Zoological Studies最新文献

The Merbok River (north-west of Peninsular Malaysia) is a mangrove estuary that provides habitat for over 100 species of fish, which are economically and ecologically important. Threats such as habitat loss and overfishing are becoming a great concern for fisheries conservation and management. The identification of larval fish in this estuarine system is important to complement information on the adults. This is because the data could inform the spawning behaviour, reproductive biology, selection of nursery grounds and migration route of fish. Such information is invaluable for fisheries and aquatic environmental monitoring, and thus for their conservation and management. However, identifying fish larvae is a challenging task based only on morphology and even traditional DNA barcoding. To address this, DNA metabarcoding was utilised to detect the diversity of fish in the Merbok River. To complete the study, the fish larvae were collected at six sampling sites of the river. The extracted larval DNA was amplified for the Cytochrome Oxidase subunit 1 (COI) and 12S ribosomal RNA (12S rRNA) genes based on the metabarcoding approach using shotgun sequencing on the next-generation sequencing (NGS) Illumina MiSeq platform. Eighty-nine species from 65 genera and 41 families were detected, with Oryzias javanicus, Oryzias dancena, Lutjanus argentimaculatus and Lutjanus malabaricus among the most common species. The lower diversity observed from previous morphological studies is suggested to be mainly due to seasonal variation over the sampling period between the two methods and limited 12S rRNA sequences in current databases. The metabarcode data and a validation Sanger sequencing step using 15 species-specific primer pairs detected three species in common: Oryzias javanicus, Decapterus maruadsi and Pennahia macrocephalus. Several discrepancies observed between the two molecular approaches could be attributed to contaminants during sampling and DNA extraction, which could mask the presence of target species, especially when DNA from the contaminants is more abundant than the target organisms. In conclusion, this rapid and cost-effective identification method using DNA metabarcoding allowed the detection of numerous fish species from bulk larval samples in the Merbok River. This method can be applied to other sites and other organisms of interest.

Taiwan lies at the transitional zone between the East Palaearctic and Oriental regions, which translates into both Palaearctic and Indomalayan taxa being present on the island. Furthermore, large habitat heterogeneity and high mountains contributed to the rise of conditions favouring allopatric speciation and the emergence of endemic species. The tardigrade fauna of Taiwan is poorly studied, and the aim of this contribution is to provide new data on the members of the family Echiniscidae, the largest limno-terrestrial group of the class Heterotardigrada, found at high elevations in central Taiwan. We report 11 species grouped in 5 genera: Claxtonia (1 species), Echiniscus (3 species), Hypechiniscus (1 species), Nebularmis (2 species), and Pseudechiniscus (4 species). All are new to Taiwan, including 5 species that are new to science, 4 or which are described herein by means of integrative taxonomy: Hypechiniscus crassus sp. nov. (the exarmatus morphogroup), Pseudechiniscus (Meridioniscus) dreyeri sp. nov., Pseudechiniscus (Pseudechiniscus) formosus sp. nov., and Pseudechiniscus (Pseudechiniscus) totoro sp. nov. The new findings also help to clarify the description of Echiniscus clevelandi Beasley, 1999, and supplement the phylogenies of the Echiniscus virginicus complex and of the genera Hypechiniscus, Nebularmis and Pseudechiniscus.

Habitat loss and fragmentation have a significant negative effect on amphibian species, particularly those with specialized habitat requirements. The endangered farmland green treefrog (Zhangixalus arvalis) primarily inhabits woodlands of agricultural landscapes in central Taiwan. Recently, due to increased demands for pineapple products, many woodlands, particularly bamboo plantations, were converted to pineapple fields. This study aimed to quantify the effect of habitat loss and fragmentation on Z. arvalis due to changes in land cover in an agricultural landscape. The study area contained 34,243 50 m × 50 m grids. In 2006 and 2014-2015, we used acoustic surveys to survey the occurrence of Z. arvalis in each grid. We obtained satellite images of the study area for 2006 and 2014, and we assigned the land-cover type of each grid to one of the following six types: woodland, brushland, cropland, bareland, manmade structures and water body. We examined whether Z. arvalis preferred a certain land-cover type by comparing the proportion of cover types available and the proportion of cover types used by the frogs. Furthermore, we used occurrence records for 2006 and 2014-2015 and applied the Maximum Entropy Model to predict suitable habitat for the respective years. We mapped the loss of suitable habitat and used six indices to quantify habitat fragmentation within the 8 years. We also tested the prediction that the occupancy rate of Z. arvalis in different-sized habitat patches was a function of patch size. Zhangixalus arvalis exhibited a strong preference for woodland, but avoided cropland and manmade structures. From 2006 to 2014-2015, the suitable habitat decreased 4.1%, and all six indices showed an increase in habitat fragmentation. The occupancy rate of different-sized woodland patches was positively correlated with patch size. Mapping suitable habitat and identifying the potential gaps in functional habitat connectivity can be used to guide effective measures for conserving Z. arvalis.

Water availability is one of the most important factors for terrestrial life. Terrestrial habitats may periodically become dry, which can be overcome by an organism's capability to undergo anhydrobiosis. In animals, this phenomenon has been reported for invertebrates, with tardigrades being the best-known. However, different tardigrade species appear to significantly differ in their anhydrobiotic abilities. While several studies have addressed this issue, established experimental protocols for tardigrade dehydration differ both within and among species, leading to ambiguous results. Therefore, we apply unified conditions to estimate intra-and interspecies differences in anhydrobiosis ability reflected by the return to active life. We analysed Milnesium inceptum and Ramazzottius subanomalus representing predatory and herbivorous species, respectively, and often co-occur in the same habitat. The results indicated that the carnivorous Mil. inceptum displays better anhydrobiosis survivability than the herbivorous Ram. subanomalus. This tendency to some degree coincides with the time of "waking up" since Mil. inceptum showed first movements and full activity of any first individual later than Ram. subanomalus. The movements of all individuals were however observed to be faster for Mil. inceptum. Differences between the experimental groups varying in anhydrobiosis length were also observed: the longer tun state duration, the more time was necessary to return to activity.

Morphological descriptions of phyllosoma larvae are essential for correct species identification and investigating the spatiotemporal distribution and recruitment process of spiny and slipper lobsters. Species identification of the phyllosoma larvae in the Scyllarinae subfamily is particularly difficult because of the morphological similarities among species and the scarcity of morphological information describing correct species identity. We extracted mid-to final-stage (V to VIII) phyllosoma larvae (n = 12) belonging to the subfamily Scyllarinae from several plankton samples collected in the Pacific and then performed molecular species identification using mitochondrial DNA COI and 16S rDNA sequence analyses. Three larvae collected around the Ryukyu Archipelago were identified as Chelarctus aureus (stage VI to VIII), and four collected around the Ryukyu Archipelago and Ogasawara Islands were identified as C. virgosus (V to VIII). One larva (V) collected in the central South Pacific was determined to be a subspecies of C. crosnieri. DNA barcodes could not be made for the remaining four larvae (V to VIII) collected around the Ryukyu Archipelago (designated by ?Chelarctus sp-1). Based on the morphological characteristics of the C. virgosus phyllosoma described in this study and the adult distributions reported to date, C. cultrifer phyllosomas previously reported in Japanese and Taiwanese waters are likely to be C. virgosus. This paper also presents a set of diagnostic morphological characteristics that can be used to discriminate among these four species of Chelarctus and from other genera in the subfamily Scyllarinae.

Development from abandoned land to farmland after vegetation reestablishment for reclamation is an important salinization rehabilitation process in dryland ecosystems. While subsequent soil abiotic changes have been reported, few studies have focused on how reclamation affects the soil biota. Understanding the response of soil biota to reclamation is useful for evaluating the effect of agricultural management. We investigated soil physiochemical properties, the composition and structure of nematode communities, and nematode metabolic footprints in control and reclaimed farmland. The results showed that soil properties were significantly altered by reclamation. In particular, reclamation significantly increased pH, organic carbon, total nitrogen, and microbial biomass carbon. Conversely, electrical conductivity was significantly decreased. Shannon and Simpson indices were affected by reclamation. Reclamation significantly increased the Shannon index in the 10-20 cm soil layer. Reclamation significantly increased the Simpson index in the 0-10 cm soil layer, while the opposite was observed in the 10-20 cm soil layer. High basal index and fungal-based channel were found in the control. Total nematode abundance increased due to reclamation, which included fungivores, herbivores, and omnivores-predators. More nematodes could store more biomass carbon in the reclaimed farmland. Reclamation had an effect on the structure and function of soil food web, and increased the metabolic footprints of various trophic groups of nematodes. Nematode faunal analysis revealed that exogenous substances input led to the high level of communities structure, and the soil food web matured in the reclaimed farmland. The nematode communities were affected by reclamation. Furthermore, pH, EC, SOC, TN, and MBC were key driving factors affecting the nematode communities. Therefore, reclamation could effectively enhance the structure and function of soil food web through bottom-up effects in the cotton fields in Xinjiang, China.

Bacteria are known to have explicit roles within the microbiomes of host tissues, therefore examining these communities may prove useful in assessing host health and responses to environmental change. The present study contributes to the emerging, yet understudied, field of microbiome research in elasmobranchs. We provide a screening of the culturable bacteria communities found on multiple tissue sites on the body surface of blacktip (Carcharhinus limbatus), bull (Carcharhinus leucas), and tiger (Galeocerdo cuvier) sharks near Miami, Florida. Tissue sites include mouth, gills, skin, and any visible wounds. The study adds to our understanding of the diversity of bacteria present on sharks in comparison to their natural environment. We also compare bacterial groups found within wounds in shark skin to healthy tissue sites on the same individual. Results indicate that wounds on an individual may allow for opportunistic bacteria to invade or overgrow where they would not normally be found, which may have potential health consequences for sharks that become wounded due to fishing practices. Identified bacteria belonged to the Actinobacteria, Firmicutes, and Proteobacteria phyla, known to be prominent bacterial groups associated with marine organisms. Results indicate shark species-specific differences in bacterial communities, including the presence of bacteria belonging to Planococcaceae exclusively on the skin of tiger sharks. To our knowledge, this is the first report of this family in any elasmobranch. While most tissue sites displayed commensal bacteria identified in similar studies, known pathogens belonging to Vibrionaceae and Staphylococcaceae were identified in the wounds of blacktip and bull sharks. Some bacteria may be normal residents, but the loss of protective dermal denticles due to a wound may allow colonization by pathogens. Continued research is needed to explore microbial communities associated with sharks and their influence on host health.

Algal reefs are one of the world's rare and poorly understood ecosystems. They are mainly distributed in the Mediterranean Sea, but one notable exception-an intertidal algal reef ecosystem in northwestern Taiwan-stretches for 27 km along the coast of Taoyuan, making it probably the largest algal reef coast found in shallow water. Despite the reef's rarity and striking characteristics, the coastal land that it is part of has undergone a series of developments and is now surrounded by industrial parks. Brachyuran crabs are one of the most abundant and visible groups of organisms in the intertidal zone. In the present study, we investigated the brachyuran crab community in this reef to provide a more detailed record of brachyuran crab species compositions in this intertidal algal reef ecosystem and illustrate the characteristics of this understudied ecosystem by comparing its species diversity and abundance with three natural variables- sampling time, tidal level, and season-in a wildlife refuge and north of the refuge. Two methods were used in the study: a qualitative method (to determine the species richness) and a quantitative method (to estimate the population density). We identified a total of 52 brachyuran species from 13 families in the habitats. The highest species richness was found in Datan G2, north of the wildlife refuge. The crab species composition in this algal reef is different from its compositions in coral and rocky reefs. Our analysis indicated that the species abundance is affected by multiple factors, and a single investigation is not enough to reflect the true population density of brachyuran crabs on this reef. In addition, we found that the sites outside the wildlife refuge were in much better condition than those in the wildlife refuge, and should therefore be included in the wildlife refuge. In particular, Datan, located north of the wildlife refuge, had the highest species richness, and the area's species composition was different from that of the nearby wildlife refuge. Thus, we strongly recommend that a) the Datan area be protected to maintain this high crab diversity and b) further research be performed to better understand brachyuran crab biology in the intertidal algal reef ecosystem.

A new species of intertidal limpet was identified from Yonaguni Island, Japan and southern Taiwan in the present study and described as Eoacmaea nivea n. sp. It was previously reported by different authors as Cellana mauritiana, or as Acmaeid sp. in Taiwan, and as Patelloida sp. in Yonaguni Island, Japan. Based on detailed morphological observations and molecular analyses (COI), E. nivea n. sp. is distinguished from other Eoacmaea species. Eoacmaea nivea n. sp. is presently known from southern Taiwan, and a population on Yonaguni Island, Japan that is very limited. The present study reports a total 11 species of patellogastropod limpet species in Taiwan. The seven species-Cellana grata, Cellana toreuma, Nipponacmea nigrans, Nipponacmea fuscoviridis, Lottia dorsuosa, Lottia luchuana and Lottia tenuisculpta-were found in the intertidal on rocky shores along the north to northeastern shores of Taiwan. The five species-Cellana radiata, Lottia luchuana, Scutellastra flexuosa, Patelloida saccharina and E. nivea n. sp.-can be found mostly within depressions in limestone substrate in southeastern Taiwan. Of these, only Lottia luchuana is found throughout Taiwan, and overall has a tropical, not warm-temperate, distribution.

Banded langurs, Presbytis femoralis, are distributed in southern Peninsular Malaysia, i.e., Johor and its borders including Singapore. It has been estimated that there are only < 250 mature individuals of P. femoralis in Malaysia and Singapore, and the species is currently considered Critically Endangered. The dietary information of P. femoralis and even other closely related species has rarely been reported. This study, therefore, aimed to describe the species dietary habits and discuss interaction between their feeding behaviour and its surrounding. This study was conducted from February to November 2018, with 15 sampling days each month. We collected a total of 186 sighting hours, using a scan sampling method with 10-min intervals, on a five-langur focal group. We identified 29 species based on 47 items consumed by the banded langur, mostly young leaves (51%) followed by fruits (45%), and flowers (3.8%). The study group spent slightly more time consuming non-cultivated plants but relied on cultivated plants for the fruits. Over 75% of fruit feeding involved consuming cultivar plants; in most cases (73%), they ate only the pulp, not the seeds. Since the cultivated plants were planted in human settlement, there is an urgent need to implement conservation measures to untangle the human-langur conflicts-for instance, reforestation of a buffer region using non-cultivated plants. There is a potential to build upon our new findings with more detailed investigations, such as more extensive ecological factors influencing the dietary adaptation which would be necessary to support conservation efforts and management decisions of this species.