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Gene editing and overexpression of soybean miR396a reveals its role in salinity tolerance and development 大豆 miR396a 的基因编辑和过表达揭示了其在耐盐性和发育中的作用
Pub Date : 2024-09-08 DOI: 10.1016/j.cj.2024.08.003
Xiangqian Chen, Xuemin Jiang, Xianjun Sun, Zheng Hu, Fei Gao, Xiuping Wang, Hui Zhang, Rui Chen, Qiyan Jiang
MicroRNAs (miRNAs) are versatile regulators of gene expression at both the transcription and post-transcription levels. The microRNA miR396 plays vital roles in growth, development, and resistance to abiotic stresses in many plant species. However, the roles and functions of miR396 in soybeans are not well understood. Here, we report that influences soybean development and salinity tolerance. We found that soybean was responsive to salt stress. gene-edited lines (-GEs), created using CRISPR/Cas9, exhibited more branches, higher grain yields, and greater salinity tolerance than control plants. The transcripts in lines with altered abundance of -GE were significantly enriched for biological processes related to hormone regulation. Overexpression of the precursor (pre--OE) resulted in developmental deficiencies including dwarfness, abnormal inflorescences and flowers, smaller and fewer seeds, and small leaves with larger and more numerous stomata. Transcriptome analysis indicated photosynthesis-related genes were downregulated in pre--OE plants. These results contribute valuable insights into the function of in soybeans and hold promise for enhancing soybean yield and salinity tolerance through germplasm innovation.
微小 RNA(miRNA)是转录和转录后基因表达的多功能调节因子。在许多植物物种中,microRNA miR396 在生长、发育和抵抗非生物胁迫方面发挥着重要作用。然而,miR396 在大豆中的作用和功能还不十分清楚。在此,我们报告了影响大豆发育和耐盐性的 miR396。我们发现大豆对盐胁迫有反应。与对照植物相比,利用 CRISPR/Cas9 创建的基因编辑品系(-GEs)表现出更多的分枝、更高的谷物产量和更强的耐盐性。在-GE丰度改变的品系中,与激素调控相关的生物过程的转录本显著富集。过量表达前体(pre--OE)会导致发育缺陷,包括矮小、花序和花朵异常、种子更小且数量更少、叶片小且气孔更大更多。转录组分析表明,光合作用相关基因在pre--OE植株中下调。这些结果有助于深入了解大豆的功能,为通过种质创新提高大豆产量和耐盐性带来了希望。
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引用次数: 0
PHD17 acts as a target of miR1320 to negatively control cold tolerance via JA-activated signaling in rice PHD17 作为 miR1320 的靶标,通过 JA 激活的信号转导负向控制水稻的耐寒性
Pub Date : 2024-08-22 DOI: 10.1016/j.cj.2024.07.012
Yan Wang, Yang Shen, Weifeng Dong, Xiaoxi Cai, Junkai Yang, Yue Chen, Bowei Jia, Mingzhe Sun, Xiaoli Sun
Plant Homeo Domain (PHD) proteins are involved in diverse biological processes during plant growth. However, the regulation of genes on rice cold stress response remains largely unknown. Here, we reported that negatively regulated cold tolerance in rice seedlings as a cleavage target of . expression was greatly induced by cold stress, and was down-regulated by overexpression and up-regulated by knockdown. Through 5′RACE and dual luciferase assays, we found that targeted and cleaved the 3′UTR region of . PHD17 was a nuclear-localized protein and acted as a transcriptional activator in yeast. overexpression reduced cold tolerance of rice seedlings, while knockout of increased cold tolerance, partially via the CBF cold signaling. By combining transcriptomic and physiological analyses, we demonstrated that modulated ROS homeostasis and flavonoid accumulation under cold stress. K-means clustering analysis revealed that differentially expressed genes in transgenic lines were significantly enriched in the jasmonic acid (JA) biosynthesis pathway, and expression of JA biosynthesis and signaling genes was verified to be affected by . Cold stress tests applied with MeJA or IBU (JA synthesis inhibitor) further suggested the involvement of in JA-mediated cold signaling. Taken together, our results suggest that acts downstream of and negatively regulates cold tolerance of rice seedlings through JA-mediated signaling pathway.
植物同源结构域(PHD)蛋白参与了植物生长过程中的多种生物过程。然而,水稻冷胁迫响应基因的调控在很大程度上仍是未知的。本文报道了水稻幼苗耐寒性的负调控基因.表达的裂解靶标在冷胁迫下被大量诱导,过表达下调,敲除上调。通过5′RACE和双荧光素酶检测,我们发现.PHD17是一种核定位蛋白,在酵母中作为转录激活因子靶向并裂解了.PHD17的3′UTR区域。通过结合转录组学和生理学分析,我们证明了冷胁迫下ROS平衡和类黄酮积累的调节作用。K-均值聚类分析显示,转基因品系中的差异表达基因显著富集在茉莉酸(JA)生物合成途径中,并验证了JA生物合成和信号转导基因的表达受.MeJA的影响。用 MeJA 或 IBU(JA 合成抑制剂)进行的冷胁迫试验进一步表明,JA 介导的冷信号转导参与其中。综上所述,我们的研究结果表明,JA介导的信号通路对水稻幼苗的耐寒性起下游和负调控作用。
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引用次数: 0
LMI1, a DUF292 protein family gene, regulates immune responses and cell death in rice DUF292 蛋白家族基因 LMI1 调节水稻的免疫反应和细胞死亡
Pub Date : 2024-08-22 DOI: 10.1016/j.cj.2024.07.015
Wenjin Yin, Qianqian Zhong, Zhe’nan Zhu, Zhi’ning Zhang, Tiantian Lu, Xi Yang, Hui Wang, Yujia Gu, Sanfeng Li, Mei Lu, Dan Mu, Yuexing Wang, Yuchun Rao
A novel rice mutant showed increased resistance to bacterial blight. encodes a DUF292 protein and regulates defense immune responses and cell death via vesicle trafficking in chloroplasts.
一种新型水稻突变体对细菌性枯萎病的抗性增强。
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引用次数: 0
The dual role of casein kinase 1, DTG1, in regulating tillering and grain size in rice 酪蛋白激酶 1 DTG1 在调节水稻分蘖和粒径中的双重作用
Pub Date : 2024-08-21 DOI: 10.1016/j.cj.2024.07.016
Jijin Li, Dan Zhou, Deke Li, Gen Wang, Rui Qin, Chengqin Gong, Kang Chen, Yunqing Tong, Lingfeng Li, Keke Liu, Jiangkun Ye, Binjiu Luo, Chenglong Jiang, Haipeng Wang, Jinghua Jin, Qiming Deng, Shiquan Wang, Jun Zhu, Ting Zou, Shuangcheng Li, Ping Li, Yueyang Liang
Tiller number and grain size are important agronomic traits that determine grain yield in rice. Here, we demonstrate that DEFECTIVE TILLER GROWTH 1 (DTG1), a member of the casein kinase 1 protein family, exerts a co-regulatory effect on tiller number and grain size. We identified a single amino acid substitution in DTG1 (I357K) that caused a decrease in tiller number and an increase in grain size in NIL-. Genetic analyses revealed that DTG1 plays a pivotal role in regulation of tillering and grain size. The allelic variant exhibited robust functionality in suppressing tillering. We show that is preferentially expressed in tiller buds and young panicles, and negatively regulates grain size by restricting cell proliferation in spikelet hulls. We further confirm that DTG1 functioned in grain size regulation by directly interacting with Grain Width 2 (GW2), a critical grain size regulator in rice. The CRISPR/Cas9-mediated elimination of significantly enhanced tiller number and grain size, thereby increasing rice grain yield under field conditions, thus highlighting potential value of in rice breeding.
分蘖数和粒径是决定水稻产量的重要农艺性状。在这里,我们证明了酪蛋白激酶 1 蛋白家族成员之一的 DEFECTIVE TILLER GROWTH 1(DTG1)对分蘖数和谷粒大小具有共同调节作用。我们发现 DTG1 中的一个氨基酸取代(I357K)会导致 NIL- 的分蘖数减少和粒径增大。遗传分析表明,DTG1 在分蘖和粒径的调控中起着关键作用。等位基因变体在抑制分蘖方面表现出强大的功能。我们发现,DTG1 在分蘖芽和幼小的圆锥花序中优先表达,并通过限制穗皮中细胞的增殖来负向调节谷粒的大小。我们进一步证实,DTG1 通过直接与水稻谷粒宽度 2(GW2)--一个关键的谷粒大小调节因子--相互作用,在谷粒大小调节中发挥作用。在 CRISPR/Cas9 介导下,消除 DTG1 能显著提高分蘖数和粒径,从而提高水稻在田间条件下的产量,这凸显了其在水稻育种中的潜在价值。
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引用次数: 0
Adjusting the amylose content of semi-glutinous japonica rice by genome editing of uORF6 in the wx gene 通过基因组编辑 wx 基因中的 uORF6 来调整半糯性粳稻的直链淀粉含量
Pub Date : 2024-08-20 DOI: 10.1016/j.cj.2024.07.011
Kai Lu, Yadong Zhang, Lei He, Cheng Li, Wenhua Liang, Tao Chen, Qingyong Zhao, Zhen Zhu, Ling Zhao, Chunfang Zhao, Xiaodong Wei, Shu Yao, Lihui Zhou, Qiaoquan Liu, Cailin Wang
Amylose content, the key determinant of rice eating and cooking quality, is regulated primarily by the () gene. We adjusted the amylose content and transparency of semi-glutinous rice carrying the allele by genome editing of upstream open reading frame 6 (uORF6) of .
直链淀粉含量是决定水稻食用和烹饪品质的关键因素,主要由()基因调控。我们通过对......基因的上游开放阅读框 6(uORF6)进行基因组编辑,调整了携带等位基因的半糯米的直链淀粉含量和透明度。
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引用次数: 0
Selenium–nitrogen-co-doped carbon dots increase rice seedling growth and salt resistance 掺硒氮的碳点能提高水稻秧苗的生长和抗盐性
Pub Date : 2024-08-18 DOI: 10.1016/j.cj.2024.06.014
Yadong Li, Ronghua Xu, Qianying Han, Shang Lei, Congli Ma, Jingyi Qi, Yingliang Liu, Hongjie Wang
Soil salinity seriously affects the utilization of farmland and threatens the crop production. Here, a selenium-nitrogen-co-doped carbon dots was developed, which increased rice seedling growth and alleviated its inhibition by salt stress by foliar spraying. The treatment activated Ca and jasmonic acid signaling pathways and increased iron homeostasis, antioxidant defense, and cell wall development of rice seedlings. It could be used to increase crop resistance to environmental stress.
土壤盐碱化严重影响耕地的利用,威胁农作物的产量。本研究开发了一种掺硒氮的碳点,通过叶面喷洒提高了水稻秧苗的生长速度,并缓解了盐胁迫对秧苗生长的抑制。处理激活了钙和茉莉酸信号通路,增加了水稻秧苗的铁平衡、抗氧化防御和细胞壁发育。它可用于提高作物对环境胁迫的抗性。
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引用次数: 0
Puccinia triticina effector Pt-1234 modulates wheat immunity by targeting transcription factor TaNAC069 via its C subdomain 三联真菌效应因子 Pt-1234 通过 C 亚域靶向转录因子 TaNAC069 调节小麦免疫力
Pub Date : 2024-08-18 DOI: 10.1016/j.cj.2024.07.013
Huaimin Geng, Yanjun Zhang, Zhen Qin, Shen Wang, Changshan Liu, Zhongchi Cui, Daqun Liu, Haiyan Wang
The NAC (NAM, ATAF1/2, and CUC2) is a defense-associated transcription factor (TF) family that positively regulates defense responses to pathogen infection. positively regulates resistance in wheat to (). However, the molecular mechanism of its interaction with a effector is not clear. We found that effector Pt-1234 interacts with TaNAC069 to subvert host immunity during infection. Quantitative real-time PCR analysis showed that expression of was significantly up-regulated during the early stage of infection. Protein-mediated cell death assays in wheat showed that the Pt-1234 protein was unable to induce cell death in wheat near-isogenic lines carrying different leaf rust resistance genes, whereas it suppressed BAX-induced cell death in leaves of . Silencing of by host-induced gene silencing (HIGS) significantly reduced the virulence of in the susceptible wheat variety Thatcher. The C subdomain of TaNAC069 was responsible for its interaction with Pt-1234, and the E subdomain was required for TaNAC069-mediated defense responses to in planta. These findings indicate that utilizes Pt-1234 to interact with wheat transcription factor TaNAC069 through its C subdomain, thereby modulating wheat immunity.
NAC(NAM、ATAF1/2 和 CUC2)是一个防御相关转录因子(TF)家族,可积极调节对病原体感染的防御反应。然而,它与效应子相互作用的分子机制尚不清楚。我们发现,效应子 Pt-1234 与 TaNAC069 相互作用,在感染过程中颠覆宿主免疫。定量实时 PCR 分析表明,TaNAC069 的表达在感染早期明显上调。蛋白质介导的小麦细胞死亡试验表明,Pt-1234 蛋白不能诱导携带不同叶锈病抗性基因的小麦近交系中的细胞死亡,但它能抑制 BAX 诱导的小麦叶片细胞死亡。 通过宿主诱导基因沉默(HIGS)沉默 Pt-1234 蛋白,能显著降低易感小麦品种 Thatcher 的毒力。TaNAC069 的 C 亚域负责其与 Pt-1234 的相互作用,而 E 亚域则是 TaNAC069 介导的植物体内防御反应所必需的。这些发现表明,Pt-1234通过其C亚域与小麦转录因子TaNAC069相互作用,从而调节小麦免疫。
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引用次数: 0
QTL mapping by GWAS and functional analysis of OsbZIP72 for cold tolerance at rice seedling stage 通过 GWAS 和功能分析绘制水稻幼苗期 OsbZIP72 耐寒性的 QTL 图谱
Pub Date : 2024-08-18 DOI: 10.1016/j.cj.2024.07.014
Yunsong Gu, Haifeng Guo, Huahui Li, Runbin Su, Najeeb Ullah Khan, Jin Li, Shichen Han, Weitong Zhao, Wei Ye, Shilei Gao, Andong Zou, Meng Zhang, Xingming Sun, Zhanying Zhang, Hongliang Zhang, Pingrong Yuan, Jinjie Li, Zichao Li
Rice is a major crop susceptible to chilling stress. The identification of quantitative trait loci and genes for cold tolerance is crucial for the rice breeding. Of 30 quantitative-trait loci affecting seedling cold tolerance identified in a genome-wide association study of 540 rice accessions, was assigned as the causative gene for one, . A single-nucleotide polymorphism in its promoter accounted for variation in expression between and subspecies. The favorable haplotype of originated in wild rice and contributed to the expansion of rice to colder habitats. positively regulates genes coding reactive oxygen species (ROS)-scavenging proteins and maintains intracellular ROS homeostasis. These findings not only enhanced our understanding of environmental adaptation but also provide novel genetic resources and potential targets for molecular design breeding for cold tolerance in rice.
水稻是易受寒冷胁迫影响的主要作物。鉴定耐寒性的数量性状位点和基因对水稻育种至关重要。在对 540 个水稻品种进行的全基因组关联研究中,确定了 30 个影响幼苗耐寒性的数量性状位点,其中一个位点的致病基因是......。其启动子中的单核苷酸多态性导致了和亚种之间的表达差异。这种有利的单倍型起源于野生稻,有助于水稻向寒冷的生境扩展。这些发现不仅加深了我们对环境适应性的理解,还为水稻耐寒性的分子设计育种提供了新的遗传资源和潜在目标。
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引用次数: 0
Non-separated microspores 1 controls male meiotic callose deposition at the cell plate in rice 非分离小孢子 1 控制水稻细胞板上雄性减数分裂胼胝质的沉积
Pub Date : 2024-08-08 DOI: 10.1016/j.cj.2024.07.009
Haiyuan Chen, Suobing Zhang, Weijie Tang, Jun Tang, Jing Lin, Xianwen Fang, Yunhui Zhang
In flowering plants, callose (-1,3-glucan) plays a vital role in pollen development, especially in the separation and development of microspores. However, the molecular mechanism of callose deposition during rice pollen development remains unclear. In this study, we isolated and characterized a novel rice pollen defective mutant, (), which produced “dyad” or “tetrad” pollen grains. Cytological analysis indicated disrupted interstitial callose deposition at the cell plate of dyads and tetrads in pollens. This disruption caused sporopollenin to be massively deposited outside of the junction where the interstitial callose wall connected with the peripheral callose wall, or unevenly distributed on the interstitial pollen primexine at the late meiosis stage. Consequently, an excess tectum-like layer was formed outside of the junction, connecting with the tectum of two microspores during later developmental stages, which prevented the separation of microspores. Additionally, in the linkage area, the tectum of two microspores gradually fused or degenerated, resulting in a decreased contact area between microspores and the anther locule. Therefore, the defect in callose deposition resulted in unsuccessful separation of microspores, abnormal deposition of pollen exine, and also affected the accumulation of materials in microspores, resulting in pollen semi-sterility. , encoding a callose synthase located in the Golgi body, is ubiquitously expressed in anthers with its peak expression at the young microspore stage. The enzyme activity assay confirmed that NSM1 possesses callose synthase activity, and the enzyme activity in the mutants was significantly reduced. Phylogenetic analysis indicated that NSM1 and its orthologs play a highly conserved role in callose biosynthesis among plant species. Taken together, we propose that NSM1 plays an essential role in male meiotic callose synthesis and later pollen wall development.
在开花植物中,胼胝质(-1,3-葡聚糖)在花粉发育过程中发挥着重要作用,尤其是在小孢子的分离和发育过程中。然而,水稻花粉发育过程中胼胝质沉积的分子机制仍不清楚。在这项研究中,我们分离并鉴定了一种新型水稻花粉缺陷突变体(),该突变体产生 "二联 "或 "四联 "花粉粒。细胞学分析表明,花粉中二联体和四联体细胞板的间质胼胝质沉积中断。这种中断导致孢粉蛋白大量沉积在间质胼胝质壁与外周胼胝质壁连接的交界处外,或在减数分裂后期不均匀地分布在间质花粉原基上。因此,在交界处外形成了一个多余的栉状层,在后期发育阶段与两个小孢子的栉相连,从而阻碍了小孢子的分离。此外,在连接区,两个小孢子的ectum逐渐融合或退化,导致小孢子与花药子房室的接触面积减少。因此,胼胝质沉积缺陷导致小孢子分离不成功,花粉外皮沉积异常,同时也影响了小孢子中物质的积累,造成花粉半衰期。在花药中,位于高尔基体中的一种胼胝质合成酶(MSM)编码在花药中普遍表达,其表达峰值出现在幼小小孢子阶段。酶活性测定证实 NSM1 具有胼胝质合成酶活性,突变体的酶活性显著降低。系统进化分析表明,NSM1 及其直向同源物在植物物种间的胼胝质生物合成中扮演着高度保守的角色。综上所述,我们认为 NSM1 在雄性减数分裂胼胝质合成和后期花粉壁发育过程中发挥着重要作用。
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引用次数: 0
Regulatory mechanisms of iron homeostasis in maize mediated by ZmFIT ZmFIT 介导的玉米铁平衡调控机制
Pub Date : 2024-08-08 DOI: 10.1016/j.cj.2024.06.013
Suzhen Li, Shuai Ma, Zizhao Song, Yu Li, Xiaoqing Liu, Wenzhu Yang, Tianyu Wang, Xiaojin Zhou, Rumei Chen
Regulation of iron homeostasis in maize remains unclear, despite the known roles of FER-Like Fe deficiency-induced transcription factor (FIT) in and rice. ZmFIT, like AtFIT and OsFIT, interacts with iron-related transcription factors 2 (ZmIRO2). Here, we investigate the involvement of in iron homeostasis. Mutant lines exhibiting symptoms of Fe deficiency had reduced shoot iron content. Transcriptome analysis revealed downregulation of Fe deficiency-responsive genes in the roots of a mutant. ZmFIT facilitates the nuclear translocation of ZmIRO2 to activate transcription of downstream genes under Fe-deficient conditions. Our findings suggest that ZmFIT, by interaction with ZmIRO2, mediates iron homeostasis in maize. Notably, the binding and activation mechanisms of ZmFIT resemble those in but differ from those in rice, whereas downstream genes regulated by ZmFIT show similarities to rice but differences from . In brief, ZmFIT, orthgologs of OsFIT and AtFIT in rice and maize, respectively, regulates iron uptake and homeostasis in maize, but with variations.
尽管已知 FER-Like 铁缺乏诱导转录因子(FIT)在玉米和水稻中的作用,但玉米中铁稳态的调控仍不清楚。与 AtFIT 和 OsFIT 一样,ZmFIT 也与铁相关转录因子 2(ZmIRO2)相互作用。在此,我们研究了铁稳态中 ZmFIT 的参与。表现出缺铁症状的突变株的芽铁含量降低。转录组分析显示,突变体根部的缺铁反应基因下调。在缺铁条件下,ZmFIT能促进ZmIRO2的核转位,激活下游基因的转录。我们的研究结果表明,ZmFIT 通过与 ZmIRO2 相互作用,介导了玉米的铁平衡。值得注意的是,ZmFIT的结合和激活机制与水稻相似,但与水稻不同;而受ZmFIT调控的下游基因与水稻相似,但与水稻不同。 总之,ZmFIT分别是水稻和玉米中OsFIT和AtFIT的直系同源物,它调控玉米的铁吸收和稳态,但有差异。
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引用次数: 0
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The Crop Journal
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