首页 > 最新文献

Mechanisms of Development最新文献

英文 中文
The gene regulatory control of sea urchin gastrulation 海胆原肠形成的基因调控
IF 2.6 Q2 Medicine Pub Date : 2020-06-01 DOI: 10.1016/j.mod.2020.103599
Charles A. Ettensohn

The cell behaviors associated with gastrulation in sea urchins have been well described. More recently, considerable progress has been made in elucidating gene regulatory networks (GRNs) that underlie the specification of early embryonic territories in this experimental model. This review integrates information from these two avenues of work. I discuss the principal cell movements that take place during sea urchin gastrulation, with an emphasis on molecular effectors of the movements, and summarize our current understanding of the gene regulatory circuitry upstream of those effectors. A case is made that GRN biology can provide a causal explanation of gastrulation, although additional analysis is needed at several levels of biological organization in order to provide a deeper understanding of this complex morphogenetic process.

海胆与原肠胚形成相关的细胞行为已被很好地描述。最近,在阐明基因调控网络(grn)方面取得了相当大的进展,grn是该实验模型中早期胚胎领地规范的基础。本综述整合了来自这两种工作途径的信息。我讨论了在海胆原肠形成过程中发生的主要细胞运动,重点是运动的分子效应,并总结了我们目前对这些效应上游基因调控回路的理解。尽管需要在生物组织的几个层面上进行额外的分析,以便对这一复杂的形态发生过程有更深入的了解,但本文提出了GRN生物学可以为原肠胚形成提供因果解释的案例。
{"title":"The gene regulatory control of sea urchin gastrulation","authors":"Charles A. Ettensohn","doi":"10.1016/j.mod.2020.103599","DOIUrl":"10.1016/j.mod.2020.103599","url":null,"abstract":"<div><p>The cell behaviors associated with gastrulation in sea urchins have been well described. More recently, considerable progress has been made in elucidating gene regulatory networks (GRNs) that underlie the specification of early embryonic territories in this experimental model. This review integrates information from these two avenues of work. I discuss the principal cell movements that take place during sea urchin gastrulation, with an emphasis on molecular effectors of the movements, and summarize our current understanding of the gene regulatory circuitry upstream of those effectors. A case is made that GRN biology can provide a causal explanation of gastrulation, although additional analysis is needed at several levels of biological organization in order to provide a deeper understanding of this complex morphogenetic process.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"162 ","pages":"Article 103599"},"PeriodicalIF":2.6,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103599","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37695337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Simulations of sea urchin early development delineate the role of oriented cell division in the morula-to-blastula transition 海胆早期发育的模拟描述了定向细胞分裂在桑葚胚向囊胚过渡中的作用
IF 2.6 Q2 Medicine Pub Date : 2020-06-01 DOI: 10.1016/j.mod.2020.103606
Lawrence Bodenstein

The sea urchin morula to blastula transition has long been thought to require oriented cell divisions and blastomere adherence to the enveloping hyaline layer. In a computer simulation model, cell divisions constrained by a surface plane division rule are adequate to effect morphological transition. The hyaline membrane acts as an enhancer but is not essential. The model is consistent with the orientation of micromere divisions and the open blastulae of direct developing species. The surface plane division rule precedes overt epithelization of surface cells and acts to organize the developing epithelium. It is a universal feature of early metazoan development and simulations of non-echinoid cleavage patterns support its role throughout Metazoa. The surface plane division rule requires only local cues and cells need not reference global positional information or embryonic axes.

海胆桑葚胚向囊胚的转变长期以来被认为需要定向细胞分裂和囊胚粘附在包膜透明层上。在计算机模拟模型中,受表面分裂规则约束的细胞分裂足以影响形态转变。透明膜作为增强剂,但不是必需的。该模型与直接发育物种的微粒分裂方向和开放囊胚一致。表面分裂规律先于表面细胞的明显上皮形成,并组织发育中的上皮。它是后生动物早期发育的普遍特征,非棘刺类卵裂模式的模拟支持其在后生动物中的作用。平面划分规则只需要局部线索,细胞不需要参考全局位置信息或胚胎轴。
{"title":"Simulations of sea urchin early development delineate the role of oriented cell division in the morula-to-blastula transition","authors":"Lawrence Bodenstein","doi":"10.1016/j.mod.2020.103606","DOIUrl":"10.1016/j.mod.2020.103606","url":null,"abstract":"<div><p>The sea urchin morula to blastula transition has long been thought to require oriented cell divisions and blastomere adherence to the enveloping hyaline layer. In a computer simulation model, cell divisions constrained by a <em>surface plane division rule</em> are adequate to effect morphological transition. The hyaline membrane acts as an enhancer but is not essential. The model is consistent with the orientation of micromere divisions and the open blastulae of direct developing species. The surface plane division rule precedes overt epithelization of surface cells and acts to organize the developing epithelium. It is a universal feature of early metazoan development and simulations of non-echinoid cleavage patterns support its role throughout Metazoa. The surface plane division rule requires only local cues and cells need not reference global positional information or embryonic axes.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"162 ","pages":"Article 103606"},"PeriodicalIF":2.6,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103606","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37732574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
MicroRNA-1-3p enhances osteoblast differentiation of MC3T3-E1 cells by interacting with hypoxia-inducible factor 1 α inhibitor (HIF1AN) MicroRNA-1-3p通过与缺氧诱导因子1 α抑制剂(HIF1AN)相互作用促进MC3T3-E1细胞成骨分化
IF 2.6 Q2 Medicine Pub Date : 2020-06-01 DOI: 10.1016/j.mod.2020.103613
Long Zhou , Min Qiu , Lei Yang , Liyu Yang , Yiqi Zhang , Shuai Mu , Hanyi Song

Studies have proved that miRNAs participate in the regulation of osteoblast differentiation (OD), and abnormal expression of miRNAs is related with various states of OD. In this study, we investigated the role of miRNA-1-3p in OD using MC3T3-E1 cells. BMP2 is used to induce OD of MC3T3-E1 cells. MiRNA-1-3p mimics or miRNA-1-3p inhibitor was transfected to MC3T3-E1 cells with BMP2. The expression levels of miRNA-1-3p were determined by qRT-PCR. The expression of Runx2, OSX, OPN, and OCN was detected by Western blotting. ALP assay was performed to measure alkaline phosphatase activity. Calcium nodules were evaluated by alizarin red staining. Over-expression of hypoxia-inducible factor 1-alpha inhibitor (HIF1AN) was performed and miRNA-1-3p rescue experiments were carried out. Over-expression of miRNA-1-3p promoted osteogenic differentiations and calcifications, as demonstrated by increased ALP, calcification and osteogenic markers. Knock-down of miRNA-1-3p generated the opposite results. HIF1AN was identified to be directly targeted by miRNA-1-3p. Over-expression of HIF1AN suppressed OD and calcifications, and miRNA-1-3p reversed the effect. Our results demonstrated that miRNA-1-3p could enhance OD of MC3T3-E1 cells through interacting with HIF1AN, which might be employed as therapeutic applications for bone formation and regeneration.

研究证明,mirna参与成骨细胞分化(osteoblast differentiation, OD)的调控,mirna的异常表达与成骨细胞分化的多种状态有关。在本研究中,我们利用MC3T3-E1细胞研究了miRNA-1-3p在OD中的作用。用BMP2诱导MC3T3-E1细胞凋亡。用BMP2转染MiRNA-1-3p模拟物或MiRNA-1-3p抑制剂至MC3T3-E1细胞。采用qRT-PCR检测miRNA-1-3p的表达水平。Western blotting检测Runx2、OSX、OPN、OCN的表达。ALP法测定碱性磷酸酶活性。茜素红染色评价钙结节。过表达缺氧诱导因子1- α抑制剂(HIF1AN),并进行miRNA-1-3p抢救实验。miRNA-1-3p的过表达促进了成骨分化和钙化,这可以通过ALP、钙化和成骨标志物的增加来证明。miRNA-1-3p的敲除产生相反的结果。HIF1AN被鉴定为miRNA-1-3p的直接靶向。过表达HIF1AN可抑制OD和钙化,miRNA-1-3p可逆转这一作用。我们的研究结果表明,miRNA-1-3p可以通过与HIF1AN的相互作用增强MC3T3-E1细胞的OD,这可能在骨形成和再生的治疗中应用。
{"title":"MicroRNA-1-3p enhances osteoblast differentiation of MC3T3-E1 cells by interacting with hypoxia-inducible factor 1 α inhibitor (HIF1AN)","authors":"Long Zhou ,&nbsp;Min Qiu ,&nbsp;Lei Yang ,&nbsp;Liyu Yang ,&nbsp;Yiqi Zhang ,&nbsp;Shuai Mu ,&nbsp;Hanyi Song","doi":"10.1016/j.mod.2020.103613","DOIUrl":"10.1016/j.mod.2020.103613","url":null,"abstract":"<div><p>Studies have proved that miRNAs participate in the regulation of osteoblast differentiation (OD), and abnormal expression of miRNAs is related with various states of OD. In this study, we investigated the role of miRNA-1-3p in OD using MC3T3-E1 cells. BMP2 is used to induce OD of MC3T3-E1 cells. MiRNA-1-3p mimics or miRNA-1-3p inhibitor was transfected to MC3T3-E1 cells with BMP2. The expression levels of miRNA-1-3p were determined by qRT-PCR. The expression of Runx2, OSX, OPN, and OCN was detected by Western blotting. ALP assay was performed to measure alkaline phosphatase activity. Calcium nodules were evaluated by alizarin red staining. Over-expression of hypoxia-inducible factor 1-alpha inhibitor (HIF1AN) was performed and miRNA-1-3p rescue experiments were carried out. Over-expression of miRNA-1-3p promoted osteogenic differentiations and calcifications, as demonstrated by increased ALP, calcification and osteogenic markers. Knock-down of miRNA-1-3p generated the opposite results. HIF1AN was identified to be directly targeted by miRNA-1-3p. Over-expression of HIF1AN suppressed OD and calcifications, and miRNA-1-3p reversed the effect. Our results demonstrated that miRNA-1-3p could enhance OD of MC3T3-E1 cells through interacting with HIF1AN, which might be employed as therapeutic applications for bone formation and regeneration.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"162 ","pages":"Article 103613"},"PeriodicalIF":2.6,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103613","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37917184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Binary fission in Trichoplax is orthogonal to the subsequent division plane 盘虫的二元裂变与随后的分裂平面是正交的
IF 2.6 Q2 Medicine Pub Date : 2020-06-01 DOI: 10.1016/j.mod.2020.103608
Jorge Zuccolotto-Arellano, Rodrigo Cuervo-González

Asexual reproduction in Trichoplax occurs mainly by binary fission and occasionally by the budding of epithelial spheres called “swarmers”. The process that leads to binary fission and the mechanisms involved in this segregation are practically unknown. Trichoplax lacks a defined shape, presenting a constantly changing outline due to its continuous movements and body contractions. For this reason, and due to the absence of anatomical references, it has been classified as an asymmetric organism. Here, we report that a transient wound is formed in the marginal epithelium of the two new individuals produced by binary fission. By tracking the location of this epithelial wound, we can determine that successive dichotomous divisions are orthogonal to the previous division. We also found that LiCl paralyzes the cilia beating movement and body contractions and causes the placozoans to become circular in shape. This effect, as well as a stereotypic body folding behavior observed in detached placozoans and cell labeling experiments of the upper epithelium, indicate a cylindrical body symmetry for Placozoa.

毛原虫的无性生殖主要通过二元分裂进行,偶尔也通过被称为“蜂群”的上皮球的出芽进行。导致二元裂变的过程和这种分离所涉及的机制实际上是未知的。毛虫缺乏明确的形状,由于其不断运动和身体收缩,呈现出不断变化的轮廓。由于这个原因,并且由于缺乏解剖学参考,它被归类为不对称生物。在这里,我们报告了在二元裂变产生的两个新个体的边缘上皮中形成的短暂伤口。通过跟踪这个上皮伤口的位置,我们可以确定连续的二分类与之前的分裂是正交的。我们还发现LiCl使纤毛跳动运动和身体收缩麻痹,并使placozoan变成圆形。这种效应,以及在离体盘虫和上上皮细胞标记实验中观察到的刻板的身体折叠行为,表明盘虫的身体呈圆柱形对称。
{"title":"Binary fission in Trichoplax is orthogonal to the subsequent division plane","authors":"Jorge Zuccolotto-Arellano,&nbsp;Rodrigo Cuervo-González","doi":"10.1016/j.mod.2020.103608","DOIUrl":"10.1016/j.mod.2020.103608","url":null,"abstract":"<div><p>Asexual reproduction in <em>Trichoplax</em> occurs mainly by binary fission and occasionally by the budding of epithelial spheres called “swarmers”. The process that leads to binary fission and the mechanisms involved in this segregation are practically unknown. <em>Trichoplax</em> lacks a defined shape, presenting a constantly changing outline due to its continuous movements and body contractions. For this reason, and due to the absence of anatomical references, it has been classified as an asymmetric organism. Here, we report that a transient wound is formed in the marginal epithelium of the two new individuals produced by binary fission. By tracking the location of this epithelial wound, we can determine that successive dichotomous divisions are orthogonal to the previous division. We also found that LiCl paralyzes the cilia beating movement and body contractions and causes the placozoans to become circular in shape. This effect, as well as a stereotypic body folding behavior observed in detached placozoans and cell labeling experiments of the upper epithelium, indicate a cylindrical body symmetry for Placozoa.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"162 ","pages":"Article 103608"},"PeriodicalIF":2.6,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103608","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37917185","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Protein kinases: master regulators of neuritogenesis and therapeutic targets for axon regeneration. 蛋白激酶:神经发生的主调节器和轴突再生的治疗靶点。
IF 8 Q2 Medicine Pub Date : 2020-04-01 Epub Date: 2019-10-28 DOI: 10.1007/s00018-019-03336-6
Sarah A Bennison, Sara M Blazejewski, Trevor H Smith, Kazuhito Toyo-Oka

Proper neurite formation is essential for appropriate neuronal morphology to develop and defects at this early foundational stage have serious implications for overall neuronal function. Neuritogenesis is tightly regulated by various signaling mechanisms that control the timing and placement of neurite initiation, as well as the various processes necessary for neurite elongation to occur. Kinases are integral components of these regulatory pathways that control the activation and inactivation of their targets. This review provides a comprehensive summary of the kinases that are notably involved in regulating neurite formation, which is a complex process that involves cytoskeletal rearrangements, addition of plasma membrane to increase neuronal surface area, coupling of cytoskeleton/plasma membrane, metabolic regulation, and regulation of neuronal differentiation. Since kinases are key regulators of these functions during neuromorphogenesis, they have high potential for use as therapeutic targets for axon regeneration after injury or disease where neurite formation is disrupted.

神经元形态的形成离不开适当的神经元形成,而这一早期基础阶段的缺陷会对神经元的整体功能产生严重影响。神经元发生受到各种信号机制的严格调控,这些机制控制着神经元启动的时间和位置,以及神经元伸长所需的各种过程。激酶是这些调控途径中不可或缺的组成部分,可控制其靶点的激活和失活。神经元形成是一个复杂的过程,涉及细胞骨架重排、增加质膜以增加神经元表面积、细胞骨架/质膜耦合、代谢调节和神经元分化调节。由于激酶是神经形态发生过程中这些功能的关键调控因子,因此它们极有可能成为治疗靶点,用于神经元损伤或疾病后轴突再生(神经元形成受到破坏)。
{"title":"Protein kinases: master regulators of neuritogenesis and therapeutic targets for axon regeneration.","authors":"Sarah A Bennison, Sara M Blazejewski, Trevor H Smith, Kazuhito Toyo-Oka","doi":"10.1007/s00018-019-03336-6","DOIUrl":"10.1007/s00018-019-03336-6","url":null,"abstract":"<p><p>Proper neurite formation is essential for appropriate neuronal morphology to develop and defects at this early foundational stage have serious implications for overall neuronal function. Neuritogenesis is tightly regulated by various signaling mechanisms that control the timing and placement of neurite initiation, as well as the various processes necessary for neurite elongation to occur. Kinases are integral components of these regulatory pathways that control the activation and inactivation of their targets. This review provides a comprehensive summary of the kinases that are notably involved in regulating neurite formation, which is a complex process that involves cytoskeletal rearrangements, addition of plasma membrane to increase neuronal surface area, coupling of cytoskeleton/plasma membrane, metabolic regulation, and regulation of neuronal differentiation. Since kinases are key regulators of these functions during neuromorphogenesis, they have high potential for use as therapeutic targets for axon regeneration after injury or disease where neurite formation is disrupted.</p>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"12 1","pages":"1511-1530"},"PeriodicalIF":8.0,"publicationDate":"2020-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7166181/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75498044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Disconnect between the developing eye and craniofacial prominences in the avian embryo 在禽类胚胎中,发育中的眼睛和颅面突起之间的脱节
IF 2.6 Q2 Medicine Pub Date : 2020-03-01 DOI: 10.1016/j.mod.2020.103596
Jamil Jomaa , Jessica Martínez-Vargas , Shadya Essaili , Nida Haider , John Abramyan

In the amniote embryo, the upper jaw and nasal cavities form through coordinated outgrowth and fusion of craniofacial prominences. Adjacent to the embryonic prominences are the developing eyes, which abut the maxillary and lateral nasal prominences. The embryos of extant sauropsids (birds and nonavian reptiles) develop particularly large eyes in comparison to mammals, leading researchers to propose that the developing eye may facilitate outgrowth of prominences towards the midline in order to aid prominence fusion. To test this hypothesis, we performed unilateral and bilateral ablation of the developing eyes in chicken embryos, with the aim of evaluating subsequent prominence formation and fusion. Our analyses revealed minor interaction between the developing craniofacial prominences and the eyes, inconsequential to the fusion of the upper beak. At later developmental stages, the skull exhibited only localized effects from missing eyes, while geometric morphometrics revealed minimal effect on overall shape of the upper jaw when it develops without eyes. Our results indicate that the substantial size of the developing eyes in the chicken embryo exert little influence over the fusion of the craniofacial prominences, despite their effect on the size and shape of maxillary prominences and components of the skull.

在羊膜胚胎中,上颌和鼻腔是通过颅面突起的协调生长和融合形成的。靠近胚胎突起的是发育中的眼睛,它围绕着上颌突起和侧鼻突起。与哺乳动物相比,现存的蜥脚类动物(鸟类和非鸟类爬行动物)的胚胎发育出了特别大的眼睛,这使得研究人员提出,发育中的眼睛可能会促进突出物向中线的生长,以帮助突出物融合。为了验证这一假设,我们对鸡胚胎中正在发育的眼睛进行了单侧和双侧消融,目的是评估随后的突出形成和融合。我们的分析显示,发育中的颅面突起和眼睛之间的相互作用较小,与上喙的融合无关。在后来的发育阶段,头骨只表现出局部的影响,而几何形态计量学显示,当没有眼睛时,对上颌整体形状的影响很小。我们的研究结果表明,鸡胚胎中发育中的眼睛的大小对颅面突起的融合影响很小,尽管它们对上颌突起的大小和形状以及头骨的组成有影响。
{"title":"Disconnect between the developing eye and craniofacial prominences in the avian embryo","authors":"Jamil Jomaa ,&nbsp;Jessica Martínez-Vargas ,&nbsp;Shadya Essaili ,&nbsp;Nida Haider ,&nbsp;John Abramyan","doi":"10.1016/j.mod.2020.103596","DOIUrl":"10.1016/j.mod.2020.103596","url":null,"abstract":"<div><p>In the amniote embryo, the upper jaw and nasal cavities form through coordinated outgrowth and fusion of craniofacial prominences. Adjacent to the embryonic prominences are the developing eyes, which abut the maxillary and lateral nasal prominences. The embryos of extant sauropsids (birds and nonavian reptiles) develop particularly large eyes in comparison to mammals, leading researchers to propose that the developing eye may facilitate outgrowth of prominences towards the midline in order to aid prominence fusion. To test this hypothesis, we performed unilateral and bilateral ablation of the developing eyes in chicken embryos, with the aim of evaluating subsequent prominence formation and fusion. Our analyses revealed minor interaction between the developing craniofacial prominences and the eyes, inconsequential to the fusion of the upper beak. At later developmental stages, the skull exhibited only localized effects from missing eyes, while geometric morphometrics revealed minimal effect on overall shape of the upper jaw when it develops without eyes. Our results indicate that the substantial size of the developing eyes in the chicken embryo exert little influence over the fusion of the craniofacial prominences, despite their effect on the size and shape of maxillary prominences and components of the skull.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"161 ","pages":"Article 103596"},"PeriodicalIF":2.6,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103596","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37631525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptome analysis of axolotl oropharyngeal explants during taste bud differentiation stages 美西螈味蕾分化阶段口咽外植体转录组分析
IF 2.6 Q2 Medicine Pub Date : 2020-03-01 DOI: 10.1016/j.mod.2020.103597
Priya Kohli , Lauren Marazzi , Deborah Eastman

The Mexican salamander, Ambystoma mexicanum (Axolotl), is an excellent vertebrate model system to understand development and regeneration. Studies in axolotl embryos have provided important insights into taste bud development. Taste bud specification and determination occur in the oropharyngeal endoderm of axolotl embryos during gastrulation and neurulation, respectively, whereas taste bud innervation and taste cell differentiation occur later in development. Axolotl embryos are amenable to microsurgery, and tissue explants develop readily in vitro. We performed RNA-seq analysis to investigate the differential expression of genes in oropharyngeal explants at several stages of taste cell differentiation. Since the axolotl genome has only recently been sequenced, we used a Trinity pipeline to perform de novo assembly of sequencing reads. Linear models for RNA-seq data were used to identify differentially expressed genes. We found 1234 unique genes differentially expressed during taste cell differentiation stages. We validated four of these genes using RTqPCR and performed GO functional analysis. The differential expression of these genes suggests that they may play a role in taste cell differentiation in axolotls.

墨西哥蝾螈,Ambystoma mexicanum (Axolotl),是一个很好的脊椎动物模型系统来了解发育和再生。对美西螈胚胎的研究为味蕾的发育提供了重要的见解。在原肠胚期和神经期,美西螈胚胎的口咽内胚层分别发生味蕾的形成和决定,而味蕾的神经支配和味觉细胞的分化则发生在发育的后期。蝾螈胚胎适合显微手术,组织外植体在体外很容易发育。我们通过RNA-seq分析来研究味觉细胞分化不同阶段口咽外植体中基因的差异表达。由于美西螈基因组最近才被测序,我们使用了Trinity管道来进行测序reads的从头组装。使用RNA-seq数据的线性模型来鉴定差异表达基因。我们发现了1234个独特的基因在味觉细胞分化阶段的差异表达。我们使用RTqPCR验证了其中四个基因,并进行了氧化石墨烯功能分析。这些基因的差异表达表明它们可能在蝾螈味觉细胞分化中起作用。
{"title":"Transcriptome analysis of axolotl oropharyngeal explants during taste bud differentiation stages","authors":"Priya Kohli ,&nbsp;Lauren Marazzi ,&nbsp;Deborah Eastman","doi":"10.1016/j.mod.2020.103597","DOIUrl":"10.1016/j.mod.2020.103597","url":null,"abstract":"<div><p>The Mexican salamander, <em>Ambystoma mexicanum</em> (Axolotl), is an excellent vertebrate model system to understand development and regeneration. Studies in axolotl embryos have provided important insights into taste bud development. Taste bud specification and determination occur in the oropharyngeal endoderm of axolotl embryos during gastrulation and neurulation, respectively, whereas taste bud innervation and taste cell differentiation occur later in development. Axolotl embryos are amenable to microsurgery, and tissue explants develop readily in vitro. We performed RNA-seq analysis to investigate the differential expression of genes in oropharyngeal explants at several stages of taste cell differentiation. Since the axolotl genome has only recently been sequenced, we used a Trinity pipeline to perform de novo assembly of sequencing reads. Linear models for RNA-seq data were used to identify differentially expressed genes. We found 1234 unique genes differentially expressed during taste cell differentiation stages. We validated four of these genes using RTqPCR and performed GO functional analysis. The differential expression of these genes suggests that they may play a role in taste cell differentiation in axolotls.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"161 ","pages":"Article 103597"},"PeriodicalIF":2.6,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103597","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37631523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Zebrafish Pax1a and Pax1b are required for pharyngeal pouch morphogenesis and ceratobranchial cartilage development 斑马鱼咽袋的形态形成和角鳃软骨的发育需要Pax1a和Pax1b
IF 2.6 Q2 Medicine Pub Date : 2020-03-01 DOI: 10.1016/j.mod.2020.103598
Yu-Hsiu Liu , Tz-Chi Lin , Sheng-Ping L. Hwang

Pharyngeal arches are derived from all three germ layers and molecular interactions among the tissue types are required for proper development of subsequent pharyngeal cartilages; however, the mechanisms underlying this process are not fully described. Here we report that in zebrafish, Pax1a and Pax1b have overlapping and essential functions in pharyngeal pouch morphogenesis and subsequent ceratobranchial cartilage development. Both pax1a and pax1b are co-expressed in pharyngeal pouches, and time-lapse imaging of a novel Tg(pax1b:eGFP) enhancer trap line further revealed the sequential segmental development of pharyngeal pouches. Zebrafish pax1a−/−; pax1b−/− double mutant embryos generated by CRISPR-Cas9 mutagenesis exhibit unsegmented pharyngeal pouches 2–5 with small outpocketings. Endodermal expression of fgf3, tbx1 and edn1 is also absent in pharyngeal pouches 2–5 at 36 h post fertilization (hpf). Loss of ceratobranchial cartilage 1–4 and reduced or absent expression of dlx2a and hand2 in the pharyngeal arches 3–6 are observed in CRISPR mutant and morphant embryos that are deficient in both zebrafish pax1a and pax1b at 96 or 36 hpf. These results suggest that zebrafish Pax1a and Pax1b both regulate pharyngeal pouch morphogenesis by modulating expression of fgf3 and tbx1. Furthermore, our data support a model wherein endodermal Pax1a and Pax1b act through Fgf3 and Tbx-Edn1 signaling to non-autonomously regulate the development of ceratobranchial cartilage via expression of dlx2a and hand2.

咽弓来源于所有三个胚层,组织类型之间的分子相互作用是咽软骨发育的必要条件;然而,这一过程背后的机制并没有得到充分的描述。在斑马鱼中,Pax1a和Pax1b在咽袋形态发生和随后的角鳃软骨发育中具有重叠和重要的功能。pax1a和pax1b在咽囊中共表达,一种新的Tg(pax1b:eGFP)增强子陷阱线的延时成像进一步揭示了咽囊的顺序节段发育。斑马鱼pax1a−−;通过CRISPR-Cas9诱变产生的pax1b−/−双突变胚胎表现为未分割的咽袋2-5,具有小的外袋。在受精后36 h, fgf3、tbx1和edn1的内胚层表达在2-5咽囊中也不存在。在96或36 hpf时,斑马鱼pax1a和pax1b基因缺失的CRISPR突变体和变形胚胎中,观察到角鳃软骨1-4缺失,咽弓3-6中dlx2a和hand2的表达减少或缺失。这些结果表明斑马鱼Pax1a和Pax1b都通过调节fgf3和tbx1的表达来调节咽袋的形态发生。此外,我们的数据支持一个模型,即内胚层Pax1a和Pax1b通过Fgf3和Tbx-Edn1信号传导,通过dlx2a和hand2的表达非自主地调节角状鳃软骨的发育。
{"title":"Zebrafish Pax1a and Pax1b are required for pharyngeal pouch morphogenesis and ceratobranchial cartilage development","authors":"Yu-Hsiu Liu ,&nbsp;Tz-Chi Lin ,&nbsp;Sheng-Ping L. Hwang","doi":"10.1016/j.mod.2020.103598","DOIUrl":"10.1016/j.mod.2020.103598","url":null,"abstract":"<div><p>Pharyngeal arches are derived from all three germ layers and molecular interactions among the tissue types are required for proper development of subsequent pharyngeal cartilages; however, the mechanisms underlying this process are not fully described. Here we report that in zebrafish, Pax1a and Pax1b have overlapping and essential functions in pharyngeal pouch morphogenesis and subsequent ceratobranchial cartilage development. Both <em>pax1a</em> and <em>pax1b</em> are co-expressed in pharyngeal pouches, and time-lapse imaging of a novel <em>Tg(pax1b:eGFP)</em> enhancer trap line further revealed the sequential segmental development of pharyngeal pouches. Zebrafish <em>pax1a</em><sup>−/−</sup>; <em>pax1b</em><sup>−/−</sup> double mutant embryos generated by CRISPR-Cas9 mutagenesis exhibit unsegmented pharyngeal pouches 2–5 with small outpocketings. Endodermal expression of <em>fgf3</em>, <em>tbx1</em> and <em>edn1</em> is also absent in pharyngeal pouches 2–5 at 36 h post fertilization (hpf). Loss of ceratobranchial cartilage 1–4 and reduced or absent expression of <em>dlx2a</em> and <em>hand2</em> in the pharyngeal arches 3–6 are observed in CRISPR mutant and morphant embryos that are deficient in both zebrafish <em>pax1a</em> and <em>pax1b</em> at 96 or 36 hpf. These results suggest that zebrafish Pax1a and Pax1b both regulate pharyngeal pouch morphogenesis by modulating expression of <em>fgf3</em> and <em>tbx1</em>. Furthermore, our data support a model wherein endodermal Pax1a and Pax1b act through Fgf3 and Tbx-Edn1 signaling to non-autonomously regulate the development of ceratobranchial cartilage <em>via</em> expression of <em>dlx2a</em> and <em>hand2</em>.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"161 ","pages":"Article 103598"},"PeriodicalIF":2.6,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2020.103598","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37647742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Claudin-7b and Claudin-h are required for controlling cilia morphogenesis in the zebrafish kidney Claudin-7b和Claudin-h是控制斑马鱼肾脏纤毛形态发生所必需的
IF 2.6 Q2 Medicine Pub Date : 2020-03-01 DOI: 10.1016/j.mod.2019.103595
Miaomiao Jin , Donglian Wang , Wenyan Xu , Hong Wang , Ying Cao

Claudins are a family of proteins which are the most important components of the tight junctions. The location of Claudins on the renal tubule epithelial determines its paracellular transport characteristics, but whether Claudins have other functions in kidneys remains still unclear. Here, we showed that the transcripts encoding two Claudin family proteins, claudin-7b (cldn-7b) and claudin-h (cldn-h), were expressed in the transporting cells in the zebrafish pronephros. By knocking down of cldn-7b and cldn-h in zebrafish, we showed that these claudins morphants exhibited cystic kidneys accompanied with body curvature. Further analysis showed that down regulation of cldn-7b or cldn-h led to multiple defects in apico-basolateral polarity, cilia morphology and ciliary function in kidney. Moreover, the ciliary defect was confirmed by depletion of Cldn-7b or Cldn-h using CRISPR/Cas9 system. We also showed that both cldn-7b and cldn-h were genetically interacted with a well-known ciliary gene, arl13b. Deletion of arl13b led to curly cilia in the pronephros that phenocopied with cldn-7b and cldn-h morphants. Taken together, our data suggested that the tight junction protein, Cldn-7b and Cldn-h, regulate kidney development and function by affecting cilia morphology.

claudin是一个蛋白质家族,是紧密连接的最重要组成部分。Claudins在肾小管上皮上的位置决定了其细胞旁转运特性,但Claudins在肾脏中是否有其他功能尚不清楚。在这里,我们发现编码两个Claudin家族蛋白Claudin -7b (cldn-7b)和Claudin -h (cldn-h)的转录本在斑马鱼原肾的转运细胞中表达。通过在斑马鱼中敲除cldn-7b和cldn-h,我们发现这些cldn-变形体表现出囊肾并伴有身体弯曲。进一步分析表明,cldn-7b或cldn-h的下调导致肾脏尖基底侧极性、纤毛形态和纤毛功能的多重缺陷。此外,使用CRISPR/Cas9系统通过缺失Cldn-7b或Cldn-h来证实纤毛缺陷。我们还发现cldn-7b和cldn-h都与一个众所周知的纤毛基因arl13b相互作用。在cldn-7b和cldn-h表型的原肾中,arl13b的缺失导致了卷曲的纤毛。综上所述,我们的数据表明紧密连接蛋白Cldn-7b和Cldn-h通过影响纤毛形态来调节肾脏的发育和功能。
{"title":"Claudin-7b and Claudin-h are required for controlling cilia morphogenesis in the zebrafish kidney","authors":"Miaomiao Jin ,&nbsp;Donglian Wang ,&nbsp;Wenyan Xu ,&nbsp;Hong Wang ,&nbsp;Ying Cao","doi":"10.1016/j.mod.2019.103595","DOIUrl":"10.1016/j.mod.2019.103595","url":null,"abstract":"<div><p>Claudins are a family of proteins which are the most important components of the tight junctions. The location of Claudins on the renal tubule epithelial determines its paracellular transport characteristics, but whether Claudins have other functions in kidneys remains still unclear. Here, we showed that the transcripts encoding two Claudin family proteins, <em>claudin-7b</em> (<em>cldn-7b</em>) and <em>claudin-h</em> (<em>cldn-h</em>), were expressed in the transporting cells in the zebrafish pronephros. By knocking down of <em>cldn-7b</em> and <em>cldn-h</em> in zebrafish, we showed that these <em>claudins</em> morphants exhibited cystic kidneys accompanied with body curvature. Further analysis showed that down regulation of <em>cldn-7b</em> or <em>cldn-h</em> led to multiple defects in apico-basolateral polarity, cilia morphology and ciliary function in kidney. Moreover, the ciliary defect was confirmed by depletion of Cldn-7b or Cldn-h using CRISPR/Cas9 system. We also showed that both <em>cldn-7b</em> and <em>cldn-h</em> were genetically interacted with a well-known ciliary gene, <em>arl13b</em>. Deletion of <em>arl13b</em> led to curly cilia in the pronephros that phenocopied with <em>cldn-7b</em> and <em>cldn-h</em> morphants. Taken together, our data suggested that the tight junction protein, Cldn-7b and Cldn-h, regulate kidney development and function by affecting cilia morphology.</p></div>","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"161 ","pages":"Article 103595"},"PeriodicalIF":2.6,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2019.103595","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37500199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Editorial “MOD” 社论“MOD”
IF 2.6 Q2 Medicine Pub Date : 2020-03-01 DOI: 10.1016/j.mod.2019.103576
Roberto Mayor
{"title":"Editorial “MOD”","authors":"Roberto Mayor","doi":"10.1016/j.mod.2019.103576","DOIUrl":"10.1016/j.mod.2019.103576","url":null,"abstract":"","PeriodicalId":49844,"journal":{"name":"Mechanisms of Development","volume":"161 ","pages":"Article 103576"},"PeriodicalIF":2.6,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mod.2019.103576","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49372793","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Mechanisms of Development
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1