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Postnatal developmental dynamics of cell type specification genes in Brn3a/Pou4f1 Retinal Ganglion Cells. Brn3a/Pou4f1视网膜神经节细胞细胞类型特异性基因的出生后发育动态
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-29 DOI: 10.1186/s13064-018-0110-0
Vladimir Vladimirovich Muzyka, Matthew Brooks, Tudor Constantin Badea

Background: About 20-30 distinct Retinal Ganglion Cell (RGC) types transmit visual information from the retina to the brain. The developmental mechanisms by which RGCs are specified are still largely unknown. Brn3a is a member of the Brn3/Pou4f transcription factor family, which contains key regulators of RGC postmitotic specification. In particular, Brn3a ablation results in the loss of RGCs with small, thick and dense dendritic arbors ('midget-like' RGCs), and morphological changes in other RGC subpopulations. To identify downstream molecular mechanisms underlying Brn3a effects on RGC numbers and morphology, our group recently performed a RNA deep sequencing screen for Brn3a transcriptional targets in mouse RGCs and identified 180 candidate transcripts.

Methods: We now focus on a subset of 28 candidate genes encoding potential cell type determinant proteins. We validate and further define their retinal expression profile at five postnatal developmental time points between birth and adult stage, using in situ hybridization (ISH), RT-PCR and fluorescent immunodetection (IIF).

Results: We find that a majority of candidate genes are enriched in the ganglion cell layer during early stages of postnatal development, but dynamically change their expression profile. We also document transcript-specific expression differences for two example candidates, using RT-PCR and ISH. Brn3a dependency could be confirmed by ISH and IIF only for a fraction of our candidates.

Conclusions: Amongst our candidate Brn3a target genes, a majority demonstrated ganglion cell layer specificity, however only around two thirds showed Brn3a dependency. Some were previously implicated in RGC type specification, while others have known physiological functions in RGCs. Only three genes were found to be consistently regulated by Brn3a throughout postnatal retina development - Mapk10, Tusc5 and Cdh4.

背景:大约20-30种不同的视网膜神经节细胞(RGC)类型将视觉信息从视网膜传递到大脑。指定rgc的发育机制在很大程度上仍然是未知的。Brn3a是Brn3/Pou4f转录因子家族的成员,该家族包含RGC有丝分裂后规范的关键调节因子。特别是,Brn3a消融导致具有小、厚、密树突乔木的RGC(“小样”RGC)的丢失,以及其他RGC亚群的形态学改变。为了确定Brn3a对RGC数量和形态影响的下游分子机制,我们的团队最近对小鼠RGC中的Brn3a转录靶点进行了RNA深度测序筛选,并鉴定了180个候选转录物。方法:我们现在专注于28个候选基因的一个子集,编码潜在的细胞类型决定蛋白。我们使用原位杂交(ISH)、RT-PCR和荧光免疫检测(IIF)验证并进一步确定了它们在出生和成年阶段之间的五个出生后发育时间点的视网膜表达谱。结果:我们发现大多数候选基因在出生后发育早期在神经节细胞层富集,但动态改变其表达谱。我们还使用RT-PCR和ISH记录了两个候选样本的转录特异性表达差异。Brn3a依赖性只能通过ISH和IIF在小部分候选患者中得到证实。结论:在我们的候选Brn3a靶基因中,大多数表现出神经节细胞层特异性,但只有约三分之二表现出Brn3a依赖性。其中一些先前与RGC类型规范有关,而另一些在RGC中具有已知的生理功能。在整个出生后视网膜发育过程中,只有三个基因被Brn3a持续调节——Mapk10、Tusc5和Cdh4。
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引用次数: 15
Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish. 对新型尾后脑基因的分析揭示了胚胎斑马鱼菱形丘 4 和 5/6 基因表达的不同调控逻辑。
IF 4 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-26 DOI: 10.1186/s13064-018-0112-y
Priyanjali Ghosh, Jennifer M Maurer, Charles G Sagerström

Background: Previous work aimed at understanding the gene regulatory networks (GRNs) governing caudal hindbrain formation identified morphogens such as Retinoic Acid (RA) and Fibroblast growth factors (FGFs), as well as transcription factors like hoxb1b, hoxb1a, hnf1ba, and valentino as being required for rhombomere (r) r4-r6 formation in zebrafish. Considering that the caudal hindbrain is relatively complex - for instance, unique sets of neurons are formed in each rhombomere segment - it is likely that additional essential genes remain to be identified and integrated into the caudal hindbrain GRN.

Methods: By taking advantage of gene expression data available in the Zebrafish Information Network (ZFIN), we identified 84 uncharacterized genes that are expressed in r4-r6. We selected a representative set of 22 genes and assayed their expression patterns in hoxb1b, hoxb1a, hnf1b, and valentino mutants with the goal of positioning them in the caudal hindbrain GRN. We also investigated the effects of RA and FGF on the expression of this gene set. To examine whether these genes are necessary for r4-r6 development, we analyzed germline mutants for six of the genes (gas6, gbx1, sall4, eglf6, celf2, and greb1l) for defects in hindbrain development.

Results: Our results reveal that r4 gene expression is unaffected by the individual loss of hoxb1b, hoxb1a or RA, but is under the combinatorial regulation of RA together with hoxb1b. In contrast, r5/r6 gene expression is dependent on RA, FGF, hnf1ba and valentino - as individual loss of these factors abolishes r5/r6 gene expression. Our analysis of six mutant lines did not reveal rhombomere or neuronal defects, but transcriptome analysis of one line (gas6 mutant) identified expression changes for genes involved in several developmental processes - suggesting that these genes may have subtle roles in hindbrain development.

Conclusion: We conclude that r4-r6 formation is relatively robust, such that very few genes are absolutely required for this process. However, there are mechanistic differences in r4 versus r5/r6, such that no single factor is required for r4 development while several genes are individually required for r5/r6 formation.

背景:以往旨在了解斑马鱼尾后脑形成的基因调控网络(GRNs)的研究发现,视黄酸(RA)和成纤维细胞生长因子(FGFs)等形态发生因子以及hoxb1b、hoxb1a、hnf1ba和valentino等转录因子是斑马鱼菱形节(r)r4-r6形成所必需的。考虑到尾后脑相对复杂--例如,每个菱形节段都形成了独特的神经元组--很可能还有更多的重要基因有待鉴定并整合到尾后脑GRN中:利用斑马鱼信息网络(ZFIN)中的基因表达数据,我们发现了84个在r4-r6中表达的未定性基因。我们选择了一组具有代表性的 22 个基因,并检测了它们在 hoxb1b、hoxb1a、hnf1b 和 valentino 突变体中的表达模式,目的是将它们定位在尾后脑 GRN 中。我们还研究了 RA 和 FGF 对这组基因表达的影响。为了研究这些基因是否为 r4-r6 发育所必需,我们分析了其中六个基因(gas6、gbx1、sall4、eglf6、cef2 和 greb1l)的种系突变体,以确定它们是否存在后脑发育缺陷:结果:我们的研究结果表明,r4基因的表达不受单独缺失hoxb1b、hoxb1a或RA的影响,但受RA和hoxb1b的联合调控。相反,r5/r6 基因的表达依赖于 RA、FGF、hnf1ba 和 valentino,因为这些因子的单独缺失会导致 r5/r6 基因表达的消失。我们对六个突变品系的分析没有发现菱形体或神经元缺陷,但对一个品系(gas6突变体)的转录组分析发现了涉及多个发育过程的基因的表达变化--这表明这些基因可能在后脑发育过程中起着微妙的作用:我们的结论是,r4-r6 的形成相对稳健,因此这一过程绝对需要的基因很少。然而,r4 与 r5/r6 在机理上存在差异,例如 r4 的发育不需要单一因素,而 r5/r6 的形成则需要多个基因。
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引用次数: 0
Strategies for assembling columns and layers in the Drosophila visual system. 果蝇视觉系统中列和层的组合策略
IF 4 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-07 DOI: 10.1186/s13064-018-0106-9
S Sean Millard, Matthew Y Pecot

A striking feature of neural circuit structure is the arrangement of neurons into regularly spaced ensembles (i.e. columns) and neural connections into parallel layers. These patterns of organization are thought to underlie precise synaptic connectivity and provide a basis for the parallel processing of information. In this article we discuss in detail specific findings that contribute to a framework for understanding how columns and layers are assembled in the Drosophila visual system, and discuss their broader implications.

神经回路结构的一个显著特点是将神经元排列成有规律间隔的集合体(即列),并将神经连接排列成平行层。这些组织模式被认为是精确突触连接的基础,并为并行处理信息提供了依据。在本文中,我们将详细讨论有助于理解果蝇视觉系统中列和层如何组合的框架的具体发现,并讨论其更广泛的意义。
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引用次数: 0
Assembly and maintenance of GABAergic and Glycinergic circuits in the mammalian nervous system. 哺乳动物神经系统gaba能和甘氨酸能回路的组装和维持。
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-07 DOI: 10.1186/s13064-018-0109-6
Clare R Gamlin, Wan-Qing Yu, Rachel O L Wong, Mrinalini Hoon

Inhibition in the central nervous systems (CNS) is mediated by two neurotransmitters: gamma-aminobutyric acid (GABA) and glycine. Inhibitory synapses are generally GABAergic or glycinergic, although there are synapses that co-release both neurotransmitter types. Compared to excitatory circuits, much less is known about the cellular and molecular mechanisms that regulate synaptic partner selection and wiring patterns of inhibitory circuits. Recent work, however, has begun to fill this gap in knowledge, providing deeper insight into whether GABAergic and glycinergic circuit assembly and maintenance rely on common or distinct mechanisms. Here we summarize and contrast the developmental mechanisms that regulate the selection of synaptic partners, and that promote the formation, refinement, maturation and maintenance of GABAergic and glycinergic synapses and their respective wiring patterns. We highlight how some parts of the CNS demonstrate developmental changes in the type of inhibitory transmitter or receptor composition at their inhibitory synapses. We also consider how perturbation of the development or maintenance of one type of inhibitory connection affects other inhibitory synapse types in the same circuit. Mechanistic insight into the development and maintenance of GABAergic and glycinergic inputs, and inputs that co-release both these neurotransmitters could help formulate comprehensive therapeutic strategies for treating disorders of synaptic inhibition.

中枢神经系统(CNS)的抑制是由两种神经递质介导的:γ -氨基丁酸(GABA)和甘氨酸。抑制性突触通常是gaba能或甘氨酸能,尽管也有突触共同释放这两种神经递质。与兴奋性神经回路相比,调控突触伴侣选择和抑制性神经回路线路模式的细胞和分子机制所知甚少。然而,最近的工作已经开始填补这一知识空白,提供了更深入的了解gaba能和甘氨酸能回路的组装和维护是否依赖于共同或独特的机制。在此,我们总结并比较了调节突触伴侣选择,促进gaba能突触和甘氨酸能突触及其各自的连线模式的形成、完善、成熟和维持的发育机制。我们强调中枢神经系统的某些部分如何在其抑制性突触中表现出抑制性递质或受体组成类型的发育变化。我们还考虑了一种类型的抑制性连接的发展或维持的扰动如何影响同一回路中的其他抑制性突触类型。深入了解gaba能和甘氨酸能输入的发展和维持机制,以及共同释放这两种神经递质的输入,有助于制定治疗突触抑制障碍的综合治疗策略。
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引用次数: 20
Homeostatic plasticity in neural development. 神经发育中的内稳态可塑性。
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-01 DOI: 10.1186/s13064-018-0105-x
Nai-Wen Tien, Daniel Kerschensteiner

Throughout life, neural circuits change their connectivity, especially during development, when neurons frequently extend and retract dendrites and axons, and form and eliminate synapses. In spite of their changing connectivity, neural circuits maintain relatively constant activity levels. Neural circuits achieve functional stability by homeostatic plasticity, which equipoises intrinsic excitability and synaptic strength, balances network excitation and inhibition, and coordinates changes in circuit connectivity. Here, we review how diverse mechanisms of homeostatic plasticity stabilize activity in developing neural circuits.

在整个生命过程中,神经回路会改变它们的连通性,尤其是在发育过程中,神经元会频繁地伸展和收缩树突和轴突,形成和消除突触。尽管它们的连通性在变化,但神经回路保持相对恒定的活动水平。神经回路通过内稳态可塑性实现功能稳定,内稳态可塑性平衡了神经网络的兴奋性和突触强度,平衡了神经网络的兴奋和抑制,协调了神经回路连通性的变化。在这里,我们回顾了动态平衡可塑性的不同机制如何稳定神经回路的活动。
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引用次数: 79
Development, functional organization, and evolution of vertebrate axial motor circuits. 脊椎动物轴向运动回路的发展、功能组织和进化。
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-06-01 DOI: 10.1186/s13064-018-0108-7
Kristen P D'Elia, Jeremy S Dasen

Neuronal control of muscles associated with the central body axis is an ancient and essential function of the nervous systems of most animal species. Throughout the course of vertebrate evolution, motor circuits dedicated to control of axial muscle have undergone significant changes in their roles within the motor system. In most fish species, axial circuits are critical for coordinating muscle activation sequences essential for locomotion and play important roles in postural correction. In tetrapods, axial circuits have evolved unique functions essential to terrestrial life, including maintaining spinal alignment and breathing. Despite the diverse roles of axial neural circuits in motor behaviors, the genetic programs underlying their assembly are poorly understood. In this review, we describe recent studies that have shed light on the development of axial motor circuits and compare and contrast the strategies used to wire these neural networks in aquatic and terrestrial vertebrate species.

神经控制与身体中轴相关的肌肉是大多数动物神经系统的一个古老而重要的功能。在整个脊椎动物进化过程中,致力于控制轴肌的运动回路在运动系统中的作用发生了重大变化。在大多数鱼类中,轴向回路对协调运动所需的肌肉激活序列至关重要,并在姿势纠正中发挥重要作用。在四足动物中,轴向回路进化出了陆地生命所必需的独特功能,包括保持脊柱对齐和呼吸。尽管轴向神经回路在运动行为中扮演着不同的角色,但人们对其组装背后的遗传程序知之甚少。在这篇综述中,我们描述了最近的研究,这些研究揭示了轴向运动电路的发展,并比较和对比了水生和陆地脊椎动物物种中用于连接这些神经网络的策略。
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引用次数: 26
Tcf7L2 is essential for neurogenesis in the developing mouse neocortex. Tcf7L2对于发育中的小鼠新皮层的神经发生至关重要。
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-05-11 DOI: 10.1186/s13064-018-0107-8
Olga Chodelkova, Jan Masek, Vladimir Korinek, Zbynek Kozmik, Ondrej Machon

Generation of neurons in the embryonic neocortex is a balanced process of proliferation and differentiation of neuronal progenitor cells. Canonical Wnt signalling is crucial for expansion of radial glial cells in the ventricular zone and for differentiation of intermediate progenitors in the subventricular zone. We detected abundant expression of two transcrtiption factors mediating canonical Wnt signalling, Tcf7L1 and Tcf7L2, in the ventricular zone of the embryonic neocortex. Conditional knock-out analysis showed that Tcf7L2, but not Tcf7L1, is the principal Wnt mediator important for maintenance of progenitor cell identity in the ventricular zone. In the absence of Tcf7L2, the Wnt activity is reduced, ventricular zone markers Pax6 and Sox2 are downregulated and the neuroepithelial structure is severed due to the loss of apical adherens junctions. This results in decreased proliferation of radial glial cells, the reduced number of intermediate progenitors in the subventricular zone and hypoplastic forebrain. Our data show that canonical Wnt signalling, which is essential for determining the neuroepithelial character of the neocortical ventricular zone, is mediated by Tcf7L2.

胚胎新皮层神经元的生成是一个神经元祖细胞增殖分化的平衡过程。典型Wnt信号对于脑室区放射状胶质细胞的扩张和脑室下区中间祖细胞的分化至关重要。我们检测到两种介导典型Wnt信号传导的转录因子Tcf7L1和Tcf7L2在胚胎新皮层的心室区大量表达。条件敲除分析表明,Tcf7L2而非Tcf7L1是维持心室区祖细胞身份的主要Wnt介质。在缺乏Tcf7L2的情况下,Wnt活性降低,心室区标记物Pax6和Sox2下调,神经上皮结构由于顶端粘附连接的丧失而被切断。这导致放射状胶质细胞增殖减少,室下区中间祖细胞数量减少和前脑发育不全。我们的数据表明,典型的Wnt信号是由Tcf7L2介导的,这对于确定新皮质心室区的神经上皮特征至关重要。
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引用次数: 28
Astrocytes, neurons, synapses: a tripartite view on cortical circuit development. 星形胶质细胞、神经元、突触:皮层回路发育的三方观点。
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-05-01 DOI: 10.1186/s13064-018-0104-y
Isabella Farhy-Tselnicker, Nicola J Allen

In the mammalian cerebral cortex neurons are arranged in specific layers and form connections both within the cortex and with other brain regions, thus forming a complex mesh of specialized synaptic connections comprising distinct circuits. The correct establishment of these connections during development is crucial for the proper function of the brain. Astrocytes, a major type of glial cell, are important regulators of synapse formation and function during development. While neurogenesis precedes astrogenesis in the cortex, neuronal synapses only begin to form after astrocytes have been generated, concurrent with neuronal branching and process elaboration. Here we provide a combined overview of the developmental processes of synapse and circuit formation in the rodent cortex, emphasizing the timeline of both neuronal and astrocytic development and maturation. We further discuss the role of astrocytes at the synapse, focusing on astrocyte-synapse contact and the role of synapse-related proteins in promoting formation of distinct cortical circuits.

在哺乳动物的大脑皮层中,神经元排列在特定的层中,并在皮层内和与其他大脑区域形成连接,从而形成由不同回路组成的特殊突触连接的复杂网络。在发育过程中,这些连接的正确建立对大脑的正常功能至关重要。星形胶质细胞是一种主要的胶质细胞,在发育过程中对突触的形成和功能起着重要的调节作用。虽然皮层的神经发生先于星形胶质细胞发生,但神经元突触只有在星形胶质细胞产生后才开始形成,与神经元分支和过程的细化同时发生。在这里,我们提供了在啮齿动物皮层突触和电路形成的发育过程的综合概述,强调了神经元和星形胶质细胞的发育和成熟的时间表。我们进一步讨论了星形胶质细胞在突触中的作用,重点关注星形胶质细胞-突触的接触以及突触相关蛋白在促进不同皮层回路形成中的作用。
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引用次数: 234
Neural circuits driving larval locomotion in Drosophila. 驱动果蝇幼虫运动的神经回路
IF 3.6 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-04-19 DOI: 10.1186/s13064-018-0103-z
Matthew Q Clark, Aref Arzan Zarin, Arnaldo Carreira-Rosario, Chris Q Doe

More than 30 years of studies into Drosophila melanogaster neurogenesis have revealed fundamental insights into our understanding of axon guidance mechanisms, neural differentiation, and early cell fate decisions. What is less understood is how a group of neurons from disparate anterior-posterior axial positions, lineages and developmental periods of neurogenesis coalesce to form a functional circuit. Using neurogenetic techniques developed in Drosophila it is now possible to study the neural substrates of behavior at single cell resolution. New mapping tools described in this review, allow researchers to chart neural connectivity to better understand how an anatomically simple organism performs complex behaviors.

对黑腹果蝇神经发生的 30 多年研究揭示了我们对轴突导向机制、神经分化和早期细胞命运决定的基本认识。但我们不太了解的是,一组来自不同前后轴位置、不同神经系和不同神经发生发育时期的神经元是如何凝聚成一个功能回路的。利用在果蝇中开发的神经遗传学技术,现在有可能以单细胞分辨率研究行为的神经基质。本综述介绍的新绘图工具使研究人员能够绘制神经连接图,从而更好地了解解剖学上简单的生物体是如何做出复杂行为的。
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引用次数: 0
Linking neuronal lineage and wiring specificity. 将神经元系谱与线路特异性联系起来
IF 4 3区 生物学 Q1 DEVELOPMENTAL BIOLOGY Pub Date : 2018-04-13 DOI: 10.1186/s13064-018-0102-0
Hongjie Li, S Andrew Shuster, Jiefu Li, Liqun Luo

Brain function requires precise neural circuit assembly during development. Establishing a functional circuit involves multiple coordinated steps ranging from neural cell fate specification to proper matching between pre- and post-synaptic partners. How neuronal lineage and birth timing influence wiring specificity remains an open question. Recent findings suggest that the relationships between lineage, birth timing, and wiring specificity vary in different neuronal circuits. In this review, we summarize our current understanding of the cellular, molecular, and developmental mechanisms linking neuronal lineage and birth timing to wiring specificity in a few specific systems in Drosophila and mice, and review different methods employed to explore these mechanisms.

大脑功能需要在发育过程中精确组装神经回路。功能回路的建立涉及多个协调步骤,从神经细胞命运的规范到突触前后伙伴的适当匹配。神经元系谱和出生时间如何影响布线特异性仍是一个未决问题。最近的研究结果表明,在不同的神经元回路中,系谱、出生时间和布线特异性之间的关系各不相同。在这篇综述中,我们总结了目前我们对果蝇和小鼠几个特定系统中神经元系谱和出生时间与布线特异性之间的细胞、分子和发育机制的理解,并回顾了探索这些机制所采用的不同方法。
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引用次数: 0
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Neural Development
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