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Action potential propagation and block in a model of atrial tissue with myocyte-fibroblast coupling. 心肌细胞-成纤维细胞偶联心房组织模型的动作电位传导和阻滞。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2021-03-15 DOI: 10.1093/imammb/dqaa014
Peter Mortensen, Hao Gao, Godfrey Smith, Radostin D Simitev

The electrical coupling between myocytes and fibroblasts and the spacial distribution of fibroblasts within myocardial tissues are significant factors in triggering and sustaining cardiac arrhythmias, but their roles are poorly understood. This article describes both direct numerical simulations and an asymptotic theory of propagation and block of electrical excitation in a model of atrial tissue with myocyte-fibroblast coupling. In particular, three idealized fibroblast distributions are introduced: uniform distribution, fibroblast barrier and myocyte strait-all believed to be constituent blocks of realistic fibroblast distributions. Primary action potential biomarkers including conduction velocity, peak potential and triangulation index are estimated from direct simulations in all cases. Propagation block is found to occur at certain critical values of the parameters defining each idealized fibroblast distribution, and these critical values are accurately determined. An asymptotic theory proposed earlier is extended and applied to the case of a uniform fibroblast distribution. Biomarker values are obtained from hybrid analytical-numerical solutions of coupled fast-time and slow-time periodic boundary value problems and compare well to direct numerical simulations. The boundary of absolute refractoriness is determined solely by the fast-time problem and is found to depend on the values of the myocyte potential and on the slow inactivation variable of the sodium current ahead of the propagating pulse. In turn, these quantities are estimated from the slow-time problem using a regular perturbation expansion to find the steady state of the coupled myocyte-fibroblast kinetics. The asymptotic theory gives a simple analytical expression that captures with remarkable accuracy the block of propagation in the presence of fibroblasts.

肌细胞和成纤维细胞之间的电偶联以及成纤维细胞在心肌组织中的空间分布是诱发和维持心律失常的重要因素,但它们的作用尚不清楚。本文描述了心房组织肌细胞-成纤维细胞耦合模型的直接数值模拟和电兴奋传播和阻滞的渐近理论。特别介绍了三种理想的成纤维细胞分布:均匀分布、成纤维细胞屏障和肌细胞海峡,它们都被认为是现实成纤维细胞分布的组成块。主要动作电位生物标志物包括传导速度、峰值电位和三角测量指数在所有情况下的直接模拟估计。发现在定义每个理想成纤维细胞分布的参数的某些临界值处发生传播阻滞,并且这些临界值是准确确定的。将先前提出的渐近理论推广并应用于成纤维细胞均匀分布的情况。生物标记值是由耦合快时和慢时周期边值问题的混合解析-数值解获得的,与直接数值模拟相比效果很好。绝对耐火度的边界仅由快时间问题决定,并被发现取决于肌细胞电位的值和在传播脉冲之前钠电流的缓慢失活变量。反过来,这些量是估计从慢时间问题使用常规扰动展开,以找到耦合的肌细胞-成纤维细胞动力学的稳定状态。渐近理论给出了一个简单的解析表达式,它以惊人的准确性捕获了成纤维细胞存在时的增殖阻滞。
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引用次数: 3
Simple model of atherosclerosis in cylindrical arteries: impact of anisotropic growth on Glagov remodeling. 圆柱形动脉粥样硬化简单模型:各向异性生长对Glagov重塑的影响。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2021-03-15 DOI: 10.1093/imammb/dqaa011
Navid Mohammad Mirzaei, Pak-Wing Fok

In 1987, Seymour Glagov observed that arteries went through a two-stage remodeling process as a result of plaque growth: first, a compensatory phase where the lumen area remains approximately constant and second, an encroachment phase where the lumen area decreases over time. In this paper, we investigate the effect of growth anisotropy on Glagov remodeling in five different cases: pure radial, pure circumferential, pure axial, isotropic and general anisotropic growth where the elements of the growth tensor are chosen to minimize the total energy. We suggest that the nature of anisotropy is inclined towards the growth direction that requires the least amount of energy. Our framework is the theory of morphoelasticity on an axisymmetric arterial domain. For each case, we explore their specific effect on the Glagov curves. For the latter two cases, we also provide the changes in collagen fiber orientation and length in the intima, media and adventitia. In addition, we compare the total energy produced by growth in radial, circumferential and axial direction and deduce that using a radially dominant anisotropic growth leads to lower strain energy than isotropic growth.

1987年,Seymour Glagov观察到,由于斑块的生长,动脉经历了两个阶段的重塑过程:第一阶段是代偿阶段,管腔面积保持大致恒定;第二阶段是侵蚀阶段,管腔面积随着时间的推移而减少。本文研究了生长各向异性对纯径向、纯周向、纯轴向、各向同性和一般各向异性五种不同情况下Glagov重构的影响,其中生长张量的元素选择使总能量最小。我们认为,各向异性的性质倾向于需要最少能量的生长方向。我们的框架是轴对称动脉域上的形态弹性理论。对于每种情况,我们探讨了它们对格拉戈夫曲线的具体影响。对于后两种情况,我们还提供了内膜、中膜和外膜中胶原纤维方向和长度的变化。此外,我们比较了径向、周向和轴向生长产生的总能量,并推断出径向各向异性生长比各向同性生长产生的应变能更低。
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引用次数: 2
Corrigendum: A proposed fractional order Gompertz model, and its application to tumour growth data. 更正:提出的分数阶Gompertz模型及其在肿瘤生长数据中的应用。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2021-03-15 DOI: 10.1093/imammb/dqaa012
Larisse Bolton, Alain H J J Cloot, Schalk W Schoombie, Jacobus P Slabbert
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引用次数: 0
Stochastic intracellular regulation can remove oscillations in a model of tissue growth. 随机细胞内调节可以消除组织生长模型中的振荡。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-12-15 DOI: 10.1093/imammb/dqaa009
M Banerjee, V Volpert

The work is devoted to the analysis of cell population dynamics where cells make a choice between differentiation and apoptosis. This choice is based on the values of intracellular proteins whose concentrations are described by a system of ordinary differential equations with bistable dynamics. Intracellular regulation and cell fate are controlled by the extracellular regulation through the number of differentiated cells. It is shown that the total cell number necessarily oscillates if the initial condition in the intracellular regulation is fixed. These oscillations can be suppressed if the initial condition is a random variable with a sufficiently large variation. Thus, the result of the work suggests a possible answer to the question about the role of stochasticity in the intracellular regulation.

这项工作致力于分析细胞群体动力学,细胞在分化和凋亡之间做出选择。这种选择是基于细胞内蛋白质的值,其浓度由具有双稳态动力学的常微分方程系统描述。细胞内调控和细胞命运是由细胞外调控通过分化细胞的数量来控制的。结果表明,当细胞内调节的初始条件固定时,细胞总数必然振荡。如果初始条件是具有足够大变化的随机变量,则可以抑制这些振荡。因此,这项工作的结果为细胞内调控中随机性的作用提供了一个可能的答案。
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引用次数: 1
Mathematically modelling inflammation as a promoter of tumour growth. 数学模拟炎症作为肿瘤生长的促进剂。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-12-15 DOI: 10.1093/imammb/dqaa005
Kathleen P Wilkie, Farjana Aktar

Inflammation is now known to play a significant role in tumour growth and progression. It is also difficult to adequately quantify systemic inflammation and the resulting localized effects in cancer. Here, we use experimental data to infer the possible contributions of inflammation in a mouse model of cancer. The model is validated by predicting tumour growth under anti-inflammatory treatments, and combination cancer therapies are explored. We then extend the model to consider simultaneous tumour implants at two distinct sites, which experimentally was shown to result in one large and one small tumour. We use this model to examine the role inflammation may play in the growth rate separation. Finally, we use this predictive two-tumour model to explore implications of inflammation on metastases, surgical removal of the primary and adjuvant anti-inflammatory treatments. This work suggests that improved tumour control can be obtained by targeting both the cancer and host, through anti-inflammatory treatments, including reduced metastatic burden post-surgical removal of primary tumours.

现在已知炎症在肿瘤生长和发展中起着重要作用。也很难充分量化全身性炎症及其对癌症的局部影响。在这里,我们使用实验数据来推断炎症在小鼠癌症模型中的可能贡献。通过预测抗炎治疗下的肿瘤生长,验证了该模型,并探索了联合治疗癌症的方法。然后,我们将模型扩展到考虑同时在两个不同的位置植入肿瘤,实验表明,这将导致一个大的和一个小的肿瘤。我们使用这个模型来检验炎症在生长速率分离中可能起的作用。最后,我们使用这种预测双肿瘤模型来探讨炎症对转移、手术切除和辅助抗炎治疗的影响。这项工作表明,通过抗炎治疗,包括减少原发肿瘤手术切除后的转移性负担,可以同时靶向癌症和宿主,从而改善肿瘤控制。
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引用次数: 2
Describing the evolution of myeloid-derived leucocytes in treated B-lineage paediatric acute lymphoblastic leukaemia with a data-driven granulocyte-monocyte-blast model. 用数据驱动的粒细胞-单核细胞-母细胞模型描述治疗的b系儿科急性淋巴细胞白血病中骨髓来源的白细胞的进化。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-12-15 DOI: 10.1093/imammb/dqaa003
Larisse Bolton, Thomas M Acho, David K Stones, Cang Hui

Acute lymphoblastic leukaemia (ALL) is associated with a compromised myeloid system. Understanding the state of granulopoiesis in a patient during treatment, places the clinician in an advantageous position. Mathematical models are aids able to present the clinician with insight into the behaviour of myeloid-derived leucocytes. The main objective of this investigation was to determine whether a proposed model of ALL during induction therapy would be a usable descriptor of the system. The model assumes the co-occurrence of the independent leukaemic and normal marrow populations. It is comprised of four delay-differential equations, capturing the fundamental characteristics of the blood and bone marrow myeloid leucocytes and B-lineage lymphoblasts. The effect of treatment was presumed to amplify cell loss within both populations. Clinical data was used to inform the construction, calibration and examination of the model. The model is promising-presenting a good foundation for the development of a clinical supportive tool. The predicted parameters and forecasts aligned with clinical expectations. The starting assumptions were also found to be sound. A comparative investigation highlighted the differing responses of similarly diagnosed patients during treatment and further testing on patient data emphasized patient specificity. Model examination recommended the explicit consideration of the suppressive effects of treatment on the normal population production. Additionally, patient-related factors that could have resulted in such different responses between patients need to be considered. The parameter estimates require refinement to incorporate the action of treatment. Furthermore, the myeloid populations require separate consideration. Despite the model providing explanation, incorporating these recommendations would enhance both model usability and predictive capacity.

急性淋巴细胞白血病(ALL)与骨髓系统受损有关。了解患者在治疗过程中的颗粒生成状态,使临床医生处于有利地位。数学模型可以帮助临床医生深入了解骨髓源性白细胞的行为。本研究的主要目的是确定在诱导治疗期间提出的ALL模型是否可以作为该系统的可用描述符。该模型假定独立的白血病群体和正常骨髓群体同时出现。它由四个延迟微分方程组成,捕获了血液和骨髓骨髓性白细胞和b系淋巴细胞的基本特征。据推测,治疗的效果会在两个人群中放大细胞损失。使用临床数据来指导模型的构建、校准和检验。该模型很有前景,为临床辅助工具的开发提供了良好的基础。预测参数和预测符合临床期望。开始的假设也被认为是合理的。一项比较调查强调了类似诊断的患者在治疗期间的不同反应,对患者数据的进一步测试强调了患者的特异性。模型检验建议明确考虑处理对正常种群生产的抑制作用。此外,需要考虑可能导致患者之间不同反应的患者相关因素。参数估计需要改进以纳入处理的作用。此外,髓系人群需要单独考虑。尽管模型提供了解释,但纳入这些建议将提高模型的可用性和预测能力。
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引用次数: 0
Mathematical modelling of fungi-initiated siderophore-iron interactions. 真菌引发的铁载体-铁相互作用的数学模型。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-12-15 DOI: 10.1093/imammb/dqaa008
M Jabed A Choudhury, Philip M J Trevelyan, Graeme P Boswell

Nearly all life forms require iron to survive and function. Microorganisms utilize a number of mechanisms to acquire iron including the production of siderophores, which are organic compounds that combine with ferric iron into forms that are easily absorbed by the microorganism. There has been significant experimental investigation into the role, distribution and function of siderophores in fungi but until now no predictive tools have been developed to qualify or quantify fungi-initiated siderophore-iron interactions. In this investigation, we construct the first mathematical models of siderophore function related to fungi. Initially, a set of partial differential equations are calibrated and integrated numerically to generate quantitative predictions on the spatio-temporal distributions of siderophores and related populations. This model is then reduced to a simpler set of equations that are solved algebraically giving rise to solutions that predict the distributions of siderophores and resultant compounds. These algebraic results require the calculation of zeros of cross products of Bessel functions and thus new algebraic expansions are derived for a variety of different cases that are in agreement with numerically computed values. The results of the modelling are consistent with experimental data while the analysis provides new quantitative predictions on the time scales involved between siderophore production and iron uptake along with how the total amount of iron acquired by the fungus depends on its environment. The implications to bio-technological applications are briefly discussed.

几乎所有的生命形式都需要铁来生存和运作。微生物利用多种机制来获取铁,包括铁载体的产生,铁载体是一种有机化合物,与铁结合成易于被微生物吸收的形式。对铁载体在真菌中的作用、分布和功能进行了重要的实验研究,但到目前为止,还没有开发出预测工具来限定或量化真菌引发的铁载体-铁相互作用。在这项研究中,我们建立了第一个与真菌有关的铁载体功能的数学模型。首先,对一组偏微分方程进行校准和数值积分,以产生对铁载体和相关种群时空分布的定量预测。然后将该模型简化为一组更简单的方程,这些方程用代数方法求解,从而得到预测铁载体及其合成化合物分布的解。这些代数结果需要计算贝塞尔函数的叉积的零点,从而推导出与数值计算值一致的各种不同情况的新的代数展开式。模型的结果与实验数据一致,而分析提供了新的定量预测,涉及铁载体生产和铁摄取之间的时间尺度,以及真菌获得的铁总量如何取决于其环境。简要讨论了对生物技术应用的影响。
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引用次数: 0
Mechanical characterization of porcine liver properties for computational simulation of indentation on cancerous tissue. 癌变组织压痕计算模拟猪肝特性的力学特性。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-12-15 DOI: 10.1093/imammb/dqaa006
Yingqiao Yang, Kewei Li, Gerhard Sommer, Kai-Leung Yung, Gerhard A Holzapfel

An accurate characterization of soft biological tissue properties is essential for a realistic simulation of surgical procedures. Unconfined uniaxial compression tests with specimens affixed to the fixtures are often performed to characterize the stress-stretch curves of soft biological tissues, with which the material parameters can be obtained. However, the constrained boundary condition causes non-uniform deformation during the uniaxial test, posing challenges for accurate measurement of tissue deformation. In this study, we measured the deformation locally at the middle of liver specimens and obtained the corresponding stress-stretch curves. Since the effect of the constrained boundary condition on the local deformation of specimen is minimized, the stress-stretch curves are thus more realistic. Subsequently, we fitted the experimental stress-stretch curves with several constitutive models and found that the first-order Ogden hyperelastic material model was most suitable for characterizing the mechanical properties of porcine liver tissues. To further verify the characterized material properties, we carried out indentation tests on porcine liver specimens and compared the experimental data with computational results by using finite element simulations. A good agreement was achieved. Finally, we constructed computational models of liver tissue with a tumor and investigated the effect of the tumor on the mechanical response of the tissue under indentation. The computational results revealed that the liver specimen with tumor shows a stiffer response if the distance between the tumor and the indenter is small.

软体生物组织特性的准确表征对于外科手术过程的真实模拟至关重要。在无侧限单轴压缩试验中,通常采用固定在夹具上的试样来表征生物软组织的应力-拉伸曲线,从而获得材料参数。然而,在单轴试验过程中,约束边界条件导致组织变形不均匀,给组织变形的精确测量带来了挑战。在本研究中,我们测量了肝脏标本中间的局部变形,得到了相应的应力-拉伸曲线。由于约束边界条件对试件局部变形的影响最小,因此应力-拉伸曲线更加真实。随后,我们用几种本构模型拟合了实验应力-拉伸曲线,发现一阶Ogden超弹性材料模型最适合表征猪肝组织的力学性能。为了进一步验证表征材料的性能,我们对猪肝样品进行了压痕试验,并通过有限元模拟将实验数据与计算结果进行了比较。达成了很好的协议。最后,我们建立了带肿瘤的肝组织的计算模型,并研究了肿瘤对压痕下组织力学响应的影响。计算结果表明,当肿瘤与压头之间的距离较小时,含肿瘤的肝脏标本的响应更强。
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引用次数: 6
Synchronization in epidemic growth and the impossibility of selective containment 流行病增长的同步性和选择性遏制的不可能性
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-11-07 DOI: 10.1101/2020.11.06.20226894
J. C. Budich, E. Bergholtz
Containment, aiming to prevent the epidemic stage of community-spreading altogether, and mitigation, aiming to merely 'flatten the curve' of a wide-ranged outbreak, constitute two qualitatively different approaches to combating an epidemic through non-pharmaceutical interventions. Here, we study a simple model of epidemic dynamics separating the population into two groups, namely a low-risk group and a high-risk group, for which different strategies are pursued. Due to synchronization effects, we find that maintaining a slower epidemic growth behavior for the high-risk group is unstable against any finite coupling between the two groups. More precisely, the density of infected individuals in the two groups qualitatively evolves very similarly, apart from a small time delay and an overall scaling factor quantifying the coupling between the groups. Hence, selective containment of the epidemic in a targeted (high-risk) group is practically impossible whenever the surrounding society implements a mitigated community-spreading. We relate our general findings to the ongoing COVID-19 pandemic.
遏制旨在完全防止社区传播的流行病阶段,而缓解旨在仅仅使大范围爆发的“曲线变平”,这是通过非药物干预措施抗击流行病的两种质量不同的方法。在这里,我们研究了一个简单的流行病动力学模型,将人口分为两组,即低风险组和高风险组,并对其采取不同的策略。由于同步效应,我们发现对于两组之间的任何有限耦合,高危组保持较慢的流行病增长行为是不稳定的。更准确地说,除了有一个小的时间延迟和一个量化两组之间耦合的总体比例因子外,两组中受感染个体的密度在质量上的演变非常相似。因此,只要周围社会实施减轻的社区传播,就不可能在目标(高风险)群体中选择性地遏制疫情。我们将我们的总体调查结果与正在进行的COVID-19大流行联系起来。
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引用次数: 0
The interplay between fishery yield and top predator culling in a multispecies fishery context. 多物种渔业环境下渔业产量与顶级捕食者淘汰之间的相互作用。
IF 1.1 4区 数学 Q4 BIOLOGY Pub Date : 2020-09-15 DOI: 10.1093/imammb/dqz017
Michel Iskin da S Costa, Lucas Dos Anjos

In food webs, fishery can play the role of top predator, competing thus with other top predators for valuable food resources. In this view, it has been claimed in fisheries management that culling of top predators can be a means to improve fishery yield. To investigate this hypothesis, we use theoretical population models to assess in a multispecies context how fishery yield from target species harvest responds to top predator cull. Defying crisp summary, the four analysed food web models show that this response may be either positive or negative or both, indicating that in terms of multispecies fishery management the harvest yield may not accrue as a consequence of predator removal. In addition, this multitude of behaviours points also to the fact that the response of fishery yield to top predator cull may be difficult to assess.

在食物网中,渔业可以扮演顶级捕食者的角色,从而与其他顶级捕食者争夺宝贵的食物资源。在这种观点中,渔业管理部门声称,捕杀顶级捕食者可以成为提高渔业产量的一种手段。为了研究这一假设,我们使用理论种群模型来评估在多物种背景下目标物种收获的渔业产量如何响应顶级捕食者的捕杀。与简洁的总结相反,四个分析的食物网模型表明,这种反应可能是积极的,也可能是消极的,或者两者兼而有之,这表明就多物种渔业管理而言,收获产量可能不会因为捕食者的移除而增加。此外,这多种行为还表明,渔业产量对顶级捕食者捕杀的反应可能难以评估。
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引用次数: 2
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