Pub Date : 2024-01-27DOI: 10.1093/ornithology/ukae006
Ben J Vernasco, Jamie M Cornelius, Heather E Watts
Many animals rely on photoperiodic and non-photoperiodic environmental cues to gather information and appropriately time life-history stages across the annual cycle, such as reproduction, molt, and migration. Here, we experimentally demonstrate that the reproductive physiology, but not migratory behavior, of captive Pine Siskins (Spinus pinus) responds to both food and social cues during the spring migratory-breeding period. Pine Siskins are a nomadic finch with a highly flexible breeding schedule and, in the spring, free-living Pine Siskins can wander large geographic areas and opportunistically breed. To understand the importance of non-photoperiodic cues to the migratory-breeding transition, we maintained individually housed birds on either a standard or enriched diet in the presence of group-housed heterospecifics or conspecifics experiencing either the standard or enriched diet type. We measured body condition and reproductive development of all Pine Siskins and, among individually housed Pine Siskins, quantified nocturnal migratory restlessness. In group-housed birds, the enriched diet caused increases in body condition and, among females, promoted reproductive development. Among individually housed birds, female reproductive development differed between treatment groups whereas male reproductive development did not. Specifically, individually housed females showed greater reproductive development when presented with conspecifics compared to heterospecifics. The highest rate of female reproductive development, however, was observed among individually housed females provided the enriched diet and maintained with group-housed conspecifics on an enriched diet. Changes in nocturnal migratory restlessness did not vary by treatment group or sex. By manipulating both the physical and social environment, this study demonstrates how multiple environmental cues can affect the timing of transitions between life-history stages with differential responses between sexes and between migratory and reproductive systems.
{"title":"Food and social cues modulate reproductive development but not migratory behavior in a nomadic songbird, the Pine Siskin","authors":"Ben J Vernasco, Jamie M Cornelius, Heather E Watts","doi":"10.1093/ornithology/ukae006","DOIUrl":"https://doi.org/10.1093/ornithology/ukae006","url":null,"abstract":"Many animals rely on photoperiodic and non-photoperiodic environmental cues to gather information and appropriately time life-history stages across the annual cycle, such as reproduction, molt, and migration. Here, we experimentally demonstrate that the reproductive physiology, but not migratory behavior, of captive Pine Siskins (Spinus pinus) responds to both food and social cues during the spring migratory-breeding period. Pine Siskins are a nomadic finch with a highly flexible breeding schedule and, in the spring, free-living Pine Siskins can wander large geographic areas and opportunistically breed. To understand the importance of non-photoperiodic cues to the migratory-breeding transition, we maintained individually housed birds on either a standard or enriched diet in the presence of group-housed heterospecifics or conspecifics experiencing either the standard or enriched diet type. We measured body condition and reproductive development of all Pine Siskins and, among individually housed Pine Siskins, quantified nocturnal migratory restlessness. In group-housed birds, the enriched diet caused increases in body condition and, among females, promoted reproductive development. Among individually housed birds, female reproductive development differed between treatment groups whereas male reproductive development did not. Specifically, individually housed females showed greater reproductive development when presented with conspecifics compared to heterospecifics. The highest rate of female reproductive development, however, was observed among individually housed females provided the enriched diet and maintained with group-housed conspecifics on an enriched diet. Changes in nocturnal migratory restlessness did not vary by treatment group or sex. By manipulating both the physical and social environment, this study demonstrates how multiple environmental cues can affect the timing of transitions between life-history stages with differential responses between sexes and between migratory and reproductive systems.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139581943","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-25DOI: 10.1093/ornithology/ukae005
Michał T Jezierski
The “island syndrome” refers to similarity in the biology of island organisms, but its generality is questionable, as the scope of species and traits examined are often limited. Here, I show that birds breeding exclusively on islands (breeding island endemics) evolved smaller clutches, using a dataset of 4,530 bird species. Using an inclusive definition of a breeding island endemic, which also encompasses migratory species and seabirds, I examine the evolution of clutch sizes in island breeding species using phylogenetic generalized linear models. Across disparate phylogenetic hypotheses, and after accounting for biological and geographical co-variables, I show that breeding island endemic landbirds (470 species) evolved smaller clutch sizes than continental breeding species (3,818 species). I show that the evolution of clutch size follows the expectations of the island syndrome, as among breeding island endemic landbirds there is a positive relationship between clutch size and breeding range area. Finally, I reinforce the view that the island syndrome is a general pattern in birds, spanning diverse phylogenetic and ecological groups, by showing that in a seabird-only dataset (242 species), breeding island endemic seabirds show evolution of smaller clutch sizes. In a model of the full dataset of both landbirds and seabirds (4,530 species) there was no evidence of an interaction of being a seabird with breeding island endemicity, showing that seabirds and landbirds respond in the same way. This study, using more than 40% of all bird species, provides the first evidence of a general evolutionary response in a life-history trait, clearly showing the island syndrome as a general evolutionary tendency associated with island environments.
{"title":"Birds that breed exclusively on islands have smaller clutches","authors":"Michał T Jezierski","doi":"10.1093/ornithology/ukae005","DOIUrl":"https://doi.org/10.1093/ornithology/ukae005","url":null,"abstract":"The “island syndrome” refers to similarity in the biology of island organisms, but its generality is questionable, as the scope of species and traits examined are often limited. Here, I show that birds breeding exclusively on islands (breeding island endemics) evolved smaller clutches, using a dataset of 4,530 bird species. Using an inclusive definition of a breeding island endemic, which also encompasses migratory species and seabirds, I examine the evolution of clutch sizes in island breeding species using phylogenetic generalized linear models. Across disparate phylogenetic hypotheses, and after accounting for biological and geographical co-variables, I show that breeding island endemic landbirds (470 species) evolved smaller clutch sizes than continental breeding species (3,818 species). I show that the evolution of clutch size follows the expectations of the island syndrome, as among breeding island endemic landbirds there is a positive relationship between clutch size and breeding range area. Finally, I reinforce the view that the island syndrome is a general pattern in birds, spanning diverse phylogenetic and ecological groups, by showing that in a seabird-only dataset (242 species), breeding island endemic seabirds show evolution of smaller clutch sizes. In a model of the full dataset of both landbirds and seabirds (4,530 species) there was no evidence of an interaction of being a seabird with breeding island endemicity, showing that seabirds and landbirds respond in the same way. This study, using more than 40% of all bird species, provides the first evidence of a general evolutionary response in a life-history trait, clearly showing the island syndrome as a general evolutionary tendency associated with island environments.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139581682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-18DOI: 10.1093/ornithology/ukae004
Rafael Dantas Lima
A survey of recent taxonomic studies of birds that included acoustic trait analyses reveals that most studies have not archived the sound recordings that support their conclusions, despite the current availability of online, publicly available collections of bird sounds. In addition, bird sound recordings have often been cited without unique accession numbers that permit unambiguous sample identification and in considerably less detail than other types of samples, such as museum specimens or genetic samples. Both this lack of data openness and the way acoustic samples have been cited undermine the methodological rigor that otherwise characterizes many of these studies, and much invaluable biological data are likely to be lost over time if bird sound recordings are not archived in long-term collections. I suggest that these problems can be easily addressed by embracing the open data movement and adopting some best practices that are widely used in other fields. Just as study skins and DNA sequences are required to be deposited in publicly available collections such as natural history museums and the GenBank, respectively, sound recordings used in taxonomic studies with acoustic trait analyses should be archived in publicly available collections as a condition for publication of associated results. Authors of taxonomic studies involving sounds should archive their sound recordings and provide unique accession numbers for sound recordings examined, and journals and reviewers should ensure that authors have done so. By embracing the open data movement, research studying avian acoustic signals is expected to become more transparent, reproducible, and useful.
对近期包括声学特征分析在内的鸟类分类研究的调查显示，尽管目前有在线公开的鸟类声音集合，但大多数研究都没有将支持其结论的声音记录存档。此外，引用鸟类声音记录时往往没有唯一的入库编号，因此无法对样本进行明确识别，其详细程度也远远低于博物馆标本或基因样本等其他类型的样本。这种缺乏数据开放性的情况和声学样本的引用方式都破坏了许多研究方法的严谨性，如果不对鸟类声音记录进行长期保存，许多宝贵的生物数据很可能会随着时间的推移而丢失。我认为，这些问题可以通过拥抱开放数据运动和采用其他领域广泛使用的一些最佳实践来轻松解决。正如研究皮肤和 DNA 序列必须分别存放在自然历史博物馆和 GenBank 等公开资料库中一样，声学性状分析分类研究中使用的声音记录也应存档在公开资料库中，作为发表相关结果的条件。涉及声音的分类学研究的作者应将其声音记录归档，并为所研究的声音记录提供唯一的入库编号，期刊和审稿人应确保作者已这样做。通过拥抱开放数据运动，鸟类声学信号研究有望变得更加透明、可复制和有用。
{"title":"The need for proper archiving and referencing of sound recordings in taxonomic studies of birds","authors":"Rafael Dantas Lima","doi":"10.1093/ornithology/ukae004","DOIUrl":"https://doi.org/10.1093/ornithology/ukae004","url":null,"abstract":"A survey of recent taxonomic studies of birds that included acoustic trait analyses reveals that most studies have not archived the sound recordings that support their conclusions, despite the current availability of online, publicly available collections of bird sounds. In addition, bird sound recordings have often been cited without unique accession numbers that permit unambiguous sample identification and in considerably less detail than other types of samples, such as museum specimens or genetic samples. Both this lack of data openness and the way acoustic samples have been cited undermine the methodological rigor that otherwise characterizes many of these studies, and much invaluable biological data are likely to be lost over time if bird sound recordings are not archived in long-term collections. I suggest that these problems can be easily addressed by embracing the open data movement and adopting some best practices that are widely used in other fields. Just as study skins and DNA sequences are required to be deposited in publicly available collections such as natural history museums and the GenBank, respectively, sound recordings used in taxonomic studies with acoustic trait analyses should be archived in publicly available collections as a condition for publication of associated results. Authors of taxonomic studies involving sounds should archive their sound recordings and provide unique accession numbers for sound recordings examined, and journals and reviewers should ensure that authors have done so. By embracing the open data movement, research studying avian acoustic signals is expected to become more transparent, reproducible, and useful.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139495742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-13DOI: 10.1093/ornithology/ukad055
Eli S Bridge, Wesley T Honeycutt, Angela J Chen, Riley Miller, Jeffrey F Kelly
Migrating birds often fly in group formations during the daytime, whereas at night, it is generally presumed that they fly singly. However, it is difficult to quantify group behavior during nocturnal migration as there are few means of directly observing interactions among individuals. We employed an automated form of moonwatching to estimate percentages of birds that appear to migrate in groups during the night within the Central Flyway of North America. We compared percentages of birds in groups across the spring and fall and examined overnight temporal patterns of group behavior. We found groups were rare in both seasons, never exceeding 10% of birds observed, and were almost nonexistent during the fall. We also observed an overnight pattern of group behavior in the spring wherein groups were more commonly detected early in the night and again just before migration activity ceased. This finding may be related to changes in species composition of migrants throughout the night, or alternatively, it suggests that group formation may be associated with flocking activity on the ground as groups are most prevalent when birds begin and end a night of migration.
{"title":"Social behavior among nocturnally migrating birds revealed by automated moonwatching","authors":"Eli S Bridge, Wesley T Honeycutt, Angela J Chen, Riley Miller, Jeffrey F Kelly","doi":"10.1093/ornithology/ukad055","DOIUrl":"https://doi.org/10.1093/ornithology/ukad055","url":null,"abstract":"Migrating birds often fly in group formations during the daytime, whereas at night, it is generally presumed that they fly singly. However, it is difficult to quantify group behavior during nocturnal migration as there are few means of directly observing interactions among individuals. We employed an automated form of moonwatching to estimate percentages of birds that appear to migrate in groups during the night within the Central Flyway of North America. We compared percentages of birds in groups across the spring and fall and examined overnight temporal patterns of group behavior. We found groups were rare in both seasons, never exceeding 10% of birds observed, and were almost nonexistent during the fall. We also observed an overnight pattern of group behavior in the spring wherein groups were more commonly detected early in the night and again just before migration activity ceased. This finding may be related to changes in species composition of migrants throughout the night, or alternatively, it suggests that group formation may be associated with flocking activity on the ground as groups are most prevalent when birds begin and end a night of migration.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139465340","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-12DOI: 10.1093/ornithology/ukae001
Nicholas T Vinciguerra, Jenna M McCullough, Kevin J Burns
We assessed correlations between speciation rate and bill morphology (size, shape, and evolutionary rate) in a diverse and broadly distributed songbird radiation, the tanagers (Thraupidae). Our analyses showed that bill size, shape, and their evolutionary rates are not correlated with speciation rate. However, we did find evidence that each axis of variation in bill morphology diversifies at speciation events interspersed with periods of gradual evolution, consistent with a punctuated equilibrium model of character change. To determine correlations, we incorporated a time-calibrated molecular phylogeny and high-resolution 3-dimensional surface scans of bill structure from museum study skins. Overall, our findings suggest that bill size and shape diversify in association with the speciation process, but not through any effect on the rate of speciation. Previous studies have shown other traits, such as song, ecological niche, and plumage do influence speciation and, ultimately, species richness in tanagers.
{"title":"Punctuated evolution of bill morphology in the largest family of songbirds (Thraupidae)","authors":"Nicholas T Vinciguerra, Jenna M McCullough, Kevin J Burns","doi":"10.1093/ornithology/ukae001","DOIUrl":"https://doi.org/10.1093/ornithology/ukae001","url":null,"abstract":"We assessed correlations between speciation rate and bill morphology (size, shape, and evolutionary rate) in a diverse and broadly distributed songbird radiation, the tanagers (Thraupidae). Our analyses showed that bill size, shape, and their evolutionary rates are not correlated with speciation rate. However, we did find evidence that each axis of variation in bill morphology diversifies at speciation events interspersed with periods of gradual evolution, consistent with a punctuated equilibrium model of character change. To determine correlations, we incorporated a time-calibrated molecular phylogeny and high-resolution 3-dimensional surface scans of bill structure from museum study skins. Overall, our findings suggest that bill size and shape diversify in association with the speciation process, but not through any effect on the rate of speciation. Previous studies have shown other traits, such as song, ecological niche, and plumage do influence speciation and, ultimately, species richness in tanagers.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139461079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-12DOI: 10.1093/ornithology/ukae002
Katarzyna Janas, Irene Di Lecce, Marta Szulkin, Joanna Sudyka
Most of our knowledge of secondary hole-nesting birds comes from populations breeding in human-provided nestboxes, yet these might differ from natural cavities in a number of parameters, including internal dimensions or microclimate, leading to differences in reproductive ecology. Here, we demonstrate differences in plumage coloration, an important visual signal of individual quality, in Blue Tit (Cyanistes caeruleus) and Great Tit (Parus major) nestlings raised in natural cavities and nestboxes. For this study, we collected feather samples over 2 breeding seasons and applied reflectance spectrophotometry to calculate color metrics. Carotenoid chroma was higher in nestbox-reared Blue Tits, whereas brightness was higher in nestbox-reared Great Tits (with a similar tendency for Blue Tits). The latter result might be explained by the better nutritional condition of Great Tit nestlings raised in nestboxes. Furthermore, we found no evidence for preference of adults expressing more elaborate plumage towards a specific cavity type in either species. Consequently, we assume that differences in nestling plumage reported here are driven by rearing conditions (nestboxes vs. natural cavities) and not by differences in plumage-based parental quality. Our study adds to the growing body of evidence confirming that anthropogenic environmental modifiers, such as nestboxes, might influence avian physiology and the resulting phenotype.
{"title":"Plumage coloration differs between offspring raised in natural cavities and nestboxes","authors":"Katarzyna Janas, Irene Di Lecce, Marta Szulkin, Joanna Sudyka","doi":"10.1093/ornithology/ukae002","DOIUrl":"https://doi.org/10.1093/ornithology/ukae002","url":null,"abstract":"Most of our knowledge of secondary hole-nesting birds comes from populations breeding in human-provided nestboxes, yet these might differ from natural cavities in a number of parameters, including internal dimensions or microclimate, leading to differences in reproductive ecology. Here, we demonstrate differences in plumage coloration, an important visual signal of individual quality, in Blue Tit (Cyanistes caeruleus) and Great Tit (Parus major) nestlings raised in natural cavities and nestboxes. For this study, we collected feather samples over 2 breeding seasons and applied reflectance spectrophotometry to calculate color metrics. Carotenoid chroma was higher in nestbox-reared Blue Tits, whereas brightness was higher in nestbox-reared Great Tits (with a similar tendency for Blue Tits). The latter result might be explained by the better nutritional condition of Great Tit nestlings raised in nestboxes. Furthermore, we found no evidence for preference of adults expressing more elaborate plumage towards a specific cavity type in either species. Consequently, we assume that differences in nestling plumage reported here are driven by rearing conditions (nestboxes vs. natural cavities) and not by differences in plumage-based parental quality. Our study adds to the growing body of evidence confirming that anthropogenic environmental modifiers, such as nestboxes, might influence avian physiology and the resulting phenotype.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139461310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-12DOI: 10.1093/ornithology/ukad060
Kristina L Cockle, Milka R Gomez, Carlos A Ferreyra, Facundo G Di Sallo, Alejandro Bodrati
To understand the evolution, life-history tradeoffs, and population ecology of cavity nesters, it is critical to identify the avian lineages and circumstances in which birds excavate tree cavities. Woodcreepers (Furnariidae: Dendrocolaptinae; 56 species) are considered non-excavators dependent on existing cavities. We overturn this assumption by providing definitive evidence that the Lesser Woodcreeper (Xiphorhynchus fuscus, 23 g) is a facultative tree-cavity excavator. From 2007 to 2022 in the Atlantic forest of Misiones, Argentina, Lesser Woodcreepers nested in preexisting tree crevices (4 nests), or excavated cavities in trunks of large-diameter trees in advanced stages of decay (mean diameter: 58 cm, range: 22–121 cm, 22 nests). Nest entrances were vertically elongated and chambers were usually pocket like, excavated in the exterior of the trees (sapwood), with floors that curved along the trees’ circumference. Excavating woodcreepers pulled out elongated pieces of spongy, fibrous decayed wood, tapping only when inside cavities. Published and online photographs of nests of Xiphorhynchus species suggest that excavation may be widespread in the genus. Our observations that woodcreepers tore out elongated pieces of spongy wood (rather than hammering) are consistent with the idea that their long, thin bills are more resistant to torsion and less resistant to impact compared to the stouter bills of other excavators in Passeriformes and Piciformes. Research has tended to focus on birds with chisel-shaped bills, perforating harder sapwood to create nesting chambers in the center of heartrot-infected trees (resulting in typical woodpecker cavities, with circular floors). We hypothesize that Lesser Woodcreepers have adopted an alternative strategy, selecting large trunks with soft outer wood (sapwood), stopping their excavation radially if they reach harder wood, and then expanding the nest chamber laterally. Furnariidae may offer a useful model family for understanding ecological and evolutionary factors that influence cavity excavation. We provide a Spanish translation in Supplementary Material.
{"title":"Lesser Woodcreepers excavate nest cavities in trees","authors":"Kristina L Cockle, Milka R Gomez, Carlos A Ferreyra, Facundo G Di Sallo, Alejandro Bodrati","doi":"10.1093/ornithology/ukad060","DOIUrl":"https://doi.org/10.1093/ornithology/ukad060","url":null,"abstract":"To understand the evolution, life-history tradeoffs, and population ecology of cavity nesters, it is critical to identify the avian lineages and circumstances in which birds excavate tree cavities. Woodcreepers (Furnariidae: Dendrocolaptinae; 56 species) are considered non-excavators dependent on existing cavities. We overturn this assumption by providing definitive evidence that the Lesser Woodcreeper (Xiphorhynchus fuscus, 23 g) is a facultative tree-cavity excavator. From 2007 to 2022 in the Atlantic forest of Misiones, Argentina, Lesser Woodcreepers nested in preexisting tree crevices (4 nests), or excavated cavities in trunks of large-diameter trees in advanced stages of decay (mean diameter: 58 cm, range: 22–121 cm, 22 nests). Nest entrances were vertically elongated and chambers were usually pocket like, excavated in the exterior of the trees (sapwood), with floors that curved along the trees’ circumference. Excavating woodcreepers pulled out elongated pieces of spongy, fibrous decayed wood, tapping only when inside cavities. Published and online photographs of nests of Xiphorhynchus species suggest that excavation may be widespread in the genus. Our observations that woodcreepers tore out elongated pieces of spongy wood (rather than hammering) are consistent with the idea that their long, thin bills are more resistant to torsion and less resistant to impact compared to the stouter bills of other excavators in Passeriformes and Piciformes. Research has tended to focus on birds with chisel-shaped bills, perforating harder sapwood to create nesting chambers in the center of heartrot-infected trees (resulting in typical woodpecker cavities, with circular floors). We hypothesize that Lesser Woodcreepers have adopted an alternative strategy, selecting large trunks with soft outer wood (sapwood), stopping their excavation radially if they reach harder wood, and then expanding the nest chamber laterally. Furnariidae may offer a useful model family for understanding ecological and evolutionary factors that influence cavity excavation. We provide a Spanish translation in Supplementary Material.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139461311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-11DOI: 10.1093/ornithology/ukae003
Philipp H Boersch-Supan, Hugh J Hanmer, Robert A Robinson
Molt is an essential life-history event in birds and many mammals, as maintenance of feathers and fur is critical for survival. Despite this molt remains an understudied life-history event. Non-standard statistical techniques are required to estimate the phenology of molt from observations of plumage or pelage state, and existing molt phenology models have strict sampling requirements that can be difficult to meet under real-world conditions. We present an extended modelling framework that can accommodate features of real-world molt datasets, such as re-encounters of individuals, misclassified molt states, and/or molt state-dependent sampling bias. We demonstrate that such features can lead to biased inferences when using existing molt phenology models, and show that our model extensions can improve inferences about molt phenology under a wide range of sampling conditions. We hope that our novel modelling framework removes barriers for modelling molt phenology data from real-world datasets and thereby further facilitates the uptake of appropriate statistical methods for such data. Although we focus on molt, the modelling framework is applicable to other phenological processes that can be recorded using either ordered categories or approximately linear progress scores.
{"title":"Extended molt phenology models improve inferences about molt duration and timing","authors":"Philipp H Boersch-Supan, Hugh J Hanmer, Robert A Robinson","doi":"10.1093/ornithology/ukae003","DOIUrl":"https://doi.org/10.1093/ornithology/ukae003","url":null,"abstract":"Molt is an essential life-history event in birds and many mammals, as maintenance of feathers and fur is critical for survival. Despite this molt remains an understudied life-history event. Non-standard statistical techniques are required to estimate the phenology of molt from observations of plumage or pelage state, and existing molt phenology models have strict sampling requirements that can be difficult to meet under real-world conditions. We present an extended modelling framework that can accommodate features of real-world molt datasets, such as re-encounters of individuals, misclassified molt states, and/or molt state-dependent sampling bias. We demonstrate that such features can lead to biased inferences when using existing molt phenology models, and show that our model extensions can improve inferences about molt phenology under a wide range of sampling conditions. We hope that our novel modelling framework removes barriers for modelling molt phenology data from real-world datasets and thereby further facilitates the uptake of appropriate statistical methods for such data. Although we focus on molt, the modelling framework is applicable to other phenological processes that can be recorded using either ordered categories or approximately linear progress scores.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139469961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-19DOI: 10.1093/ornithology/ukad062
Jiaying Yang, Bryan C Carstens, Kaiya L Provost
Previous work has demonstrated that there is extensive variation in the songs of White-crowned Sparrow (Zonotrichia leucophrys) throughout the species range, including between neighboring (and genetically distinct) subspecies Z. l. nuttalli and Z. l. pugetensis. Using a machine learning approach to bioacoustic analysis, we demonstrate that variation in song is correlated with year of recording (representing cultural drift), geographic distance, and climatic differences, but the response is subspecies- and season-specific. Automated machine learning methods of bird song annotation can process large datasets more efficiently, allowing us to examine 1,913 recordings across ~60 years. We utilize a recently published artificial neural network to automatically annotate White-crowned Sparrow vocalizations. By analyzing differences in syllable usage and composition, we recapitulate the known pattern where Z. l. nuttalli and Z. l. pugetensis have significantly different songs. Our results are consistent with the interpretation that these differences are caused by the changes in characteristics of syllables in the White-crowned Sparrow repertoire. This supports the hypothesis that the evolution of vocalization behavior is affected by the environment, in addition to population structure.
以前的研究表明，白冠麻雀（Zonotrichia leucophrys）的鸣声在整个物种分布区存在广泛的差异，包括相邻亚种 Z. l. nuttalli 和 Z. l. pugetensis 之间的差异。利用生物声学分析的机器学习方法，我们证明了鸟鸣的变化与记录年份（代表文化漂移）、地理距离和气候差异相关，但其反应是亚种和季节特异性的。鸟类鸣唱注释的自动化机器学习方法可以更高效地处理大型数据集，使我们能够研究约 60 年间的 1,913 次录音。我们利用最近发表的人工神经网络自动注释白冠麻雀的发声。通过分析音节用法和构成的差异，我们再现了已知的模式，即 Z. l. nuttalli 和 Z. l. pugetensis 的鸣声有显著差异。我们的结果与以下解释一致，即这些差异是由白冠麻雀曲目中音节特征的变化引起的。这支持了发声行为的进化除受种群结构影响外，还受环境影响的假说。
{"title":"Machine learning reveals that climate, geography, and cultural drift all predict bird song variation in coastal Zonotrichia leucophrys","authors":"Jiaying Yang, Bryan C Carstens, Kaiya L Provost","doi":"10.1093/ornithology/ukad062","DOIUrl":"https://doi.org/10.1093/ornithology/ukad062","url":null,"abstract":"Previous work has demonstrated that there is extensive variation in the songs of White-crowned Sparrow (Zonotrichia leucophrys) throughout the species range, including between neighboring (and genetically distinct) subspecies Z. l. nuttalli and Z. l. pugetensis. Using a machine learning approach to bioacoustic analysis, we demonstrate that variation in song is correlated with year of recording (representing cultural drift), geographic distance, and climatic differences, but the response is subspecies- and season-specific. Automated machine learning methods of bird song annotation can process large datasets more efficiently, allowing us to examine 1,913 recordings across ~60 years. We utilize a recently published artificial neural network to automatically annotate White-crowned Sparrow vocalizations. By analyzing differences in syllable usage and composition, we recapitulate the known pattern where Z. l. nuttalli and Z. l. pugetensis have significantly different songs. Our results are consistent with the interpretation that these differences are caused by the changes in characteristics of syllables in the White-crowned Sparrow repertoire. This supports the hypothesis that the evolution of vocalization behavior is affected by the environment, in addition to population structure.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138821576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-12DOI: 10.1093/ornithology/ukad061
Abigail A Kimmitt, Teresa M Pegan, Andrew W Jones, Kevin Winker, Benjamin M Winger
In high-latitude species with high dispersal ability, such as long-distance migratory birds, populations are often assumed to exhibit little genetic structure due to high gene flow or recent postglacial expansion. We sequenced over 120 low-coverage whole genomes from across the breeding range of a long-distance migratory bird, the Veery (Catharus fuscescens), revealing strong evidence for isolation by distance. Additionally, we found distinct genetic structure between boreal, western montane U.S., and southern Appalachian sampling regions. We suggest that population genetic structure in this highly migratory species is detectable with the high resolution afforded by whole-genomic data because, similar to many migratory birds, the Veery exhibits high breeding-site fidelity, which likely limits gene flow. Resolution of isolation by distance across the breeding range was sufficient to assign likely breeding origins of individuals sampled in this species’ poorly understood South American nonbreeding range, demonstrating the potential to assess migratory connectivity in this species using genomic data. As the Veery’s breeding range extends across both historically glaciated and unglaciated regions in North America, we also evaluated whether contemporary patterns of structure and genetic diversity are consistent with historical population isolation in glacial refugia. We found that patterns of genetic diversity did not support southern montane regions (southern Appalachians or western U.S. mountains) as glacial refugia. Overall, our findings suggest that isolation by distance yields subtle associations between genetic structure and geography across the breeding range of this highly vagile species even in the absence of obvious historical vicariance or contemporary barriers to dispersal.
{"title":"How Veeries vary: Whole genome sequencing resolves genetic structure in a long-distance migratory bird","authors":"Abigail A Kimmitt, Teresa M Pegan, Andrew W Jones, Kevin Winker, Benjamin M Winger","doi":"10.1093/ornithology/ukad061","DOIUrl":"https://doi.org/10.1093/ornithology/ukad061","url":null,"abstract":"In high-latitude species with high dispersal ability, such as long-distance migratory birds, populations are often assumed to exhibit little genetic structure due to high gene flow or recent postglacial expansion. We sequenced over 120 low-coverage whole genomes from across the breeding range of a long-distance migratory bird, the Veery (Catharus fuscescens), revealing strong evidence for isolation by distance. Additionally, we found distinct genetic structure between boreal, western montane U.S., and southern Appalachian sampling regions. We suggest that population genetic structure in this highly migratory species is detectable with the high resolution afforded by whole-genomic data because, similar to many migratory birds, the Veery exhibits high breeding-site fidelity, which likely limits gene flow. Resolution of isolation by distance across the breeding range was sufficient to assign likely breeding origins of individuals sampled in this species’ poorly understood South American nonbreeding range, demonstrating the potential to assess migratory connectivity in this species using genomic data. As the Veery’s breeding range extends across both historically glaciated and unglaciated regions in North America, we also evaluated whether contemporary patterns of structure and genetic diversity are consistent with historical population isolation in glacial refugia. We found that patterns of genetic diversity did not support southern montane regions (southern Appalachians or western U.S. mountains) as glacial refugia. Overall, our findings suggest that isolation by distance yields subtle associations between genetic structure and geography across the breeding range of this highly vagile species even in the absence of obvious historical vicariance or contemporary barriers to dispersal.","PeriodicalId":501265,"journal":{"name":"The Auk","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138580787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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