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Correlation of MammaPrint to Histopathologic Variables and Comparison to Magee Equations in Adjuvant and Neoadjuvant Cohorts of Estrogen-Receptor Positive HER2-Negative Breast Carcinoma. 在雌激素受体阳性her2阴性乳腺癌的辅助和新辅助队列中,MammaPrint与组织病理变量的相关性和Magee方程的比较。
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-05-13 DOI: 10.1097/PAI.0000000000001262
Mariel Bedell, Tatiana M Villatoro, Stephanie N David, Beth Z Clark, Jeffrey L Fine, Jing Yu, Rohit Bhargava

MammaPrint (MP) is a multigene assay utilized for prognostic and predictive use in early stage ER+/HER2-negative breast cancer (BC). There is limited data on MP correlation to histopathologic variables, including multivariable model Magee Equations (MEs). We compared pathologic variables to MP on 365 ER+/HER2-negative BCs in the adjuvant setting. Further, we analyzed MP and ME results in 26 core biopsy-proven ER+/HER2-negative BCs subjected to neoadjuvant chemotherapy (NACT). Post-NACT response was assessed by residual cancer burden (RCB) score. In the adjuvant cohort (n=365), high-risk (HR) MP correlated with high Nottingham score, low progesterone receptor H-score, ductal morphology, high Ki-67 index, and high ME score. In the neoadjuvant cohort (n=26), 24 were MP-HR and 2 were MP low-risk (MP-LR). The 2 MP-LR cases correlated with average ME scores of ≤25 and showed RCB scores of 2 or 3. Of the 24 MP-HR, 2 showed RCB-0 or RCB-1. Average ME>25 was seen in both of these cases and 7 others corresponding to an RCB-0 and RCB-1 rate of 22% (2 of 9) with ME>25 compared with 8% (2 of 24) with MP-HR. Lack of significant benefit from NACT (RCB-2 or RCB-3) was accurately predicted by average ME≤25 in 17 of 26 cases (65%) compared with only 2 of 26 cases (8%) with MP-LR. MP correlates with aggressive histopathologic features. While both MP and ME identified cases with robust chemotherapeutic response, MP overpredicted cases that would benefit. Therefore, MEs may more accurately predict response to NACT.

MammaPrint (MP)是一种多基因检测方法,用于早期ER+/ her2阴性乳腺癌(BC)的预后和预测。MP与组织病理学变量的相关性数据有限,包括多变量模型Magee方程(MEs)。我们比较了辅助治疗中365例ER+/ her2阴性bc的病理变量和MP。此外,我们分析了26例接受新辅助化疗(NACT)的核心活检证实的ER+/ her2阴性bc的MP和ME结果。通过残余癌症负担(RCB)评分评估nact后的反应。在辅助队列(n=365)中,高危MP与高Nottingham评分、低孕激素受体h评分、导管形态、高Ki-67指数和高ME评分相关。在新辅助治疗组(n=26)中,24例MP- hr, 2例MP低危(MP- lr)。2例MP-LR患者ME平均评分≤25分,RCB评分为2或3分。24例MP-HR中,2例RCB-0或RCB-1。这两例患者的平均ME bbb25和其他7例患者的RCB-0和RCB-1发生率分别为22%(2 / 9)和8%(2 / 24)。26例患者中有17例(65%)的平均ME≤25准确预测了NACT (RCB-2或RCB-3)缺乏显著获益,而26例MP-LR患者中只有2例(8%)。MP与侵袭性组织病理特征相关。虽然MP和ME都确定了具有强大化疗反应的病例,但MP高估了将受益的病例。因此,MEs可以更准确地预测对NACT的反应。
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引用次数: 0
TAGLN2-mediated Actin Cytoskeleton Stabilization Promotes Proliferation and Metastasis of Ovarian Carcinoma. tagln2介导的肌动蛋白细胞骨架稳定促进卵巢癌增殖和转移。
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-04-18 DOI: 10.1097/PAI.0000000000001261
Xiaoxiao Qiu, Mengting Jiang, Haiyan Qu, Lin Kong, Zhihong Chai

Transgelin-2 (TAGLN2) is an actin-binding protein associated with tumor progression, particularly in gastric and brain tumors. However, its role in ovarian cancer metastasis is still not fully understood. This study investigated the role of TAGLN2 and its potential mechanism in ovarian cancer metastasis. TAGLN2 expression in ovarian cancer and normal tissues was assessed using Oncomine, Human Protein Atlas (HPA), and immunocytochemistry (IHC). Skov3 cells with TAGLN2 knockdown (transient knockdown of TAGLN2 of homo TAGLN2 was performed using specific small interfering RNAs), and Skov3 cells transfected with scrambled siRNAs (negative control group) were subjected to colony formation and wound healing assays to assess cell proliferation and migration in vitro. RT-PCR and western blot were used to assess TAGLN2 mRNA and protein expression; immunofluorescence staining was used to investigate the TAGLN2 impact on the cytoskeletal organization. Elevated TAGLN2 levels were observed in ovarian cancer compared with normal tissues, which was confirmed by IHC of a tissue microarray containing 65 ovarian tumor samples. TAGLN2 knockdown reduced cell proliferation and migration in vitro. Also, TAGLN2 was found to co-localize with F-actin; the knockdown of TAGLN2 impaired cytoskeletal organization, emphasizing its influence on cellular structures. In summary, TAGLN2, highly expressed in ovarian cancer, promotes migration and proliferation through cytoskeletal reorganization; thus, it may be a new therapeutic target for ovarian cancer.

Transgelin-2 (TAGLN2)是一种与肿瘤进展相关的肌动蛋白结合蛋白,特别是在胃和脑肿瘤中。然而,其在卵巢癌转移中的作用尚不完全清楚。本研究探讨TAGLN2在卵巢癌转移中的作用及其潜在机制。使用Oncomine, Human Protein Atlas (HPA)和免疫细胞化学(IHC)评估TAGLN2在卵巢癌和正常组织中的表达。TAGLN2敲低的Skov3细胞(使用特异性小干扰rna对TAGLN2同源的TAGLN2进行瞬时敲低),转染了重组sirna的Skov3细胞(阴性对照组)进行集落形成和伤口愈合实验,以评估细胞在体外的增殖和迁移。RT-PCR和western blot检测TAGLN2 mRNA和蛋白的表达;免疫荧光染色检测TAGLN2对细胞骨架组织的影响。与正常组织相比,卵巢癌组织中TAGLN2水平升高,这是通过包含65个卵巢肿瘤样本的组织微阵列的免疫组化证实的。TAGLN2敲低可降低细胞在体外的增殖和迁移。此外,TAGLN2被发现与F-actin共定位;敲低TAGLN2会破坏细胞骨架组织,强调其对细胞结构的影响。综上所述,TAGLN2在卵巢癌中高表达,通过细胞骨架重组促进迁移和增殖;因此,它可能成为卵巢癌新的治疗靶点。
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引用次数: 0
Telomerase Immunocytochemistry in Lymphocytes From Chronic Lymphocytic Leukemia. 慢性淋巴细胞白血病淋巴细胞端粒酶免疫细胞化学研究
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-05-15 DOI: 10.1097/PAI.0000000000001263
Mirna Sučić, Nives Ljubić, Dubravka Županić Krmek

Human telomerase reverse transcriptase (hTERT) is detectable in normal progenitor cells, tumor cells, and B-cell chronic lymphocytic leukemia (B-CLL) cells. hTERT expression, in addition to other prognostic factors, is reportedly associated with a poor prognosis in B-CLL. In this study, we aimed to analyze and compare hTERT immunoexpression in B-CLL bone marrow (BM) lymphocytes and benign pleural effusion lymphocytes. Standard cytologic analysis and immunocytochemical assessment of hTERT immunoexpression were performed in BM lymphocytes from 25 patients with B-CLL and pleural effusion lymphocytes from 18 patients with pneumonia and effusion-reactive lymphocytosis. The percentages and score values of hTERT nucleus (TN)-immunopositive BM lymphocytes in patients with CLL were significantly higher than those for reactive effusion lymphocytes with no or few TN-immunopositive lymphocytes. The appearance of TN immunopositivity in CLL lymphocytes showed mainly numerous prominent or large dots, and diffused TN immunopositivity was detected; in contrast, TN-immunopositive benign effusion lymphocytes had one or few immunopositive nuclear dots. Further investigations are needed to clarify whether lymphocyte TN immunopositivity can reveal subgroups of patients with CLL with a worse prognosis and whether there is a reliable difference in TN immunopositivity between CLL and benign effusion lymphocytes.

人类端粒酶逆转录酶(hTERT)可在正常祖细胞、肿瘤细胞和b细胞慢性淋巴细胞白血病(B-CLL)细胞中检测到。据报道,除了其他预后因素外,hTERT表达与B-CLL的不良预后有关。在本研究中,我们旨在分析和比较hTERT免疫在B-CLL骨髓(BM)淋巴细胞和良性胸腔积液淋巴细胞中的表达。对25例B-CLL患者的BM淋巴细胞和18例肺炎合并积液反应性淋巴细胞增多症患者的胸腔积液淋巴细胞进行标准细胞学分析和免疫细胞化学评价hTERT免疫表达。CLL患者hTERT核(TN)免疫阳性BM淋巴细胞的百分比和评分值明显高于无或很少有TN免疫阳性淋巴细胞的反应性积液淋巴细胞。CLL淋巴细胞TN免疫阳性主要表现为大量突出或大点,可检出弥漫性TN免疫阳性;tn免疫阳性的良性积液淋巴细胞有一个或几个免疫阳性核点。淋巴细胞TN免疫阳性是否可以揭示预后较差的CLL患者亚群,以及CLL与良性积液淋巴细胞之间TN免疫阳性是否存在可靠的差异,尚需进一步研究。
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引用次数: 0
Differential Expression Patterns of Bcl-2, D2-40, β-Catenin and E-Cadherin in Thymomas: Correlation with Clinical Stages and Subtypes. 胸腺瘤中Bcl-2、D2-40、β-Katenin和E-Cadherin的差异表达模式:与临床分期和亚型的相关性
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-05-13 DOI: 10.1097/PAI.0000000000001264
Busra Yaprak Bayrak, Aysegul U Kefeli, Cigdem Vural, Isa Cam, Ekin Y Calcali, Aykut Elicora, Huseyin F Sezer, Salih Topcu

Thymomas are rare mediastinal tumors exhibiting heterogeneous behavior. Although histologic subtypes and stages serve as prognostic factors, the molecular mechanisms of thymoma progression are unclear. Immunohistochemical markers like Bcl-2, D2-40, β-catenin, and E-cadherin offer insights into thymoma biology, but their predictive value for clinical outcomes remains uncertain. This study evaluated the expression of these markers across thymoma subtypes and stages, aiming to assess their prognostic significance. A retrospective analysis was conducted on 66 thymoma cases resected at a single center between 2005 and 2023. Immunohistochemical staining was performed to assess the expression of Bcl-2, D2-40, β-catenin, and E-cadherin. Clinicopathological characteristics were correlated with immunohistochemical findings using statistical analysis. Differential expression patterns of Bcl-2, D2-40, β-catenin, and E-cadherin were observed across thymoma subtypes and clinical stages. Bcl-2 displayed cytoplasmic positivity predominantly in type A and B thymomas, while E-cadherin showed membranous staining in type B thymomas and cytoplasmic staining in type A and AB thymomas. β-catenin demonstrated membranous staining in type B thymomas and cytoplasmic staining in type A and AB thymomas. D2-40 expression was localized to peripheral regions and invasive nests of thymomas, with higher expression in type B2 thymomas and early-stage tumors. Our findings indicate that immunohistochemical markers may provide valuable insights into thymoma biology and prognosis. Further validation in larger, multicenter cohorts is warranted to confirm the prognostic significance of these markers and their potential utility in guiding clinical management.

胸腺瘤是一种罕见的纵隔肿瘤,表现出异质性。虽然组织学亚型和分期可作为预后因素,但胸腺瘤进展的分子机制尚不清楚。免疫组织化学标记物如Bcl-2, D2-40, β-catenin和E-cadherin提供了胸腺瘤生物学的见解,但它们对临床结果的预测价值仍不确定。本研究评估了这些标志物在胸腺瘤亚型和分期中的表达,旨在评估其预后意义。回顾性分析2005年至2023年在同一中心切除的66例胸腺瘤病例。免疫组化染色检测Bcl-2、D2-40、β-catenin、E-cadherin的表达。临床病理特征与免疫组织化学结果进行统计学分析。Bcl-2、D2-40、β-catenin和E-cadherin在不同胸腺瘤亚型和临床分期的表达差异。Bcl-2在A型和B型胸腺瘤中以细胞质阳性为主,E-cadherin在B型胸腺瘤中呈膜性染色,在A型和AB型胸腺瘤中呈细胞质染色。β-连环蛋白在B型胸腺瘤中呈膜性染色,在A型和AB型胸腺瘤中呈细胞质染色。D2-40的表达局限于胸腺瘤的外周区和浸润性巢,在B2型胸腺瘤和早期肿瘤中表达较高。我们的研究结果表明,免疫组织化学标志物可能为胸腺瘤的生物学和预后提供有价值的见解。需要在更大的多中心队列中进一步验证,以确认这些标记物的预后意义及其在指导临床管理方面的潜在效用。
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引用次数: 0
P53 Puzzle: WWP1 and PARC Immunohistochemistry Illuminate New Pathways for Serous Ovarian Cancer. P53之谜:WWP1和PARC免疫组化揭示浆液性卵巢癌的新途径
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-04-18 DOI: 10.1097/PAI.0000000000001260
Elif Ozsagir, Mustafa E Ercin, Figen Celep Eyuboglu, Mehmet A Osmanagaoglu

High-grade serous carcinoma is categorized based on p53 mutation status. A relationship is known to exist between p53 mutations and p53 immunoexpression patterns, including overexpression, complete absence, cytoplasmic, and wild-type patterns. The ubiquitin ligases WWP1 and PARC, known to regulate p53 activation, are hypothesized to influence the pathogenesis of serous ovarian tumors. This retrospective study examined 7 low-grade serous carcinomas, 38 high-grade serous carcinomas, and 15 serous cystadenomas, with immunohistochemical analyses performed for WWP1, PARC, and p53. High-grade serous carcinoma cases were classified into wild-type, cytoplasmic, complete absence, or overexpression categories based on p53 immunohistochemistry. PARC and WWP1 expressions were compared across p53 categories and diagnoses. Results showed a statistically significant reduction in WWP1 and PARC expression in serous carcinomas, with the most pronounced loss observed in high-grade cases. Among morphologically classified high-grade carcinomas, 17 overexpression, 11 complete absence, 6 wild-type, and 4 cytoplasmic p53 cases were identified. A statistically significant relationship was found between PARC, WWP1, and p53 status. Higher expression levels of PARC and WWP1 were detected in p53 wild-type cases, whereas lower expression levels were associated with cases exhibiting p53 overexpression and complete absence. This study suggests that PARC and WWP1 play a role in the pathogenesis of high-grade serous ovarian carcinoma, potentially mediated by p53, making them promising targets for treatment and prognostic markers in serous ovarian cancer.

高级别浆液性癌是根据p53突变状态进行分类的。已知p53突变与p53免疫表达模式之间存在关系,包括过表达、完全缺失、细胞质和野生型模式。已知调节p53激活的泛素连接酶WWP1和PARC被假设影响浆液性卵巢肿瘤的发病机制。本回顾性研究检查了7例低级别浆液性癌、38例高级别浆液性癌和15例浆液性囊腺瘤,并对WWP1、PARC和p53进行了免疫组化分析。根据p53免疫组织化学将高级别浆液性癌分为野生型、细胞质型、完全缺失型和过表达型。PARC和WWP1的表达在不同的p53类型和诊断中比较。结果显示WWP1和PARC在浆液性癌中的表达降低具有统计学意义,在高级别病例中观察到的表达减少最为明显。形态学分类的高级别癌中,p53过表达17例,完全缺失11例,野生型6例,细胞质型4例。PARC、WWP1和p53状态之间存在统计学意义上的相关性。PARC和WWP1的高表达水平在p53野生型病例中被检测到,而低表达水平与p53过表达和完全缺失的病例相关。本研究提示PARC和WWP1在高级别浆液性卵巢癌的发病机制中发挥作用,可能由p53介导,使它们成为浆液性卵巢癌治疗和预后标志物的有希望的靶点。
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引用次数: 0
Coilin Is Not Expressed by Immunohistochemistry in Hodgkin and Diffuse Large B-cell Lymphomas. 免疫组织化学未发现Coilin在霍奇金淋巴瘤和弥漫性大b细胞淋巴瘤中表达。
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-07-01 Epub Date: 2025-04-21 DOI: 10.1097/PAI.0000000000001259
Georgia Karpathiou, Mousa Mobarki, Shaqraa Musawi, Alexandra Papoudou-Bai, Michel Péoc'h

Coilin is the signature protein of Cajal bodies (CBs), membrane-less organelles probably acting as sites for post-transcriptional RNA modification. Recent data suggest that coilin may be a regulator of the NF-kB activity, and Hodgkin lymphomas are hallmarks of neoplasms with NF-kB dysregulation. To the best of our knowledge, the immunohistochemical expression of coilin has been never investigated in Hodgkin lymphomas. We herein examined, by immunohistochemistry, full tissue sections of 58 classical Hodgkin lymphomas diagnosed in 31 male and 27 female patients and found that none of the cases expressed coilin. We compared these findings with Coilin expression in diffuse large B-cell lymphomas (DLBCL), where the marker was also negative. This finding represents the first data on coilin in lymphomas and prompts further studies to explore this downregulation.

Coilin是Cajal小体(CBs)的特征蛋白,无膜细胞器可能作为转录后RNA修饰的位点。最近的数据表明,coilin可能是NF-kB活性的调节因子,而霍奇金淋巴瘤是NF-kB失调肿瘤的标志。据我们所知,从未研究过在霍奇金淋巴瘤中肠溶蛋白的免疫组织化学表达。在此,我们通过免疫组织化学检查了58例典型霍奇金淋巴瘤的全组织切片,其中31例男性和27例女性,发现没有一例表达结肠蛋白。我们将这些发现与Coilin在弥漫性大b细胞淋巴瘤(DLBCL)中的表达进行了比较,后者也是阴性。这一发现代表了首个关于coilin在淋巴瘤中的数据,并促使进一步研究探索这种下调。
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引用次数: 0
The Prevention of Fatal Tauopathy in a Mouse Model of Alzheimer Disease by Blocking BCL2. 阻断BCL2预防阿尔茨海默病小鼠模型的致死性牛头病
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-05-01 Epub Date: 2025-02-11 DOI: 10.1097/PAI.0000000000001251
Gerard J Nuovo, Madison Rice, Nicola Zanesi, Dwitiya Sawant, Candice Crilly, Esmerina Tili

A major goal in Alzheimer disease (AD) research is the reduction of the abnormal tau burden. Using multispectral analyses on brain tissues from humans who died of AD it was documented that neurons with hyperphosphorylated tau protein accumulate many proteins of the BCL2 family, including those that block cell turnover (eg, BCL2, MCL1, BCLXL) and those that promote cell turnover (eg, NOXA, PUMA, BAK, BAX). A mouse model of AD with the humanized hyperphosphorylated tau protein was used to test the hypothesis that shifting this balance to a pro-cell turnover milieu would reduce the tau burden with concomitant clinical improvement. Here, we show that a mouse model of AD with death at 11 to 15 months due to CNS tauopathy had a marked reduction in the tau burden after treatment with the FDA-approved drug venetoclax, which blocks BCL2. The reduction of the number of target neurons positive for hyperphosphorylated tau protein after venetoclax treatment in the brain and spinal cord neurons was 94.5% as determined by immunohistochemistry and 98.1% as documented with the modified Bielchowsky stain. The venetoclax treatment began after documented neurofibrillary tangles (NFTs) were evident and there was a concomitant reduction in neuroinflammation. The treated mice were robust until sacrificed at 13 months as compared with the untreated mice that showed unequivocal evidence of brain and spinal cord damage both clinically and at autopsy. We conclude that otherwise inexorable abnormal tau protein deposition, even after initiation, can be prevented by a drug that blocks one anti-cell turnover protein abundant in the NFTs of human AD.

阿尔茨海默病(AD)研究的一个主要目标是减少异常tau负担。通过对死于阿尔茨海默病的人的脑组织进行多光谱分析,证明tau蛋白过度磷酸化的神经元积累了许多BCL2家族的蛋白质,包括那些阻止细胞更新的蛋白质(如BCL2, MCL1, BCLXL)和那些促进细胞更新的蛋白质(如NOXA, PUMA, BAK, BAX)。一个带有人源化高磷酸化tau蛋白的AD小鼠模型被用来验证这样一种假设,即将这种平衡转移到促细胞周转环境将减少tau负担,并伴随临床改善。在这里,我们发现,在使用fda批准的阻断BCL2的药物venetoclax治疗后,因中枢神经系统病变而在11至15个月死亡的AD小鼠模型中,tau负荷明显减少。免疫组化检测显示,venetoclax治疗后脑和脊髓神经元中过度磷酸化tau蛋白阳性的目标神经元数量减少94.5%,改良Bielchowsky染色显示减少98.1%。在记录的神经原纤维缠结(nft)明显并且伴随神经炎症减少后,venetoclax治疗开始。与未经治疗的小鼠相比,接受治疗的小鼠直到13个月时都很健壮,而未经治疗的小鼠在临床和尸检中都显示出明确的脑和脊髓损伤证据。我们的结论是,即使在发病后,不可避免的异常tau蛋白沉积也可以通过阻断人类AD的nft中丰富的一种抗细胞周转蛋白的药物来预防。
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引用次数: 0
Toward Accurate Deep Learning-Based Prediction of Ki67, ER, PR, and HER2 Status From H&E-Stained Breast Cancer Images. 从h&e染色乳腺癌图像中准确预测Ki67、ER、PR和HER2状态的深度学习
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-05-01 Epub Date: 2025-03-27 DOI: 10.1097/PAI.0000000000001258
Amir Akbarnejad, Nilanjan Ray, Penny J Barnes, Gilbert Bigras

Despite improvements in machine learning algorithms applied to digital pathology, only moderate accuracy, to predict molecular information from histology alone, has been achieved so far. One of the obstacles is the lack of large data sets to properly train machine learning models. We therefore built a data set of 185,538 breast cancer (BC) including hematoxylin and eosin (H&E) and associated immunohistochemistry (IHC) images of the proliferative marker Ki67, estrogen receptor (ER), progesterone receptor (PR), and the human epidermal growth factor receptor 2 (HER2). Optimal registration of H&E and IHC pairs was achieved. Ki67, ER, and PR IHC labels, to be predicted, were extracted from IHC assays using image analysis. These labels were ordinaly classified with incremental thresholds (cumulative logit models with balanced and partial proportional odds). HER2 label was determined as follows: positive if tumor IHC 3+ pattern is identified and otherwise negative. Cases with IHC equivocal score (2+) were excluded. A vision transformer (ViT)-based pipeline, trained with this data set, achieved prediction performance of 90% in terms of area under the curve (AUC) of the receiver operating characteristic (ROC) curves. ViT outperformed the weakly supervised clustering-constrained attention multiple instance learning (CLAM) which was developed to automatically identify subregions of high diagnostic value in whole slide. As a first step to "explain" artificial intelligence (AI), we evaluated the ability of both classifiers to localize these high diagnostic value subregions by inspecting their respective "attention" heat-maps. Despite high ViT AUC-ROC results, heat-maps do not obviously match areas of high diagnostic value subregions; it might however provide direction for future work to improve AI attention within whole slide images. Our proposed data set is publicly available.

尽管应用于数字病理学的机器学习算法有所改进,但到目前为止,仅从组织学中预测分子信息的准确性中等。其中一个障碍是缺乏大型数据集来正确训练机器学习模型。因此,我们建立了185,538例乳腺癌(BC)的数据集,包括苏木精和伊红(H&E)以及相关的增殖标志物Ki67、雌激素受体(ER)、孕激素受体(PR)和人表皮生长因子受体2 (HER2)的免疫组织化学(IHC)图像。实现了H&E和IHC对的最优配准。Ki67, ER和PR IHC标记,用于预测,从IHC检测中提取图像分析。这些标签通常使用增量阈值(具有平衡和部分比例赔率的累积logit模型)进行分类。HER2标记确定如下:如果确定肿瘤IHC 3+模式为阳性,否则为阴性。排除IHC评分模棱两可(2+)的病例。使用该数据集训练的基于视觉变压器(ViT)的管道,在受试者工作特征(ROC)曲线下面积(AUC)方面实现了90%的预测性能。ViT优于弱监督聚类约束注意多实例学习(CLAM),后者用于自动识别整个幻灯片中具有高诊断价值的子区域。作为“解释”人工智能(AI)的第一步,我们通过检查两个分类器各自的“注意力”热图来评估它们定位这些高诊断价值子区域的能力。尽管高ViT AUC-ROC结果,热图不明显匹配高诊断价值次区域的区域;然而,它可能为未来的工作提供方向,以提高人工智能在整个幻灯片图像中的注意力。我们建议的数据集是公开的。
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引用次数: 0
Genetic and Epigenetic Changes in Melanoma Progression: A TCGA-based Study. 黑色素瘤进展中的遗传和表观遗传变化:一项基于tcga的研究。
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-05-01 Epub Date: 2025-03-25 DOI: 10.1097/PAI.0000000000001257
Yasemin Cakir, Banu Lebe, M Hasan Toper, Sulen Sarioglu

We aimed to investigate molecular mechanisms affecting melanoma progression by comparing genetic/epigenetic features between melanomas of different Breslow thickness and stage using TCGA (The Cancer Genome Atlas) data. The TCGA, Firehose Legacy, melanoma data set was utilized on the cBioPortal website. The cases were compared in terms of mRNA expression and DNA methylation. Gene Ontology (GO) and KEGG pathways enrichment analysis were performed using the online WebGestalt tool. STRING and Cytoscape software were used to construct a protein-protein interaction network and identify hub genes. P and q <0.05, FDR< 0.05 were considered statistically significant. 1001 differentially expressed genes were identified between thin (≤1 mm) and thick (>1 mm) melanomas. Pathway analyses revealed that genes enriched in thin melanomas were associated with adaptive immune response, T-cell activation, immune response regulation, leukocyte, and cytokine-related pathways, whereas genes enriched in thick melanomas were related to epidermis development. Ten hub genes were identified ( CD4, IFNG, PTPRC, CD8A, CTLA4, CD69, ICOS, CD27, CD28, CD19 ). All of these genes are involved in crucial immunological processes. Understanding the complex changes in melanoma progression is essential for accurate diagnosis and prediction of prognosis. Our results may shed light on subsequent studies to identify the steps in melanoma progression.

我们的目的是利用TCGA(癌症基因组图谱)数据比较不同布瑞斯洛厚度和分期的黑色素瘤的遗传/表观遗传学特征,从而研究影响黑色素瘤进展的分子机制。cBioPortal 网站利用了 TCGA 的 Firehose Legacy 黑色素瘤数据集。病例在 mRNA 表达和 DNA 甲基化方面进行了比较。利用在线 WebGestalt 工具进行了基因本体(GO)和 KEGG 通路富集分析。使用 STRING 和 Cytoscape 软件构建了蛋白质-蛋白质相互作用网络,并确定了枢纽基因。结果表明,黑色素瘤(P 和 q1 mm)中的黑色素瘤基因含量较高。通路分析表明,薄黑色素瘤中富集的基因与适应性免疫反应、T细胞活化、免疫反应调节、白细胞和细胞因子相关通路有关,而厚黑色素瘤中富集的基因与表皮发育有关。研究发现了十个中心基因(CD4、IFNG、PTPRC、CD8A、CTLA4、CD69、ICOS、CD27、CD28、CD19)。所有这些基因都参与了关键的免疫过程。了解黑色素瘤进展过程中的复杂变化对于准确诊断和预测预后至关重要。我们的研究结果可能有助于后续研究确定黑色素瘤进展的步骤。
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引用次数: 0
Classifying Pulmonary and Urinary High-grade Neuroendocrine Carcinoma by CK7 Immunohistochemistry: Erratum. 用CK7免疫组织化学对肺和泌尿高级神经内分泌癌进行分类:勘误。
IF 1.3 4区 医学 Q3 ANATOMY & MORPHOLOGY Pub Date : 2025-05-01 Epub Date: 2025-03-28 DOI: 10.1097/PAI.0000000000001255
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引用次数: 0
期刊
Applied Immunohistochemistry & Molecular Morphology
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