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Single nucleus/cell RNA-seq of the chicken hypothalamic-pituitary-ovarian axis offers new insights into the molecular regulatory mechanisms of ovarian development. 鸡下丘脑-垂体-卵巢轴的单核/细胞 RNA 序列分析为卵巢发育的分子调控机制提供了新的视角。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2024.037
Dong Leng, Bo Zeng, Tao Wang, Bin-Long Chen, Di-Yan Li, Zhuan-Jian Li

The hypothalamic-pituitary-ovarian (HPO) axis represents a central neuroendocrine network essential for reproductive function. Despite its critical role, the intrinsic heterogeneity within the HPO axis across vertebrates and the complex intercellular interactions remain poorly defined. This study provides the first comprehensive, unbiased, cell type-specific molecular profiling of all three components of the HPO axis in adult Lohmann layers and Liangshan Yanying chickens. Within the hypothalamus, pituitary, and ovary, seven, 12, and 13 distinct cell types were identified, respectively. Results indicated that the pituitary adenylate cyclase activating polypeptide (PACAP), follicle-stimulating hormone (FSH), and prolactin (PRL) signaling pathways may modulate the synthesis and secretion of gonadotropin-releasing hormone (GnRH), FSH, and luteinizing hormone (LH) within the hypothalamus and pituitary. In the ovary, interactions between granulosa cells and oocytes involved the KIT, CD99, LIFR, FN1, and ANGPTL signaling pathways, which collectively regulate follicular maturation. The SEMA4 signaling pathway emerged as a critical mediator across all three tissues of the HPO axis. Additionally, gene expression analysis revealed that relaxin 3 (RLN3), gastrin-releasing peptide (GRP), and cocaine- and amphetamine regulated transcripts (CART, also known as CARTPT) may function as novel endocrine hormones, influencing the HPO axis through autocrine, paracrine, and endocrine pathways. Comparative analyses between Lohmann layers and Liangshan Yanying chickens demonstrated higher expression levels of GRP, RLN3, CARTPT, LHCGR, FSHR, and GRPR in the ovaries of Lohmann layers, potentially contributing to their superior reproductive performance. In conclusion, this study provides a detailed molecular characterization of the HPO axis, offering novel insights into the regulatory mechanisms underlying reproductive biology.

下丘脑-垂体-卵巢(HPO)轴是对生殖功能至关重要的中枢神经内分泌网络。尽管下丘脑-垂体-卵巢轴发挥着关键作用,但其在脊椎动物中的内在异质性和复杂的细胞间相互作用仍鲜为人知。本研究首次对成年罗曼蛋鸡和凉山盐化鸡 HPO 轴的所有三个组成部分进行了全面、无偏见、细胞类型特异性的分子图谱分析。在下丘脑、垂体和卵巢中,分别发现了 7、12 和 13 种不同的细胞类型。结果表明,垂体腺苷酸环化酶激活多肽(PACAP)、卵泡刺激素(FSH)和催乳素(PRL)信号通路可调节下丘脑和垂体内促性腺激素释放激素(GnRH)、FSH和黄体生成素(LH)的合成和分泌。在卵巢中,颗粒细胞和卵母细胞之间的相互作用涉及 KIT、CD99、LIFR、FN1 和 ANGPTL 信号通路,它们共同调节卵泡的成熟。SEMA4 信号通路是 HPO 轴上所有三个组织的关键介质。此外,基因表达分析表明,弛缓素 3(RLN3)、胃泌素释放肽(GRP)以及可卡因和苯丙胺调控转录物(CART,又称 CARTPT)可作为新型内分泌激素发挥作用,通过自分泌、旁分泌和内分泌途径影响 HPO 轴。罗曼蛋鸡和凉山盐肤鸡的比较分析表明,罗曼蛋鸡卵巢中的GRP、RLN3、CARTPT、LHCGR、FSHR和GRPR的表达水平更高,这可能是其繁殖性能更优越的原因。总之,本研究提供了 HPO 轴的详细分子特征,为生殖生物学的基础调控机制提供了新的见解。
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引用次数: 0
PRSS50-mediated inhibition of MKP3/ERK signaling is crucial for meiotic progression and sperm quality. PRSS50 介导的 MKP3/ERK 信号抑制对减数分裂进程和精子质量至关重要。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2023.388
Chun-Xue Niu, Jia-Wei Li, Xiao-Li Li, Lin-Lin Zhang, Yan Lang, Zhen-Bo Song, Chun-Lei Yu, Xiao-Guang Yang, Hai-Feng Zhao, Jia-Ling Sun, Li-Hua Zheng, Xue Wang, Ying Sun, Xiao-Hong Han, Guan-Nan Wang, Yong-Li Bao

Serine protease 50 (PRSS50/TSP50) is highly expressed in spermatocytes. Our study investigated its role in testicular development and spermatogenesis. Initially, PRSS50 knockdown was observed to impair DNA synthesis in spermatocytes. To further explore this, we generated PRSS50 knockout ( Prss50 -/- ) mice ( Mus musculus), which exhibited abnormal spermatid nuclear compression and reduced male fertility. Furthermore, dysplastic seminiferous tubules and decreased sex hormones were observed in 4-week-old Prss50 -/- mice, accompanied by meiotic progression defects and increased apoptosis of spermatogenic cells. Mechanistic analysis indicated that PRSS50 deletion resulted in increased phosphorylation of extracellular signal-regulated protein kinases 1 and 2 (ERK1/2) and elevated levels of MAP kinase phosphatase 3 (MKP3), a specific ERK antagonist, potentially accounting for testicular dysplasia in adolescent Prss50 -/- mice. Taken together, these findings suggest that PRSS50 plays an important role in testicular development and spermatogenesis, with the MKP3/ERK signaling pathway playing a significant role in this process.

丝氨酸蛋白酶 50(PRSS50/TSP50)在精母细胞中高度表达。我们的研究调查了它在睾丸发育和精子生成中的作用。最初,我们观察到 PRSS50 基因敲除会影响精母细胞的 DNA 合成。为了进一步探讨这个问题,我们产生了PRSS50基因敲除(Prss50 -/- )小鼠(麝鼠),它们表现出精子核压缩异常和雄性生育能力下降。此外,在4周龄的Prss50 -/-小鼠身上还观察到发育不良的曲细精管和性激素减少,同时伴有减数分裂进展缺陷和生精细胞凋亡增加。机理分析表明,PRSS50缺失会导致细胞外信号调节蛋白激酶1和2(ERK1/2)磷酸化增加,以及MAP激酶磷酸酶3(MKP3)(一种特异性ERK拮抗剂)水平升高,这可能是青春期Prss50 -/-小鼠睾丸发育不良的原因。综上所述,这些研究结果表明,PRSS50在睾丸发育和精子生成过程中发挥着重要作用,而MKP3/ERK信号通路在这一过程中发挥着重要作用。
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引用次数: 0
Bat-derived oligopeptide LE6 inhibits the contact-kinin pathway and harbors anti-thromboinflammation and stroke potential. 蝙蝠提取的寡肽 LE6 可抑制接触激肽通路,并具有抗血栓炎和中风的潜力。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2023.372
Li-Na Cha, Juan Yang, Jin-Ai Gao, Xin Lu, Xiao-Long Chang, Rebecca Caroline Thuku, Qi Liu, Qiu-Min Lu, Dong-Sheng Li, Ren Lai, Ming-Qian Fang

Thrombosis and inflammation are primary contributors to the onset and progression of ischemic stroke. The contact-kinin pathway, initiated by plasma kallikrein (PK) and activated factor XII (FXIIa), functions bidirectionally with the coagulation and inflammation cascades, providing a novel target for therapeutic drug development in ischemic stroke. In this study, we identified a bat-derived oligopeptide from Myotis myotis (Borkhausen, 1797), designated LE6 (Leu-Ser-Glu-Glu-Pro-Glu, 702 Da), with considerable potential in stroke therapy due to its effects on the contact kinin pathway. Notably, LE6 demonstrated significant inhibitory effects on PK and FXIIa, with inhibition constants of 43.97 μmol/L and 6.37 μmol/L, respectively. In vitro analyses revealed that LE6 prolonged plasma recalcification time and activated partial thromboplastin time. In murine models, LE6 effectively inhibited carrageenan-induced mouse tail thrombosis, FeCl 3-induced carotid artery thrombosis, and photochemically induced intracerebral thrombosis. Furthermore, LE6 significantly decreased inflammation and stroke injury in transient middle cerebral artery occlusion models. Notably, the low toxicity, hemolytic activity, and bleeding risk of LE6, along with its synthetic simplicity, underscore its clinical applicability. In conclusion, as an inhibitor of FXIIa and PK, LE6 offers potential therapeutic benefits in stroke treatment by mitigating inflammation and preventing thrombus formation.

血栓形成和炎症是缺血性中风发病和进展的主要因素。由血浆激肽(PK)和活化因子 XII(FXIIa)启动的接触激肽通路与凝血和炎症级联具有双向作用,为缺血性中风的治疗药物开发提供了一个新的靶点。在这项研究中,我们从麝香猫(Myotis myotis,Borkhausen,1797 年)身上发现了一种蝙蝠提取的寡肽,命名为 LE6(Leu-Ser-Glu-Glu-Pro-Glu,702 Da),由于它对接触激肽通路有影响,因此在中风治疗中具有相当大的潜力。值得注意的是,LE6 对 PK 和 FXIIa 有显著的抑制作用,抑制常数分别为 43.97 μmol/L 和 6.37 μmol/L。体外分析表明,LE6 可延长血浆再钙化时间和活化部分凝血活酶时间。在小鼠模型中,LE6能有效抑制卡拉胶诱导的小鼠尾部血栓形成、氯化铁3诱导的颈动脉血栓形成以及光化学诱导的脑内血栓形成。此外,LE6 还能明显减轻一过性大脑中动脉闭塞模型中的炎症和中风损伤。值得注意的是,LE6 的低毒性、低溶血活性和低出血风险,以及其合成的简易性都突出了它的临床适用性。总之,作为一种 FXIIa 和 PK 抑制剂,LE6 可通过减轻炎症和防止血栓形成为中风治疗提供潜在的治疗益处。
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引用次数: 0
Mandarin fish von Hippel-Lindau protein regulates the NF-κB signaling pathway via interaction with IκB to promote fish ranavirus replication. 鳜鱼von Hippel-Lindau蛋白通过与IκB相互作用调节NF-κB信号通路,从而促进鱼类Ranavirus的复制。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2023.392
Zhi-Min Li, Xiao-Wei Qin, Qi Zhang, Jian He, Min-Cong Liang, Chuan-Rui Li, Yang Yu, Weng-Hui Liu, Shao-Ping Weng, Jian-Guo He, Chang-Jun Guo

The von Hippel-Lindau tumor suppressor protein (VHL), an E3 ubiquitin ligase, functions as a critical regulator of the oxygen-sensing pathway for targeting hypoxia-inducible factors. Recent evidence suggests that mammalian VHL may also be critical to the NF-κB signaling pathway, although the specific molecular mechanisms remain unclear. Herein, the roles of mandarin fish ( Siniperca chuatsi) VHL ( scVHL) in the NF-κB signaling pathway and mandarin fish ranavirus (MRV) replication were explored. The transcription of scVHL was induced by immune stimulation and MRV infection, indicating a potential role in innate immunity. Dual-luciferase reporter gene assays and reverse transcription quantitative PCR (RT-qPCR) results demonstrated that scVHL evoked and positively regulated the NF-κB signaling pathway. Treatment with NF-κB signaling pathway inhibitors indicated that the role of scVHL may be mediated through scIKKα, scIKKβ, scIκBα, or scp65. Co-immunoprecipitation (Co-IP) analysis identified scIκBα as a novel target protein of scVHL. Moreover, scVHL targeted scIκBα to catalyze the formation of K63-linked polyubiquitin chains to activate the NF-κB signaling pathway. Following MRV infection, NF-κB signaling remained activated, which, in turn, promoted MRV replication. These findings suggest that scVHL not only positively regulates NF-κB but also significantly enhances MRV replication. This study reveals a novel function of scVHL in NF-κB signaling and viral infection in fish.

Von Hippel-Lindau肿瘤抑制蛋白(VHL)是一种E3泛素连接酶,是氧传感通路的关键调节因子,可靶向缺氧诱导因子。最近的证据表明,哺乳动物的 VHL 也可能是 NF-κB 信号通路的关键,但具体的分子机制仍不清楚。本文探讨了鳜鱼VHL(scVHL)在NF-κB信号通路和鳜鱼病毒(MRV)复制中的作用。scVHL的转录受免疫刺激和MRV感染的诱导,表明其在先天性免疫中的潜在作用。双荧光素酶报告基因检测和反转录定量 PCR(RT-qPCR)结果表明,scVHL 可诱导并正向调节 NF-κB 信号通路。用NF-κB信号通路抑制剂处理表明,scVHL的作用可能是通过scIKKα、scIKKβ、scIκBα或scp65介导的。共免疫沉淀(Co-IP)分析发现,scIκBα是scVHL的一种新型靶蛋白。此外,scVHL以scIκBα为靶蛋白,催化K63连接的多泛素链的形成,从而激活NF-κB信号通路。MRV感染后,NF-κB信号仍处于激活状态,这反过来又促进了MRV的复制。这些发现表明,scVHL 不仅能正向调节 NF-κB,还能显著增强 MRV 复制。这项研究揭示了scVHL在鱼类NF-κB信号传导和病毒感染中的新功能。
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引用次数: 0
Experimental models for preclinical research in kidney disease. 肾病临床前研究的实验模型。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2024.072
Jin Miao, Huanhuan Zhu, Junni Wang, Jianghua Chen, Fei Han, Weiqiang Lin

Acute kidney injury (AKI) and chronic kidney disease (CKD) are significant public health issues associated with a long-term increase in mortality risk, resulting from various etiologies including renal ischemia, sepsis, drug toxicity, and diabetes mellitus. Numerous preclinical models have been developed to deepen our understanding of the pathophysiological mechanisms and therapeutic approaches for kidney diseases. Among these, rodent models have proven to be powerful tools in the discovery of novel therapeutics, while the development of kidney organoids has emerged as a promising advancement in the field. This review provides a comprehensive analysis of the construction methodologies, underlying biological mechanisms, and recent therapeutic developments across different AKI and CKD models. Additionally, this review summarizes the advantages, limitations, and challenges inherent in these preclinical models, thereby contributing robust evidence to support the development of effective therapeutic strategies.

急性肾损伤(AKI)和慢性肾脏病(CKD)是重要的公共卫生问题,它们会导致死亡率风险长期增加,其病因多种多样,包括肾缺血、败血症、药物中毒和糖尿病。为了加深我们对肾脏疾病的病理生理机制和治疗方法的了解,已经开发了许多临床前模型。其中,啮齿类动物模型已被证明是发现新型疗法的有力工具,而肾脏器官组织的开发已成为该领域的一大进步。本综述全面分析了不同 AKI 和 CKD 模型的构建方法、基本生物学机制和最新治疗进展。此外,本综述还总结了这些临床前模型固有的优势、局限性和挑战,从而为支持有效治疗策略的开发提供有力的证据。
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引用次数: 0
Synergistic effects of Pleistocene geological and climatic events on complex phylogeographic history of widespread sympatric species of Megaloptera in East Asia. 更新世地质和气候事件对东亚广泛分布的同域巨蝶物种复杂系统地理历史的协同效应。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2024.056
Ai-Li Lin, Ming-Ming Zou, Li-Jun Cao, Fumio Hayashi, Ding Yang, Xing-Yue Liu

Unraveling the phylogeographic histories of species remains a key endeavor for comprehending the evolutionary processes contributing to the rich biodiversity and high endemism found in East Asia. In this study, we explored the phylogeographic patterns and demographic histories of three endemic fishfly and dobsonfly species ( Neochauliodes formosanus, Protohermes costalis, and Neoneuromus orientalis) belonging to the holometabolan order Megaloptera. These species, which share a broad and largely overlapping distribution, were analyzed using comprehensive mitogenomic data. Our findings revealed a consistent influence of vicariance on the population isolation of Neoc. formosanus and P. costalis between Hainan, Taiwan, and the East Asian mainland during the early Pleistocene, potentially hindering subsequent colonization of the later diverged Neon. orientalis to these islands. Additionally, we unveiled the dual function of the major mountain ranges in East Asia, serving both as barriers and conduits, in shaping the population structure of all three species. Notably, we demonstrated that these co-distributed species originated from Southwest, Southern, and eastern Central China, respectively, then subsequently migrated along multi-directional routes, leading to their sympatric distribution on the East Asian mainland. Furthermore, our results highlighted the significance of Pleistocene land bridges along the eastern coast of East Asia in facilitating the dispersal of mountain-dwelling insects with low dispersal ability. Overall, this study provides novel insight into the synergistic impact of Pleistocene geological and climatic events in shaping the diversity and distribution of aquatic insects in East Asia.

要理解东亚丰富的生物多样性和高度特有性的进化过程,揭示物种的系统地理历史仍是一项关键工作。在这项研究中,我们探讨了属于全翅目(holometabolan order Megaloptera)的三个特有鱼蝇和多臂蝇物种(Neochauliodes formosanus、Protohermes costalis和Neoneuromus orientalis)的系统地理格局和人口历史。我们利用全面的有丝分裂基因组数据分析了这些分布广泛且基本重叠的物种。我们的研究结果表明,在早更新世期间,海南、台湾和东亚大陆之间的Neoc.formosanus和P. costalis种群隔离受到了沧海桑田的一致影响,这可能阻碍了后来分化的Neon.orientalis向这些岛屿的殖民。此外,我们还揭示了东亚主要山脉在塑造这三个物种种群结构方面的双重功能,既是屏障,又是通道。值得注意的是,我们证明了这些共同分布的物种分别起源于中国西南、华南和华中东部,随后沿着多向路线迁移,导致它们在东亚大陆的同域分布。此外,我们的研究结果突显了东亚东部沿海更新世陆桥在促进低扩散能力的山栖昆虫扩散方面的重要作用。总之,本研究为更新世地质和气候事件在塑造东亚水生昆虫多样性和分布方面的协同影响提供了新的见解。
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引用次数: 0
Cadherin-18 loss in prospermatogonia and spermatogonial stem cells enhances cell adhesion through a compensatory mechanism. 前精原细胞和精原干细胞中 Cadherin-18 的缺失可通过补偿机制增强细胞粘附力。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2023.373
Xiao-Xiao Li, Dan-Chen Zhang, Yan Wang, Jian Wen, Xing-Ju Wang, Yu-Lu Cao, Ru Jiang, Jia-Rui Li, Yi-Nuo Li, He-He Liu, Wen-Hai Xie, Zheng-Feng Xu, Ping Hu, Kang Zou

Extracellular membrane proteins are crucial for mediating cell attachment, recognition, and signal transduction in the testicular microenvironment, particularly germline stem cells. Cadherin 18 (CDH18), a type II classical cadherin, is primarily expressed in the nervous and reproductive systems. Here, we investigated the expression of CDH18 in neonatal porcine prospermatogonia (ProSGs) and murine spermatogonial stem cells (SSCs). Disruption of CDH18 expression did not adversely affect cell morphology, proliferation, self-renewal, or differentiation in cultured porcine ProSGs, but enhanced cell adhesion and prolonged cell maintenance. Transcriptomic analysis indicated that the down-regulation of CDH18 in ProSGs significantly up-regulated genes and signaling pathways associated with cell adhesion. To further elucidate the function of CDH18 in germ cells, Cdh18 knockout mice were generated, which exhibited normal testicular morphology, histology, and spermatogenesis. Transcriptomic analysis showed increased expression of genes associated with adhesion, consistent with the observations in porcine ProSGs. The interaction of CDH18 with β-catenin and JAK2 in both porcine ProSGs and murine SSCs suggested an inhibitory effect on the canonical Wnt and JAK-STAT signaling pathways during CDH18 deficiency. Collectively, these findings highlight the crucial role of CDH18 in regulating cell adhesion in porcine ProSGs and mouse SSCs. Understanding this regulatory mechanism provides significant insights into the testicular niche.

在睾丸微环境(尤其是生殖干细胞)中,细胞膜外蛋白对介导细胞附着、识别和信号转导至关重要。钙粘蛋白18(CDH18)是一种II型经典钙粘蛋白,主要在神经和生殖系统中表达。在这里,我们研究了CDH18在新生猪前精原细胞(ProSGs)和小鼠精原干细胞(SSCs)中的表达。在培养的猪前精原细胞中,中断CDH18的表达不会对细胞形态、增殖、自我更新或分化产生不利影响,但会增强细胞粘附性并延长细胞维持时间。转录组分析表明,CDH18在ProSGs中的下调显著上调了与细胞粘附相关的基因和信号通路。为了进一步阐明 CDH18 在生殖细胞中的功能,研究人员产生了 Cdh18 基因敲除小鼠,这些小鼠的睾丸形态、组织学和精子发生均正常。转录组分析表明,与粘附相关的基因表达增加,这与在猪 ProSGs 中观察到的结果一致。在猪ProSGs和小鼠SSCs中,CDH18与β-catenin和JAK2的相互作用表明,CDH18缺乏时对典型Wnt和JAK-STAT信号通路有抑制作用。总之,这些发现凸显了 CDH18 在猪 ProSGs 和小鼠 SSCs 中调节细胞粘附的关键作用。了解这一调控机制有助于深入了解睾丸龛位。
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引用次数: 0
CCDC181 is required for sperm flagellum biogenesis and male fertility in mice. CCDC181 是小鼠精子鞭毛生物发生和雄性生育能力的必要条件。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2024.075
Xiang-Jun Zhang, Xiao-Ning Hou, Jian-Teng Zhou, Bao-Lu Shi, Jing-Wei Ye, Meng-Lei Yang, Xiao-Hua Jiang, Bo Xu, Li-Min Wu, Qing-Hua Shi

The structural integrity of the sperm flagellum is essential for proper sperm function. Flagellar defects can result in male infertility, yet the precise mechanisms underlying this relationship are not fully understood. CCDC181, a coiled-coil domain-containing protein, is known to localize on sperm flagella and at the basal regions of motile cilia. Despite this knowledge, the specific functions of CCDC181 in flagellum biogenesis remain unclear. In this study, Ccdc181 knockout mice were generated. The absence of CCDC181 led to defective sperm head shaping and flagellum formation. Furthermore, the Ccdc181 knockout mice exhibited extremely low sperm counts, grossly aberrant sperm morphologies, markedly diminished sperm motility, and typical multiple morphological abnormalities of the flagella (MMAF). Additionally, an interaction between CCDC181 and the MMAF-related protein LRRC46 was identified, with CCDC181 regulating the localization of LRRC46 within sperm flagella. These findings suggest that CCDC181 plays a crucial role in both manchette formation and sperm flagellum biogenesis.

精子鞭毛结构的完整性对精子的正常功能至关重要。鞭毛缺陷可导致男性不育,但这种关系的确切机制尚不完全清楚。众所周知,CCDC181 是一种含线圈结构域的蛋白质,定位于精子鞭毛和运动纤毛的基部区域。尽管如此,CCDC181 在鞭毛生物发生过程中的具体功能仍不清楚。本研究生成了 Ccdc181 基因敲除小鼠。CCDC181 的缺失导致精子头部塑形和鞭毛形成缺陷。此外,Ccdc181 基因敲除小鼠表现出极低的精子数量、严重异常的精子形态、明显减弱的精子活力以及典型的鞭毛多重形态异常(MMAF)。此外,还发现了 CCDC181 与 MMAF 相关蛋白 LRRC46 之间的相互作用,CCDC181 可调节 LRRC46 在精子鞭毛内的定位。这些研究结果表明,CCDC181 在芒棘形成和精子鞭毛生物发生过程中都起着至关重要的作用。
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引用次数: 0
Chromosome-level genome and population genomics of the intermediate horseshoe bat ( Rhinolophus affinis) reveal the molecular basis of virus tolerance in Rhinolophus and echolocation call frequency variation. 中型马蹄蝠(Rhinolophus affinis)染色体组水平的基因组学和种群基因组学揭示了马蹄蝠耐受病毒和回声定位呼叫频率变异的分子基础。
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-09-18 DOI: 10.24272/j.issn.2095-8137.2024.027
Le Zhao, Jiaqing Yuan, Guiqiang Wang, Haohao Jing, Chen Huang, Lulu Xu, Xiao Xu, Ting Sun, Wu Chen, Xiuguang Mao, Gang Li

Horseshoe bats (genus Rhinolophus, family Rhinolophidae) represent an important group within chiropteran phylogeny due to their distinctive traits, including constant high-frequency echolocation, rapid karyotype evolution, and unique immune system. Advances in evolutionary biology, supported by high-quality reference genomes and comprehensive whole-genome data, have significantly enhanced our understanding of species origins, speciation mechanisms, adaptive evolutionary processes, and phenotypic diversity. However, genomic research and understanding of the evolutionary patterns of Rhinolophus are severely constrained by limited data, with only a single published genome of R. ferrumequinum currently available. In this study, we constructed a high-quality chromosome-level reference genome for the intermediate horseshoe bat ( R. affinis). Comparative genomic analyses revealed potential genetic characteristics associated with virus tolerance in Rhinolophidae. Notably, we observed expansions in several immune-related gene families and identified various genes functionally associated with the SARS-CoV-2 signaling pathway, DNA repair, and apoptosis, which displayed signs of rapid evolution. In addition, we observed an expansion of the major histocompatibility complex class II (MHC-II) region and a higher copy number of the HLA- DQB2 gene in horseshoe bats compared to other chiropteran species. Based on whole-genome resequencing and population genomic analyses, we identified multiple candidate loci (e.g., GLI3) associated with variations in echolocation call frequency across R. affinis subspecies. This research not only expands our understanding of the genetic characteristics of the Rhinolophus genus but also establishes a valuable foundation for future research.

马蹄蝠(Rhinolophus 属,Rhinolophidae 科)因其独特的特征(包括持续的高频回声定位、快速的核型进化和独特的免疫系统)而成为脊索动物系统发育中的一个重要类群。在高质量参考基因组和全面的全基因组数据的支持下,进化生物学的进步大大提高了我们对物种起源、物种分化机制、适应性进化过程和表型多样性的认识。然而,基因组研究和对犀牛进化模式的理解受到有限数据的严重制约,目前仅有一个已发表的 R. ferrumequinum 基因组。在这项研究中,我们为中型马蹄蝠(R. affinis)构建了高质量的染色体级参考基因组。比较基因组分析揭示了与鼻蝠科耐受病毒有关的潜在遗传特征。值得注意的是,我们观察到几个免疫相关基因家族的扩展,并发现了与SARS-CoV-2信号通路、DNA修复和细胞凋亡功能相关的各种基因,这些基因显示出快速进化的迹象。此外,我们还观察到马蹄蝠的主要组织相容性复合体 II 类(MHC-II)区域扩大,HLA- DQB2 基因的拷贝数也高于其他蹄类动物。基于全基因组重测序和种群基因组分析,我们确定了与马蹄蝠各亚种回声定位呼叫频率变化相关的多个候选位点(如 GLI3)。这项研究不仅拓展了我们对犀牛属遗传特征的了解,而且为未来的研究奠定了宝贵的基础。
{"title":"Chromosome-level genome and population genomics of the intermediate horseshoe bat ( <i>Rhinolophus affinis)</i> reveal the molecular basis of virus tolerance in <i>Rhinolophus</i> and echolocation call frequency variation.","authors":"Le Zhao, Jiaqing Yuan, Guiqiang Wang, Haohao Jing, Chen Huang, Lulu Xu, Xiao Xu, Ting Sun, Wu Chen, Xiuguang Mao, Gang Li","doi":"10.24272/j.issn.2095-8137.2024.027","DOIUrl":"10.24272/j.issn.2095-8137.2024.027","url":null,"abstract":"<p><p>Horseshoe bats (genus <i>Rhinolophus</i>, family Rhinolophidae) represent an important group within chiropteran phylogeny due to their distinctive traits, including constant high-frequency echolocation, rapid karyotype evolution, and unique immune system. Advances in evolutionary biology, supported by high-quality reference genomes and comprehensive whole-genome data, have significantly enhanced our understanding of species origins, speciation mechanisms, adaptive evolutionary processes, and phenotypic diversity. However, genomic research and understanding of the evolutionary patterns of <i>Rhinolophus</i> are severely constrained by limited data, with only a single published genome of <i>R. ferrumequinum</i> currently available. In this study, we constructed a high-quality chromosome-level reference genome for the intermediate horseshoe bat ( <i>R. affinis</i>). Comparative genomic analyses revealed potential genetic characteristics associated with virus tolerance in Rhinolophidae. Notably, we observed expansions in several immune-related gene families and identified various genes functionally associated with the SARS-CoV-2 signaling pathway, DNA repair, and apoptosis, which displayed signs of rapid evolution. In addition, we observed an expansion of the major histocompatibility complex class II (MHC-II) region and a higher copy number of the <i>HLA</i>- <i>DQB2</i> gene in horseshoe bats compared to other chiropteran species. Based on whole-genome resequencing and population genomic analyses, we identified multiple candidate loci (e.g., <i>GLI3</i>) associated with variations in echolocation call frequency across <i>R. affinis</i> subspecies. This research not only expands our understanding of the genetic characteristics of the <i>Rhinolophus</i> genus but also establishes a valuable foundation for future research.</p>","PeriodicalId":48636,"journal":{"name":"Zoological Research","volume":"45 5","pages":"1147-1160"},"PeriodicalIF":4.0,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11491789/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142298920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolomic-based analysis reveals bile acid-mediated ovarian failure induced by low temperature in zebrafish. 基于代谢组学的分析揭示了低温诱导斑马鱼卵巢功能衰竭的胆汁酸介导机制
IF 4 1区 生物学 Q1 ZOOLOGY Pub Date : 2024-07-18 DOI: 10.24272/j.issn.2095-8137.2023.369
Wen-Hao Li, Zhi-Qiang Li, Meng-Di Bu, Jia-Zhen Li, Liang-Biao Chen

As ectotherms, fish are highly sensitive to temperature fluctuations, which can profoundly impact their reproductive cycles. In this study, we investigated the fertility and histological characteristics of zebrafish ( Danio rerio) ovaries exposed to a temperature gradient ranging from the thermopreferendum temperature of the species, 27°C, to lower temperatures of 22°C, 20°C, and 13°C over a period of two weeks. Comparative metabolomic (six biological replicates for each temperature) and transcriptomic (four biological replicates for each temperature) analyses were conducted under the four temperature conditions. Results indicated that lower temperatures inhibited oocyte development and differential metabolites were involved in steroid hormone production, antioxidant function, and lipid and protein catabolism. Disrupted reproductive hormones, increased proteolysis, and lipid degradation significantly impeded oocyte development and egg maturation. Notably, a significant increase in bile acid content was noted in the ovaries of the cold-treated fish, indicating that bile acids play a critical role in ovarian failure. Overall, these findings provide valuable insights into the mechanisms governing the reproductive response of fish to cold stress.

作为外温动物,鱼类对温度波动高度敏感,而温度波动会对其生殖周期产生深远影响。在这项研究中,我们调查了斑马鱼(Danio rerio)卵巢在温度梯度下的生殖力和组织学特征,温度梯度从该物种的恒温温度 27°C 到较低温度 22°C、20°C 和 13°C,历时两周。在四种温度条件下进行了代谢组(每种温度六个生物重复)和转录组(每种温度四个生物重复)比较分析。结果表明,较低的温度抑制了卵母细胞的发育,不同的代谢物参与了类固醇激素的产生、抗氧化功能以及脂质和蛋白质的分解代谢。生殖激素紊乱、蛋白质分解增加和脂质降解严重阻碍了卵母细胞的发育和卵子的成熟。值得注意的是,冷处理鱼卵巢中的胆汁酸含量明显增加,表明胆汁酸在卵巢功能衰竭中起着关键作用。总之,这些发现为了解鱼类对冷应激的生殖反应机制提供了宝贵的见解。
{"title":"Metabolomic-based analysis reveals bile acid-mediated ovarian failure induced by low temperature in zebrafish.","authors":"Wen-Hao Li, Zhi-Qiang Li, Meng-Di Bu, Jia-Zhen Li, Liang-Biao Chen","doi":"10.24272/j.issn.2095-8137.2023.369","DOIUrl":"10.24272/j.issn.2095-8137.2023.369","url":null,"abstract":"<p><p>As ectotherms, fish are highly sensitive to temperature fluctuations, which can profoundly impact their reproductive cycles. In this study, we investigated the fertility and histological characteristics of zebrafish ( <i>Danio rerio</i>) ovaries exposed to a temperature gradient ranging from the thermopreferendum temperature of the species, 27°C, to lower temperatures of 22°C, 20°C, and 13°C over a period of two weeks. Comparative metabolomic (six biological replicates for each temperature) and transcriptomic (four biological replicates for each temperature) analyses were conducted under the four temperature conditions. Results indicated that lower temperatures inhibited oocyte development and differential metabolites were involved in steroid hormone production, antioxidant function, and lipid and protein catabolism. Disrupted reproductive hormones, increased proteolysis, and lipid degradation significantly impeded oocyte development and egg maturation. Notably, a significant increase in bile acid content was noted in the ovaries of the cold-treated fish, indicating that bile acids play a critical role in ovarian failure. Overall, these findings provide valuable insights into the mechanisms governing the reproductive response of fish to cold stress.</p>","PeriodicalId":48636,"journal":{"name":"Zoological Research","volume":"45 4","pages":"791-804"},"PeriodicalIF":4.0,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11298673/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141421443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Zoological Research
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