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Sperm-Specific CatSper is Not Conserved in All Vertebrates and May Not be the Only Progesterone-Responsive Ion Channel Present in Sperm. 精子特异性 CatSper 并非在所有脊椎动物中都是保守的,也可能不是精子中唯一的孕酮反应性离子通道。
IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-07-06 DOI: 10.1007/s00232-024-00316-1
Nishant Kumar Dubey, Vikash Kumar, Chandan Goswami

Progesterone (P4) acts as a key conserved signalling molecule in vertebrate reproduction. P4 is especially important for mature sperm physiology and subsequent reproductive success. "CatSpermasome", a multi-unit molecular complex, has been suggested to be the main if not the only P4-responsive atypical Ca2+-ion channel present in mature sperm. Altogether, here we analyse the protein sequences of CatSper1-4 from more than 500 vertebrates ranging from early fishes to humans. CatSper1 becomes longer in mammals due to sequence gain mainly at the N-terminus. Overall the conservation of full-length CatSper1-4 as well as the individual TM regions remain low. The lipid-water-interface residues (i.e. a 5 amino acid stretch sequence present on both sides of each TM region) also remain highly diverged. No specific patterns of amino acid distributions were observed. The total frequency of positively charged, negatively charged or their ratios do not follow in any specific pattern. Similarly, the frequency of total hydrophobic, total hydrophilic residues or even their ratios remain random and do not follow any specific pattern. We noted that the CatSper1-4 genes are missing in amphibians and the CatSper1 gene is missing in birds. The high variability of CatSper1-4 and gene-loss in certain clades indicate that the "CatSpermasome" is not the only P4-responsive ion channel. Data indicate that the molecular evolution of CatSper is mostly guided by diverse hydrophobic ligands rather than only P4. The comparative data also suggest possibilities of other Ca2+-channel/s in vertebrate sperm that can also respond to P4.

黄体酮(P4)是脊椎动物生殖过程中的一种关键的保守信号分子。P4 对成熟精子的生理机能和随后的生殖成功尤为重要。"CatSpermasome "是一种多单元分子复合物,被认为是成熟精子中主要的(如果不是唯一的)P4 响应非典型 Ca2+ 离子通道。在这里,我们分析了从早期鱼类到人类的 500 多种脊椎动物的 CatSper1-4 蛋白序列。在哺乳动物中,CatSper1 的长度变长,主要是由于 N 端的序列增益。总体而言,全长 CatSper1-4 以及单个 TM 区域的保存率仍然很低。脂水界面残基(即存在于每个 TM 区域两侧的 5 个氨基酸延伸序列)也保持高度差异。没有观察到特定的氨基酸分布模式。带正电荷、带负电荷的总频率或它们的比例没有任何特定的模式。同样,总疏水残基、总亲水残基的频率,甚至它们的比例也仍然是随机的,没有遵循任何特定的模式。我们注意到,两栖动物中缺少 CatSper1-4 基因,鸟类中缺少 CatSper1 基因。CatSper1-4的高度变异性和某些支系的基因缺失表明,"CatSpermasome "并不是唯一的P4反应离子通道。数据表明,CatSper 的分子进化主要受多种疏水配体的引导,而不仅仅是 P4。比较数据还表明,脊椎动物精子中可能存在其他也能对 P4 作出反应的 Ca2+ 通道。
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引用次数: 0
N-Glycosylation Deficiency in Transgene α7 nAChR and RIC3 Expressing CHO Cells Without NACHO. 无 NACHO 的转基因 α7 nAChR 和 RIC3 表达 CHO 细胞中的 N-糖基化缺陷。
IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-07-05 DOI: 10.1007/s00232-024-00317-0
Sabrina Brockmöller, Lara Maria Molitor, Thomas Seeger, Franz Worek, Simone Rothmiller

The human neuronal nicotinic acetylcholine receptor α7 (nAChR) is an important target implicated in diseases like Alzheimer's or Parkinson's, as well as a validated target for drug discovery. For α7 nAChR model systems, correct folding and ion influx functions are essential. Two chaperones, resistance to inhibitors of cholinesterase 3 (RIC3) and novel nAChR regulator (NACHO), enhance the assembly and function of α7 nAChR. This study investigates the consequence of NACHO absence on α7 nAChR expression and function. Therefore, the sequences of human α7 nAChR and human RIC3 were transduced in Chinese hamster ovary (CHO) cells. Protein expression and function of α7 nAChR were confirmed by Western blot and voltage clamp, respectively. Cellular viability was assessed by cell proliferation and lactate dehydrogenase assays. Intracellular and extracellular expression were determined by in/on-cell Western, compared with another nAChR subtype by novel cluster fluorescence-linked immunosorbent assay, and N-glycosylation efficiency was assessed by glycosylation digest. The transgene CHO cell line showed expected protein expression and function for α7 nAChR and cell viability was barely influenced by overexpression. While intracellular levels of α7 nAChR were as anticipated, plasma membrane insertion was low. The glycosylation digest revealed no appreciable N-glycosylation product. This study demonstrates a stable and functional cell line expressing α7 nAChR, whose protein expression, function, and viability are not affected by the absence of NACHO. The reduced plasma membrane insertion of α7 nAChR, combined with incorrect matured N-glycosylation at the Golgi apparatus, suggests a loss of recognition signal for lectin sorting.

人类神经元烟碱乙酰胆碱受体α7(nAChR)是与阿尔茨海默氏症或帕金森氏症等疾病有关的重要靶点,也是药物发现的有效靶点。对于 α7 nAChR 模型系统来说,正确的折叠和离子流入功能至关重要。抗胆碱酯酶抑制剂 3(RIC3)和新型 nAChR 调节剂(NACHO)这两种伴侣素能增强 α7 nAChR 的组装和功能。本研究探讨了 NACHO 缺失对 α7 nAChR 表达和功能的影响。因此,将人α7 nAChR和人RIC3的序列转导到中国仓鼠卵巢(CHO)细胞中。通过 Western 印迹和电压钳分别证实了 α7 nAChR 的蛋白表达和功能。细胞增殖和乳酸脱氢酶测定评估了细胞活力。细胞内和细胞外表达通过细胞内/细胞外 Western 检测法确定,与另一种 nAChR 亚型的比较通过新型簇荧光连接免疫吸附检测法确定,N-糖基化效率通过糖基化消化法评估。转基因 CHO 细胞系显示了 α7 nAChR 预期的蛋白表达和功能,细胞活力几乎不受过表达的影响。虽然细胞内的α7 nAChR水平符合预期,但质膜插入率很低。糖基化消化显示没有明显的 N-糖基化产物。本研究证明了一种表达α7 nAChR的稳定和功能性细胞系,其蛋白表达、功能和活力不受NACHO缺失的影响。α7 nAChR的质膜插入减少,再加上高尔基体上不正确的成熟N-糖基化,表明凝集素分选的识别信号丧失。
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引用次数: 0
Isolated Cardiac Ryanodine Receptor Function Varies Between Mammals. 不同哺乳动物的孤立心脏瑞诺丁受体功能各不相同
IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-01-29 DOI: 10.1007/s00232-023-00301-0
Catherine Carvajal, Jiajie Yan, Alma Nani, Jaime DeSantiago, Xiaoping Wan, Isabelle Deschenes, Xun Ai, Michael Fill

Concerted robust opening of cardiac ryanodine receptors' (RyR2) Ca2+ release 1oplasmic reticulum (SR) is fundamental for normal systolic cardiac function. During diastole, infrequent spontaneous RyR2 openings mediate the SR Ca2+ leak that normally constrains SR Ca2+ load. Abnormal large diastolic RyR2-mediated Ca2+ leak events can cause delayed after depolarizations (DADs) and arrhythmias. The RyR2-associated mechanisms underlying these processes are being extensively studied at multiple levels utilizing various model animals. Since there are well-described species-specific differences in cardiac intracellular Ca2+ handing in situ, we tested whether or not single RyR2 function in vitro retains this species specificity. We isolated RyR2-rich heavy SR microsomes from mouse, rat, rabbit, and human ventricular muscle and quantified RyR2 function using identical solutions and methods. The single RyR2 cytosolic Ca2+ sensitivity was similar across these species. However, there were significant species differences in single RyR2 mean open times in both systole and diastole-like solutions. In diastole-like solutions, single rat/mouse RyR2 open probability and frequency of long openings (> 6 ms) were similar, but these values were significantly greater than those of either single rabbit or human RyR2s. We propose these in vitro single RyR2 functional differences across species stem from the species-specific RyR2 regulatory environment present in the source tissue. Our results show the single rabbit RyR2 functional attributes, particularly in diastole-like conditions, replicate those of single human RyR2 best among the species tested.

心脏雷诺丁受体(RyR2)Ca2+释放1质网(SR)的协同强力开放是心脏正常收缩功能的基础。在舒张期,不频繁的自发 RyR2 开放介导了 SR Ca2+ 泄漏,而这种泄漏通常会限制 SR Ca2+ 负荷。不正常的大量舒张期 RyR2 介导的 Ca2+ 泄漏事件可导致延迟去极化(DAD)和心律失常。目前正在利用各种模式动物从多个层面广泛研究这些过程的 RyR2 相关机制。由于心脏细胞内 Ca2+ 原位处理存在物种特异性差异,我们测试了体外单一 RyR2 功能是否保留了这种物种特异性。我们从小鼠、大鼠、兔子和人的心室肌肉中分离出富含 RyR2 的重 SR 微粒体,并使用相同的溶液和方法对 RyR2 的功能进行了量化。这些物种的单一 RyR2 胞质 Ca2+ 敏感性相似。然而,在类收缩溶液和类舒张溶液中,单个 RyR2 的平均开放时间存在明显的物种差异。在舒张样溶液中,单个大鼠/小鼠 RyR2 的开放概率和长开放(> 6 毫秒)频率相似,但这些值明显高于单个兔或人 RyR2。我们认为,这些体外单个 RyR2 在不同物种间的功能差异源于源组织中存在的物种特异性 RyR2 调节环境。我们的结果表明,在所测试的物种中,单个兔 RyR2 的功能属性,尤其是在类舒张条件下,与单个人 RyR2 的功能属性复制得最好。
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引用次数: 0
Schisandrin B Alleviates LPS Induced Mitochondrial Damage in C28I2 Cells. 五味子异黄酮 B 可缓解 LPS 诱导的 C28I2 细胞线粒体损伤。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-01-29 DOI: 10.1007/s00232-023-00299-5
Fei Hu, WenJie Hu, Hongming Xu

Osteoarthritis is a common joint disease characterized by damage to the joint cartilage that occurs throughout the entire joint tissue. This damage primarily manifests as pain in the affected area. In clinical practice, medication is commonly used to relieve pain, but the treatment's effectiveness is poor and recurrent attacks are likely. Schisandrin B is the most abundant biphenylcyclohexene lignan found in the traditional Chinese medicine Schisandra chinensis, and it possesses various pharmacological effects. This study aims to investigate the protective effect of Schisandrin B on mitochondrial damage in osteoarthritis (C28I2 cells) under an inflammatory environment induced by LPS. Cell proliferation and activity, scratch tests, and LDH release tests are utilized to assess cell growth and migration ability. The immunofluorescence assay was used to detect the expression levels of proliferation and apoptosis proteins. The Western Blot assay was used to detect the expression levels of mitochondrial fusion and division proteins. The JC-1 assay was used to detect changes in mitochondrial membrane potential. The mitochondrial fluorescence probe assay was used to detect mitochondrial activity. Through research, it was found that Schisandrin B promotes the proliferation, growth, and migration of C28I2 cells, reduces apoptosis of C28I2 cells, balances mitochondrial fusion and division, stabilizes mitochondrial membrane potential, and promotes mitochondrial activity in an LPS induced inflammatory environment.

骨关节炎是一种常见的关节疾病,其特点是整个关节组织的关节软骨都受到损伤。这种损伤主要表现为患处疼痛。在临床实践中,常用药物来缓解疼痛,但疗效不佳,且容易反复发作。五味子素 B 是中药五味子中含量最高的联苯环己烯木质素,具有多种药理作用。本研究旨在探讨五味子素 B 在 LPS 诱导的炎症环境下对骨关节炎(C28I2 细胞)线粒体损伤的保护作用。本研究利用细胞增殖和活性、划痕试验和 LDH 释放试验来评估细胞的生长和迁移能力。免疫荧光试验用于检测增殖和凋亡蛋白的表达水平。Western 印迹试验用于检测线粒体融合和分裂蛋白的表达水平。JC-1 试验用于检测线粒体膜电位的变化。线粒体荧光探针检测法用于检测线粒体活性。通过研究发现,五味子素 B 能促进 C28I2 细胞的增殖、生长和迁移,减少 C28I2 细胞的凋亡,平衡线粒体融合和分裂,稳定线粒体膜电位,并在 LPS 诱导的炎症环境中促进线粒体活性。
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引用次数: 0
Editorial. 社论
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 DOI: 10.1007/s00232-024-00313-4
Amitabha Chattopadhyay
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引用次数: 0
Potential Role of Nrf2, HER2, and ALDH in Cancer Stem Cells: A Narrative Review. Nrf2、HER2 和 ALDH 在癌症干细胞中的潜在作用:叙述性综述。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-02-14 DOI: 10.1007/s00232-024-00307-2
Azadeh Fakhrioliaei, Sepideh Tanhaei, SeyedAbbas Pakmehr, Maha Noori Shakir, Maytham T Qasim, Maryam Hariri, Alireza Nouhi Kararoudi, Mohammad Valilo

Cancer is one of the main causes of death among humans, second only to cardiovascular diseases. In recent years, numerous studies have been conducted on the pathophysiology of cancer, and it has been established that this disease is developed by a group of stem cells known as cancer stem cells (CSCs). Thus, cancer is considered a stem cell disease; however, there is no comprehensive consensus about the characteristics of these cells. Several different signaling pathways including Notch, Hedgehog, transforming growth factor-β (TGF-β), and WNT/β-catenin pathways cause the self-renewal of CSCs. CSCs change their metabolic pathways in order to access easy energy. Therefore, one of the key objectives of researchers in cancer treatment is to destroy CSCs. Nuclear factor erythroid 2-related factor 2 (Nrf2) plays an essential role in the protection of CSCs from reactive oxygen species (ROS) and chemotherapeutic agents by regulating antioxidants and detoxification enzymes. Human epidermal growth factor receptor 2 (HER2) is a member of the tyrosine kinase receptor family, which contributes to the protection of cancer cells against treatment and implicated in the invasion, epithelial-mesenchymal transition (EMT), and tumorigenesis. Aldehyde dehydrogenases (ALDHs) are highly active in CSCs and protect the cells against damage caused by active aldehydes through the regulation of aldehyde metabolism. On the other hand, ALDHs promote the formation and maintenance of tumor cells and lead to drug resistance in tumors through the activation of various signaling pathways, such as the ALDH1A1/HIF-1α/VEGF axis and Wnt/β-catenin, as well as changing the intracellular pH value. Given the growing body of information in this field, in the present narrative review, we attempted to shed light on the function of Nrf2, HER2, and ALDH in CSCs.

癌症是导致人类死亡的主要原因之一,仅次于心血管疾病。近年来,人们对癌症的病理生理学进行了大量研究,并确定这种疾病是由一组被称为癌症干细胞(CSCs)的干细胞发展而来的。因此,癌症被认为是一种干细胞疾病;然而,关于这些细胞的特征还没有达成全面共识。包括Notch、刺猬蛋白、转化生长因子-β(TGF-β)和WNT/β-catenin通路在内的几种不同信号通路导致了CSCs的自我更新。CSCs会改变其代谢途径,以获取更多能量。因此,研究人员治疗癌症的关键目标之一就是消灭 CSCs。核因子红细胞2相关因子2(Nrf2)通过调节抗氧化剂和解毒酶,在保护CSCs免受活性氧(ROS)和化疗药物侵害方面发挥着重要作用。人类表皮生长因子受体 2(HER2)是酪氨酸激酶受体家族的成员,它有助于保护癌细胞免受治疗,并与侵袭、上皮-间质转化(EMT)和肿瘤发生有关。醛脱氢酶(ALDHs)在癌细胞干细胞中高度活跃,通过调节醛代谢保护细胞免受活性醛的损伤。另一方面,ALDHs 通过激活各种信号通路,如 ALDH1A1/HIF-1α/VEGF 轴和 Wnt/β-catenin 以及改变细胞内 pH 值,促进肿瘤细胞的形成和维持,并导致肿瘤耐药。鉴于这一领域的信息越来越多,我们在本综述中试图阐明 Nrf2、HER2 和 ALDH 在 CSCs 中的功能。
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引用次数: 0
Quantal Properties of Voltage-Dependent Ca2+ Release in Frog Skeletal Muscle Persist After Reduction of [Ca2+] in the Sarcoplasmic Reticulum. 蛙骨骼肌中电压依赖性 Ca2+ 释放的数量特性在肉质网[Ca2+]减少后依然存在
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-03-09 DOI: 10.1007/s00232-024-00309-0
J F Olivera, G Pizarro

In skeletal muscle, the Ca2+ release flux elicited by a voltage clamp pulse rises to an early peak that inactivates rapidly to a much lower steady level. Using a double pulse protocol the fast inactivation follows an arithmetic rule: if the conditioning depolarization is less than or equal to the test depolarization, then decay (peak minus steady level) in the conditioning release is approximately equal to suppression (unconditioned minus conditioned peak) of the test release. This is due to quantal activation by voltage, analogous to the quantal activation of IP3 receptor channels. Two mechanisms are possible. One is the existence of subsets of channels with different sensitivities to voltage. The other is that the clusters of Ca2+-gated Ryanodine Receptor (RyR) β in the parajunctional terminal cisternae might constitute the quantal units. These Ca2+-gated channels are activated by the release of Ca2+ through the voltage-gated RyR α channels. If the RyR β were at the basis of quantal release, it should be modified by strong inhibition of the primary voltage-gated release. This was attained in two ways, by sarcoplasmic reticulum (SR) Ca2+ depletion and by voltage-dependent inactivation. Both procedures reduced global Ca2+ release flux, but SR Ca2+ depletion reduced the single RyR current as well. The effect of both interventions on the quantal properties of Ca2+ release in frog skeletal muscle fibers were studied under voltage clamp. The quantal properties of release were preserved regardless of the inhibitory maneuver applied. These findings put a limit on the role of the Ca2+-activated component of release in generating quantal activation.

在骨骼肌中,电压钳脉冲引起的 Ca2+ 释放通量会上升到一个早期峰值,然后迅速失活到一个低得多的稳定水平。使用双脉冲方案时,快速失活遵循一个算术规则:如果调节去极化小于或等于测试去极化,那么调节释放的衰减(峰值减去稳定水平)大约等于测试释放的抑制(非调节减去调节峰值)。这是由于电压的量子激活,类似于 IP3 受体通道的量子激活。有两种可能的机制。一种是存在对电压敏感性不同的通道子集。另一种机制是,副功能末端小室中的 Ca2+ 门控瑞诺丁受体(RyR)β 簇可能构成量子单位。通过电压门控 RyR α 通道释放的 Ca2+ 激活了这些 Ca2+ 门控通道。如果 RyR β 是量子释放的基础,那么它应该通过强烈抑制主要的电压门控释放来改变。这可以通过两种方式实现,即肌浆网(SR)Ca2+耗竭和电压依赖性失活。这两种方法都降低了整体 Ca2+ 释放通量,但 SR Ca2+ 耗竭也降低了单一 RyR 电流。在电压钳下研究了这两种干预措施对蛙骨骼肌纤维中 Ca2+ 释放量性的影响。无论采用哪种抑制方法,释放的量子特性都保持不变。这些发现限制了 Ca2+ 激活释放成分在产生量性激活中的作用。
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引用次数: 0
Bioinformatic Study of Possible Acute Regulation of Acid Secretion in the Stomach. 胃酸分泌的可能急性调节的生物信息学研究
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-03-04 DOI: 10.1007/s00232-024-00310-7
Yan Hay Grace Lee, Nicole T Cerf, Nicholas Shalaby, Mónica R Montes, Ronald J Clarke

The gastric H+,K+-ATPase is an integral membrane protein which derives energy from the hydrolysis of ATP to transport H+ ions from the parietal cells of the gastric mucosa into the stomach in exchange for K+ ions. It is responsible for the acidic environment of the stomach, which is essential for digestion. Acid secretion is regulated by the recruitment of the H+,K+-ATPase from intracellular stores into the plasma membrane on the ingestion of food. The similar amino acid sequences of the lysine-rich N-termini α-subunits of the H+,K+- and Na+,K+-ATPases, suggests similar acute regulation mechanisms, specifically, an electrostatic switch mechanism involving an interaction of the N-terminal tail with the surface of the surrounding membrane and a modulation of the interaction via regulatory phosphorylation by protein kinases. From a consideration of sequence alignment of the H+,K+-ATPase and an analysis of its coevolution with protein kinase C and kinases of the Src family, the evidence points towards a phosphorylation of tyrosine-7 of the N-terminus by either Lck or Yes in all vertebrates except cartilaginous fish. The results obtained will guide and focus future experimental research.

胃 H+、K+-ATP 酶是一种整体膜蛋白,它通过水解 ATP 获得能量,将 H+ 离子从胃黏膜顶细胞运送到胃中,以交换 K+ 离子。它负责维持胃的酸性环境,这对消化至关重要。摄入食物时,H+,K+-ATP 酶从细胞内储存库招募到质膜,从而调节胃酸分泌。H+,K+-和Na+,K+-ATP酶富含赖氨酸的N-末端α-亚基的氨基酸序列相似,这表明它们具有相似的急性调节机制,特别是涉及N-末端尾部与周围膜表面相互作用的静电转换机制,以及通过蛋白激酶的调节性磷酸化对这种相互作用的调节。通过对 H+,K+-ATPase 的序列比对以及对其与蛋白激酶 C 和 Src 家族激酶共同进化的分析,有证据表明,在除软骨鱼类以外的所有脊椎动物中,N-末端的酪氨酸-7 会被 Lck 或 Yes 磷酸化。获得的结果将指导并聚焦未来的实验研究。
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引用次数: 0
Streamlined Biotinylation, Enrichment and Analysis for Enhanced Plasma Membrane Protein Identification Using TurboID and TurboID-Start Biotin Ligases. 使用 TurboID 和 TurboID-Start 生物素连接酶简化生物素酰化、富集和分析,以加强质膜蛋白质鉴定。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-01-30 DOI: 10.1007/s00232-023-00303-y
Mehmet Sarihan, Murat Kasap, Gurler Akpinar

Plasma membrane proteins (PMPs) play pivotal roles in various cellular events and are crucial in disease pathogenesis, making their comprehensive characterization vital for biomedical research. However, the hydrophobic nature and low expression levels of PMPs pose challenges for conventional enrichment methods, hindering their identification and functional profiling. In this study, we presented a novel TurboID-based enrichment approach for PMPs that helped overcoming some of the existing limitations. We evaluated the efficacy of TurboID and its modified form, TurboID-START, in PMP enrichment, achieving efficient and targeted labelling of PMPs without the need for stable cell line generation. This approach resulted reduction in non-specific biotinylation events, leading to improved PMP enrichment and enabled assessment of the subcellular proteome associated with the plasma membrane. Our findings paved the way for studies targeting the dynamic nature of the plasma membrane proteome and aiming to capture transient associations of proteins with the plasma membrane. The novel TurboID-based enrichment approach presented here offers promising prospects for in-depth investigations into PMPs and their roles in cellular processes.

质膜蛋白(PMPs)在各种细胞事件中发挥着关键作用,在疾病发病机制中也至关重要,因此对它们进行全面表征对生物医学研究至关重要。然而,PMPs 的疏水性和低表达水平给传统的富集方法带来了挑战,阻碍了它们的鉴定和功能谱分析。在本研究中,我们提出了一种基于 TurboID 的新型 PMPs 富集方法,有助于克服现有的一些限制。我们评估了 TurboID 及其改进型 TurboID-START 在 PMP 富集中的功效,无需生成稳定的细胞系即可实现 PMP 的高效和靶向标记。这种方法减少了非特异性生物素化事件,从而提高了 PMP 富集效果,并能评估与质膜相关的亚细胞蛋白质组。我们的发现为研究质膜蛋白质组的动态性质以及捕捉蛋白质与质膜的瞬时关联铺平了道路。本文介绍的基于 TurboID 的新型富集方法为深入研究 PMPs 及其在细胞过程中的作用提供了广阔的前景。
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引用次数: 0
Construction and Analysis of a Mitochondrial Metabolism-Related Prognostic Model for Breast Cancer to Evaluate Survival and Immunotherapy. 构建和分析与线粒体代谢相关的乳腺癌预后模型,以评估生存期和免疫疗法。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-03-05 DOI: 10.1007/s00232-024-00308-1
Yuting Lin, Zhongxin Huang, Baogen Zhang, Hanhui Yang, Shu Yang

As one of the most prevalent malignancies among women, breast cancer (BC) is tightly linked to metabolic dysfunction. However, the correlation between mitochondrial metabolism-related genes (MMRGs) and BC remains unclear. The training and validation datasets for BC were obtained from The Cancer Genome Atlas and Gene Expression Omnibus databases, respectively. MMRG-related data were obtained from the Molecular Signatures Database. A risk score prognostic model incorporating MMRGs was established based on univariate, LASSO, and multivariate Cox regression analyses. Independent factors affecting BC prognosis were identified through regression analysis and presented in a nomogram. Single-sample gene set enrichment analysis was employed to assess the immune levels of high-risk (HR) and low-risk (LR) groups. The sensitivity of BC patients in the two groups to common anti-tumor drugs was evaluated by utilizing the Genomics of Drug Sensitivity in Cancer database. 12 MMRGs significantly associated with survival were selected from 1234 MMRGs. A 12-gene risk score prognostic model was built. In the multivariate regression analysis incorporating classical clinical factors, the MMRG-related risk score remained an independent prognostic factor. As revealed by tumor immune microenvironment analysis, the LR group with higher survival rates had elevated immune levels. The drug sensitivity results unmasked that the LR group demonstrated higher sensitivity to Irinotecan, Nilotinib, and Oxaliplatin, while the HR group demonstrated higher sensitivity to Lapatinib. The development of MMRG characteristics provides a comprehensive understanding of mitochondrial metabolism in BC, aiding in the prediction of prognosis and tumor microenvironment, and offering promising therapeutic choices for BC patients with different MMRG risk scores.

作为女性最常见的恶性肿瘤之一,乳腺癌(BC)与代谢功能障碍密切相关。然而,线粒体代谢相关基因(MMRGs)与乳腺癌之间的相关性仍不清楚。BC的训练数据集和验证数据集分别来自癌症基因组图谱(The Cancer Genome Atlas)和基因表达总库(Gene Expression Omnibus)数据库。MMRG 相关数据来自分子特征数据库。基于单变量、LASSO和多变量Cox回归分析,建立了一个包含MMRG的风险评分预后模型。通过回归分析确定了影响BC预后的独立因素,并以提名图的形式呈现。采用单样本基因组富集分析评估高危(HR)组和低危(LR)组的免疫水平。利用癌症药物敏感性基因组学数据库评估了两组 BC 患者对常用抗肿瘤药物的敏感性。从1234个MMRG中筛选出了12个与生存率明显相关的MMRG。建立了一个 12 基因风险评分预后模型。在结合经典临床因素的多变量回归分析中,MMRG相关风险评分仍然是一个独立的预后因素。肿瘤免疫微环境分析显示,生存率较高的 LR 组免疫水平升高。药物敏感性结果显示,LR组对伊立替康、尼洛替尼和奥沙利铂的敏感性更高,而HR组对拉帕替尼的敏感性更高。MMRG特征的发展提供了对BC线粒体代谢的全面了解,有助于预测预后和肿瘤微环境,并为不同MMRG风险评分的BC患者提供了有前景的治疗选择。
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Journal of Membrane Biology
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