagulant for removal of total suspended solids (TSS) and turbidity of well-water 壳聚糖(Anadara granosa)作为天然混凝剂用于去除总悬浮固体(TSS)和井水浊度
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.04.004
Eko Siswoyo , Rahmalina Nur Zahra , Nurul Hardina A. Mai , Awaluddin Nurmiyanto , Kazuo Umemura , Thomas Boving

Blood clam or blood cockle (Anadara granosa) is a clam species with high calcium carbonate (CaCO3) and chitin content; these compounds are commonly used in coagulation water treatment. This study examined the capacity of blood cockle shells (BCS) as an innovative natural coagulant in the form of unmodified powder (BCSP) and chitosan extracted from the shells (BCSC) to reduce TSS and turbidity of well-water. SEM and FTIR analysis were conducted to analyse the characteristics of the media. The coagulant dose, pH of the water sample, and settling time were investigated using a jar test experiment to determine the optimum condition for each experimental system. Rapid mixing (1 min at 120 rpm) was followed by slow mixing (10 min at 60 rpm), followed by settling times ranging from 10 to 30 min. The optimum settling time was 30 min, after which 76% TSS and 76% turbidity were removed using 75 mg/l of BCSP at pH 4. The tests with BCSC resulted in 80% TSS and 81% turbidity removal with 200 mg/l of BCSC at pH 5 and a settling time of 30 min. The results were compared to the performance of alum (Al2(SO4)3·18H2O), a commercial chemical coagulant. Under similar dosage (200 mg/L) and pH (= 6) conditions, alum reduced turbidity and TSS by 95% and 97%, respectively. These results indicate that blood cockle shell-based coagulant is a promising environmental-friendly material that can compete and possibly replace conventional chemical coagulants in water treatment systems.

血蛤或血蛤(Anadara granosa)是一种具有高碳酸钙(CaCO3)和几丁质含量的蛤类;这些化合物通常用于凝结水处理。本研究以未改性粉末(BCSP)和壳聚糖提取物(BCSC)的形式考察了血鸡皮(BCS)作为一种创新的天然混凝剂降低TSS和井水浊度的能力。通过扫描电镜和红外光谱分析对介质的性质进行了分析。通过罐试验研究了混凝剂的剂量、水样的pH值和沉降时间,以确定每个实验系统的最佳条件。快速混合(在120rpm下1分钟)之后是缓慢混合(在60rpm下10分钟),然后是10至30分钟的沉降时间。最佳沉降时间为30分钟,之后在pH 4下使用75mg/l的BCSP去除76%的TSS和76%的浊度。BCSC的测试结果是,在pH 5和30分钟的沉降时间下,用200mg/l的BCSC去除80%的TSS和81%的浊度。将结果与商业化学混凝剂明矾(Al2(SO4)3·18H2O)的性能进行了比较。在相似的剂量(200mg/L)和pH(=6)条件下,明矾分别降低了95%和97%的浊度和TSS。这些结果表明,血贝壳基混凝剂是一种很有前途的环保材料,可以在水处理系统中与传统的化学混凝剂竞争,并有可能取代传统的化学絮凝剂。
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引用次数: 4
Gonadal growth and qualitative color assessment of the sea urchin Paracentrotus lividus Lamarck, 1816 (Echinodermata: Echinoidae) of the Southeastern Mediterranean Sea 地中海东南部海胆Paracentrtus lividus Lamarck,1816(棘皮动物门:棘皮动物科)的性腺生长和定性颜色评估
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.08.009
Elzahrae Elmasry , Abdel-Fattah M. El-Sayed , Fatma A. Abdelrazek

This study aims to investigate the gonadal growth and gonads qualitative color assessment of the sea urchin Paracentrotus lividus in the Southeastern (SE) Mediterranean coast off Egypt. A total of 1895 sea urchins were collected between 2017 and 2018, and their reproductive biology parameters were determined. The gonadosomatic index with the histological analysis revealed that P. lividus has two spawning seasons (spring – autumn). Females and males have four maturity stages; recovery, growing, mature, and spent. Mature oocytes and sperms were observed during autumn, winter, and spring, while nutritive phagocytes dominated the tissue of both ovaries and testes in the summer season. The sex ratio (F: M) was male-biased (1: 1.2). The smallest observed size of mature males was 19.10 mm TD (test diameter), whereas the calculated L50 was 26.2 mm. In females, the smallest observed size of a mature individual was 22.70 mm TD, and the calculated L50 was 33.5 mm TD. The qualitative color assessment of the gonads revealed the dominance of excellent and acceptable color throughout the year (83.93%), with maximum value during the resting and recovery periods, while, the occurrence of unacceptable color was linked to the maturation and spawning periods. The present findings would assist the decision makers to propose management strategies and regulations on the harvesting of P. lividus off the Egyptian Mediterranean coast.

本研究旨在调查埃及地中海东南部海岸的生活海胆Paracentrtus lividus的性腺生长和性腺定性颜色评估。2017年至2018年间,共采集了1895只海胆,并确定了它们的繁殖生物学参数。性腺小体指数和组织学分析表明,李维杜有两个产卵季节(春季-秋季)。雌性和雄性有四个成熟阶段;恢复、成长、成熟和消耗。成熟的卵母细胞和精子在秋季、冬季和春季被观察到,而营养吞噬细胞在夏季主导着卵巢和睾丸的组织。性别比(F:M)偏向男性(1:1.2)。观察到的成年男性最小尺寸为19.10 mm TD(测试直径),而计算出的L50为26.2 mm。在女性中,观察到的成熟个体最小尺寸为22.70 mm TD,计算出的L40为33.5 mm TD。性腺的定性颜色评估显示,全年(83.93%)性腺颜色以优良和可接受的颜色为主,在休息和恢复期达到最大值,而不可接受颜色的出现与成熟和产卵期有关。目前的研究结果将有助于决策者提出关于在埃及地中海沿岸收获P.lividus的管理战略和法规。
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引用次数: 0
Effect of brown algae Padina pavonica as a dietary supplement on growth performance and health status of cultured Oreochromis niloticus 褐藻Padina pavonica对尼罗罗非鱼生长性能和健康状况的影响
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.03.001
Asmaa Maghawri , Samar S. Marzouk , Heba M. Ezz El-Din , Mai Nashaat

Growth rates and health status of fish have been positively affected by adding dietary brown algae Padina pavonica as a meal. The present study aims to investigate the effects of P. pavonica on growth performance, hematology, biochemistry, and kidney and liver status of Nile tilapia (Oreochromis niloticus). The diets of Nile tilapia, with an initial weight of 4.58 ± 0.03 g, were enriched with 2.0, 4.0, 6.0 and 8.0 g/kg of P. pavonica concentrations for 45 days. This study was performed under two different conditions, i.e., experimental environment (A) and farming environment (B). At the end of the trial, the parameters of growth performance showed a significant difference between groups in experimental environment. However, they showed no significant difference in farming environment. The highest growth recorded with higher concentrations of P. pavonica diets (8.0 g/kg) as compared to their control in farming environment. In terms of hematological and biochemical parameters, this study revealed that there were highly significant differences (p ≤ 0.05) between the treated and control groups, with higher concentrations of algal meals (8.0 g/kg), in both farming and experimental environments.

添加褐藻Padina pavonica作为膳食对鱼类的生长率和健康状况产生了积极影响。本研究旨在研究帕沃尼察对尼罗罗非鱼(Oreochromis niloticus)生长性能、血液学、生物化学以及肾脏和肝脏状况的影响。尼罗罗非鱼的初始体重为4.58±0.03g,日粮中添加2.0、4.0、6.0和8.0g/kg的帕沃尼察P.pavonica浓度,持续45天。本研究是在两种不同的条件下进行的,即实验环境(A)和耕作环境(B)。试验结束时,在实验环境中,各组的生长性能参数存在显著差异。然而,它们在农业环境方面没有表现出显著差异。与在农业环境中的对照相比,在较高浓度的帕沃尼察日粮(8.0 g/kg)中记录的生长最高。在血液学和生化参数方面,本研究表明,在养殖和实验环境中,藻类粉浓度较高(8.0 g/kg)的处理组和对照组之间存在高度显著差异(p≤0.05)。
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引用次数: 1
Metabarcoding the zooplankton species of the Saudi Arabian Gulf: A study employing mock communities and two gene markers 沙特阿拉伯湾浮游动物物种的代谢编码:一项采用模拟群落和两种基因标记的研究
IF 3.5 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-01 DOI: 10.1016/j.ejar.2023.03.003
Biji K. Thomas , Karuppasamy Manikandan , Mohammed Qurban , Todd R. Clardy , Arumugam Sundaramanickam , Amjad Bajes Khalil , Jinoy Gopalan

Ecosystem health can be monitored by analyzing the species diversity and abundance in a region. The process of recognizing species based on morphology takes a lot of time and expertise. Metabarcoding and other modern molecular taxonomic methods can help speed up species identification. However, the choice of gene markers and primers, the lack of reference sequences in public databases, and the choice of tools used in bioinformatic analyses have a substantial impact on the observed diversity. To test the effectiveness of metabarcoding in assessing the species diversity, mock communities of zooplankton species found in the Saudi Arabian Gulf were assembled and subjected to high-throughput sequencing (HTS) using an Illumina MiSeq platform. Short CO1 and 28S nuclear gene fragments, containing the D2 region, of lengths 313 bp and 400 bp, respectively, were used as gene markers. Trimmomatic, Cutadapt, the FLASH read-merge software tool, and the USEARCH pipeline for OTU clustering were used in the bioinformatic analyses. Around 90% of the zooplankton species in the mock communities were detected. We conclude that the combination of CO1 and 28S markers is a quick and effective tool for evaluating zooplankton species diversity.

生态系统健康可以通过分析一个地区的物种多样性和丰度来监测。基于形态学识别物种的过程需要大量的时间和专业知识。代谢编码和其他现代分子分类学方法可以帮助加快物种鉴定。然而,基因标记和引物的选择、公共数据库中缺乏参考序列以及生物信息学分析中使用的工具的选择对观察到的多样性产生了重大影响。为了测试代谢编码在评估物种多样性方面的有效性,组装了在沙特阿拉伯湾发现的浮游动物物种的模拟群落,并使用Illumina MiSeq平台进行高通量测序(HTS)。使用长度分别为313bp和400bp的含有D2区的短CO1和28S核基因片段作为基因标记。生物信息学分析中使用了Trimmomatic、Cutadapt、FLASH读取合并软件工具和用于OTU聚类的USEARCH管道。模拟群落中大约90%的浮游动物物种被检测到。我们得出结论,CO1和28S标记的组合是评估浮游动物物种多样性的一种快速有效的工具。
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引用次数: 0
期刊
Egyptian Journal of Aquatic Research
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