首页 > 最新文献

arXiv - QuanBio - Neurons and Cognition最新文献

英文 中文
Multi-modal Imaging Genomics Transformer: Attentive Integration of Imaging with Genomic Biomarkers for Schizophrenia Classification 多模态成像基因组学变压器:将成像与基因组生物标记物紧密结合,用于精神分裂症分类
Pub Date : 2024-07-28 DOI: arxiv-2407.19385
Nagur Shareef Shaik, Teja Krishna Cherukuri, Vince D. Calhoun, Dong Hye Ye
Schizophrenia (SZ) is a severe brain disorder marked by diverse cognitiveimpairments, abnormalities in brain structure, function, and genetic factors.Its complex symptoms and overlap with other psychiatric conditions challengetraditional diagnostic methods, necessitating advanced systems to improveprecision. Existing research studies have mostly focused on imaging data, suchas structural and functional MRI, for SZ diagnosis. There has been less focuson the integration of genomic features despite their potential in identifyingheritable SZ traits. In this study, we introduce a Multi-modal Imaging GenomicsTransformer (MIGTrans), that attentively integrates genomics with structuraland functional imaging data to capture SZ-related neuroanatomical andconnectome abnormalities. MIGTrans demonstrated improved SZ classificationperformance with an accuracy of 86.05% (+/- 0.02), offering clearinterpretations and identifying significant genomic locations and brainmorphological/connectivity patterns associated with SZ.
精神分裂症(SZ)是一种严重的脑部疾病,其特征是多种认知障碍、大脑结构和功能异常以及遗传因素。它的症状复杂,并与其他精神疾病重叠,这对传统的诊断方法提出了挑战,需要先进的系统来提高诊断的准确性。现有的研究主要集中于用于 SZ 诊断的成像数据,如结构性和功能性 MRI。尽管基因组特征在识别可遗传的 SZ 特征方面具有潜力,但对其整合的关注却较少。在这项研究中,我们介绍了一种多模态成像基因组学转换器(MIGTrans),它将基因组学与结构和功能成像数据进行了细致的整合,以捕捉与 SZ 相关的神经解剖和连接组异常。MIGTrans 的 SZ 分类准确率高达 86.05% (+/- 0.02),提供了清晰的解释,并确定了与 SZ 相关的重要基因组位置和脑形态学/连接模式。
{"title":"Multi-modal Imaging Genomics Transformer: Attentive Integration of Imaging with Genomic Biomarkers for Schizophrenia Classification","authors":"Nagur Shareef Shaik, Teja Krishna Cherukuri, Vince D. Calhoun, Dong Hye Ye","doi":"arxiv-2407.19385","DOIUrl":"https://doi.org/arxiv-2407.19385","url":null,"abstract":"Schizophrenia (SZ) is a severe brain disorder marked by diverse cognitive\u0000impairments, abnormalities in brain structure, function, and genetic factors.\u0000Its complex symptoms and overlap with other psychiatric conditions challenge\u0000traditional diagnostic methods, necessitating advanced systems to improve\u0000precision. Existing research studies have mostly focused on imaging data, such\u0000as structural and functional MRI, for SZ diagnosis. There has been less focus\u0000on the integration of genomic features despite their potential in identifying\u0000heritable SZ traits. In this study, we introduce a Multi-modal Imaging Genomics\u0000Transformer (MIGTrans), that attentively integrates genomics with structural\u0000and functional imaging data to capture SZ-related neuroanatomical and\u0000connectome abnormalities. MIGTrans demonstrated improved SZ classification\u0000performance with an accuracy of 86.05% (+/- 0.02), offering clear\u0000interpretations and identifying significant genomic locations and brain\u0000morphological/connectivity patterns associated with SZ.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141869075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
QEEGNet: Quantum Machine Learning for Enhanced Electroencephalography Encoding QEEGNet:用于增强脑电图编码的量子机器学习
Pub Date : 2024-07-27 DOI: arxiv-2407.19214
Chi-Sheng Chen, Samuel Yen-Chi Chen, Aidan Hung-Wen Tsai, Chun-Shu Wei
Electroencephalography (EEG) is a critical tool in neuroscience and clinicalpractice for monitoring and analyzing brain activity. Traditional neuralnetwork models, such as EEGNet, have achieved considerable success in decodingEEG signals but often struggle with the complexity and high dimensionality ofthe data. Recent advances in quantum computing present new opportunities toenhance machine learning models through quantum machine learning (QML)techniques. In this paper, we introduce Quantum-EEGNet (QEEGNet), a novelhybrid neural network that integrates quantum computing with the classicalEEGNet architecture to improve EEG encoding and analysis, as a forward-lookingapproach, acknowledging that the results might not always surpass traditionalmethods but it shows its potential. QEEGNet incorporates quantum layers withinthe neural network, allowing it to capture more intricate patterns in EEG dataand potentially offering computational advantages. We evaluate QEEGNet on abenchmark EEG dataset, BCI Competition IV 2a, demonstrating that itconsistently outperforms traditional EEGNet on most of the subjects and otherrobustness to noise. Our results highlight the significant potential ofquantum-enhanced neural networks in EEG analysis, suggesting new directions forboth research and practical applications in the field.
脑电图(EEG)是神经科学和临床实践中监测和分析大脑活动的重要工具。传统的神经网络模型(如 EEGNet)在解码脑电信号方面取得了相当大的成功,但往往难以应对数据的复杂性和高维性。量子计算的最新进展为通过量子机器学习(QML)技术增强机器学习模型提供了新的机遇。在本文中,我们介绍了量子电子脑电图网(QEEGNet),这是一种新颖的混合神经网络,它将量子计算与经典电子脑电图网架构整合在一起,以改进脑电图编码和分析,作为一种前瞻性方法,我们承认其结果不一定总能超越传统方法,但它显示了其潜力。QEEGNet 在神经网络中加入了量子层,使其能够捕捉脑电图数据中更复杂的模式,并可能提供计算优势。我们在基准脑电图数据集 BCI Competition IV 2a 上对 QEEGNet 进行了评估,结果表明 QEEGNet 在大多数受试者身上的表现一直优于传统 EEGNet,而且对噪声的稳定性也很好。我们的研究结果凸显了量子增强神经网络在脑电图分析中的巨大潜力,为该领域的研究和实际应用指明了新的方向。
{"title":"QEEGNet: Quantum Machine Learning for Enhanced Electroencephalography Encoding","authors":"Chi-Sheng Chen, Samuel Yen-Chi Chen, Aidan Hung-Wen Tsai, Chun-Shu Wei","doi":"arxiv-2407.19214","DOIUrl":"https://doi.org/arxiv-2407.19214","url":null,"abstract":"Electroencephalography (EEG) is a critical tool in neuroscience and clinical\u0000practice for monitoring and analyzing brain activity. Traditional neural\u0000network models, such as EEGNet, have achieved considerable success in decoding\u0000EEG signals but often struggle with the complexity and high dimensionality of\u0000the data. Recent advances in quantum computing present new opportunities to\u0000enhance machine learning models through quantum machine learning (QML)\u0000techniques. In this paper, we introduce Quantum-EEGNet (QEEGNet), a novel\u0000hybrid neural network that integrates quantum computing with the classical\u0000EEGNet architecture to improve EEG encoding and analysis, as a forward-looking\u0000approach, acknowledging that the results might not always surpass traditional\u0000methods but it shows its potential. QEEGNet incorporates quantum layers within\u0000the neural network, allowing it to capture more intricate patterns in EEG data\u0000and potentially offering computational advantages. We evaluate QEEGNet on a\u0000benchmark EEG dataset, BCI Competition IV 2a, demonstrating that it\u0000consistently outperforms traditional EEGNet on most of the subjects and other\u0000robustness to noise. Our results highlight the significant potential of\u0000quantum-enhanced neural networks in EEG analysis, suggesting new directions for\u0000both research and practical applications in the field.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141869076","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From pixels to planning: scale-free active inference 从像素到规划:无标度主动推理
Pub Date : 2024-07-27 DOI: arxiv-2407.20292
Karl Friston, Conor Heins, Tim Verbelen, Lancelot Da Costa, Tommaso Salvatori, Dimitrije Markovic, Alexander Tschantz, Magnus Koudahl, Christopher Buckley, Thomas Parr
This paper describes a discrete state-space model -- and accompanying methods-- for generative modelling. This model generalises partially observed Markovdecision processes to include paths as latent variables, rendering it suitablefor active inference and learning in a dynamic setting. Specifically, weconsider deep or hierarchical forms using the renormalisation group. Theensuing renormalising generative models (RGM) can be regarded as discretehomologues of deep convolutional neural networks or continuous state-spacemodels in generalised coordinates of motion. By construction, thesescale-invariant models can be used to learn compositionality over space andtime, furnishing models of paths or orbits; i.e., events of increasing temporaldepth and itinerancy. This technical note illustrates the automatic discovery,learning and deployment of RGMs using a series of applications. We start withimage classification and then consider the compression and generation of moviesand music. Finally, we apply the same variational principles to the learning ofAtari-like games.
本文介绍了一种用于生成建模的离散状态空间模型及相关方法。该模型概括了部分观测的马尔可夫决策过程,将路径作为潜在变量,使其适用于动态环境下的主动推理和学习。具体来说,我们使用重正化组来考虑深度或分层形式。所研究的重正化生成模型(RGM)可视为深度卷积神经网络或广义运动坐标连续状态空间模型的离散同源模型。通过构造,这些阶跃不变模型可用于学习空间和时间的构成性,提供路径或轨道模型,即时间深度和行程不断增加的事件模型。本技术说明通过一系列应用说明了 RGM 的自动发现、学习和部署。我们从图像分类开始,然后考虑电影和音乐的压缩与生成。最后,我们将同样的变分原理应用于类阿塔里游戏的学习。
{"title":"From pixels to planning: scale-free active inference","authors":"Karl Friston, Conor Heins, Tim Verbelen, Lancelot Da Costa, Tommaso Salvatori, Dimitrije Markovic, Alexander Tschantz, Magnus Koudahl, Christopher Buckley, Thomas Parr","doi":"arxiv-2407.20292","DOIUrl":"https://doi.org/arxiv-2407.20292","url":null,"abstract":"This paper describes a discrete state-space model -- and accompanying methods\u0000-- for generative modelling. This model generalises partially observed Markov\u0000decision processes to include paths as latent variables, rendering it suitable\u0000for active inference and learning in a dynamic setting. Specifically, we\u0000consider deep or hierarchical forms using the renormalisation group. The\u0000ensuing renormalising generative models (RGM) can be regarded as discrete\u0000homologues of deep convolutional neural networks or continuous state-space\u0000models in generalised coordinates of motion. By construction, these\u0000scale-invariant models can be used to learn compositionality over space and\u0000time, furnishing models of paths or orbits; i.e., events of increasing temporal\u0000depth and itinerancy. This technical note illustrates the automatic discovery,\u0000learning and deployment of RGMs using a series of applications. We start with\u0000image classification and then consider the compression and generation of movies\u0000and music. Finally, we apply the same variational principles to the learning of\u0000Atari-like games.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141869074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing the Brain Wave Hypothesis: Call for Commentary 评估脑电波假说:征集评论
Pub Date : 2024-07-25 DOI: arxiv-2408.04636
Robert Worden
It has been proposed that there is a wave excitation in animal brains, whoserole is to represent three dimensional local space in a working memory.Evidence for the wave comes from the mammalian thalamus, the central body ofthe insect brain, and from computational models of spatial cognition. This isdescribed in related papers. I assess the Bayesian probability that the waveexists, from this evidence. The probability of the wave in the brain isrobustly greater than 0.4. If there is such a wave, we may need to re-think ourwhole understanding of the brain, in a break from classical neuroscience. I askother researchers to comment on the wave hypothesis and on this assessment. Ina companion paper, I outline possible ways to test it.
有人提出,在动物大脑中存在一种激发波,其作用是在工作记忆中表示三维局部空间。这种激发波的证据来自哺乳动物丘脑、昆虫大脑中枢以及空间认知的计算模型。相关论文对此进行了描述。根据这些证据,我评估了 "波 "存在的贝叶斯概率。大脑中存在波的概率大致大于 0.4。如果真的存在这种波,我们可能需要打破经典神经科学的束缚,重新思考我们对大脑的整体认识。我请其他研究人员就波浪假说和这一评估发表评论。在本文的附录中,我概述了检验这一假说的可能方法。
{"title":"Assessing the Brain Wave Hypothesis: Call for Commentary","authors":"Robert Worden","doi":"arxiv-2408.04636","DOIUrl":"https://doi.org/arxiv-2408.04636","url":null,"abstract":"It has been proposed that there is a wave excitation in animal brains, whose\u0000role is to represent three dimensional local space in a working memory.\u0000Evidence for the wave comes from the mammalian thalamus, the central body of\u0000the insect brain, and from computational models of spatial cognition. This is\u0000described in related papers. I assess the Bayesian probability that the wave\u0000exists, from this evidence. The probability of the wave in the brain is\u0000robustly greater than 0.4. If there is such a wave, we may need to re-think our\u0000whole understanding of the brain, in a break from classical neuroscience. I ask\u0000other researchers to comment on the wave hypothesis and on this assessment. In\u0000a companion paper, I outline possible ways to test it.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141938729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analyzing Brain Tumor Connectomics using Graphs and Persistent Homology 利用图谱和持久同源性分析脑肿瘤连接组学
Pub Date : 2024-07-25 DOI: arxiv-2407.17938
Debanjali Bhattacharya, Ninad Aithal, Manish Jayswal, Neelam Sinha
Recent advances in molecular and genetic research have identified a diverserange of brain tumor sub-types, shedding light on differences in theirmolecular mechanisms, heterogeneity, and origins. The present study performswhole-brain connectome analysis using diffusionweighted images. To achievethis, both graph theory and persistent homology - a prominent approach intopological data analysis are employed in order to quantify changes in thestructural connectivity of the wholebrain connectome in subjects with braintumors. Probabilistic tractography is used to map the number of streamlinesconnecting 84 distinct brain regions, as delineated by the Desikan-Killianyatlas from FreeSurfer. These streamline mappings form the connectome matrix, onwhich persistent homology based analysis and graph theoretical analysis areexecuted to evaluate the discriminatory power between tumor sub-types thatinclude meningioma and glioma. A detailed statistical analysis is conducted onpersistent homology-derived topological features and graphical features toidentify the brain regions where differences between study groups arestatistically significant (p < 0.05). For classification purpose, graph-basedlocal features are utilized, achieving a highest accuracy of 88%. Inclassifying tumor sub-types, an accuracy of 80% is attained. The findingsobtained from this study underscore the potential of persistent homology andgraph theoretical analysis of the whole-brain connectome in detectingalterations in structural connectivity patterns specific to different types ofbrain tumors.
分子和基因研究的最新进展发现了多种脑肿瘤亚型,揭示了它们在分子机制、异质性和起源方面的差异。本研究利用扩散加权图像进行全脑连接组分析。为了实现这一目标,研究人员采用了图论和持久同源性--一种著名的拓扑数据分析方法--来量化脑肿瘤受试者全脑连通组结构连通性的变化。根据 FreeSurfer 的 Desikan-Killianyatlas 划分的 84 个不同脑区的连接流线数量,采用了概率牵引图绘制。这些流线映射形成了连接组矩阵,在此基础上执行基于同源性的持续分析和图论分析,以评估包括脑膜瘤和胶质瘤在内的肿瘤亚型之间的鉴别力。对持久同源性拓扑特征和图谱特征进行了详细的统计分析,以确定研究组间差异具有显著统计学意义(p < 0.05)的脑区域。在分类方面,利用基于图形的局部特征,准确率最高达到 88%。在肿瘤亚型分类方面,准确率达到 80%。这项研究的发现强调了全脑连接组的持续同源性和图论分析在检测不同类型脑肿瘤特有的结构连接模式变化方面的潜力。
{"title":"Analyzing Brain Tumor Connectomics using Graphs and Persistent Homology","authors":"Debanjali Bhattacharya, Ninad Aithal, Manish Jayswal, Neelam Sinha","doi":"arxiv-2407.17938","DOIUrl":"https://doi.org/arxiv-2407.17938","url":null,"abstract":"Recent advances in molecular and genetic research have identified a diverse\u0000range of brain tumor sub-types, shedding light on differences in their\u0000molecular mechanisms, heterogeneity, and origins. The present study performs\u0000whole-brain connectome analysis using diffusionweighted images. To achieve\u0000this, both graph theory and persistent homology - a prominent approach in\u0000topological data analysis are employed in order to quantify changes in the\u0000structural connectivity of the wholebrain connectome in subjects with brain\u0000tumors. Probabilistic tractography is used to map the number of streamlines\u0000connecting 84 distinct brain regions, as delineated by the Desikan-Killiany\u0000atlas from FreeSurfer. These streamline mappings form the connectome matrix, on\u0000which persistent homology based analysis and graph theoretical analysis are\u0000executed to evaluate the discriminatory power between tumor sub-types that\u0000include meningioma and glioma. A detailed statistical analysis is conducted on\u0000persistent homology-derived topological features and graphical features to\u0000identify the brain regions where differences between study groups are\u0000statistically significant (p < 0.05). For classification purpose, graph-based\u0000local features are utilized, achieving a highest accuracy of 88%. In\u0000classifying tumor sub-types, an accuracy of 80% is attained. The findings\u0000obtained from this study underscore the potential of persistent homology and\u0000graph theoretical analysis of the whole-brain connectome in detecting\u0000alterations in structural connectivity patterns specific to different types of\u0000brain tumors.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141774339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
HVM-1: Large-scale video models pretrained with nearly 5000 hours of human-like video data HVM-1:使用近 5000 小时类人视频数据预训练的大规模视频模型
Pub Date : 2024-07-25 DOI: arxiv-2407.18067
A. Emin Orhan
We introduce Human-like Video Models (HVM-1), large-scale video modelspretrained with nearly 5000 hours of curated human-like video data (mostlyegocentric, temporally extended, continuous video recordings), using thespatiotemporal masked autoencoder (ST-MAE) algorithm. We release two 633Mparameter models trained at spatial resolutions of 224x224 and 448x448 pixels.We evaluate the performance of these models in downstream few-shot video andimage recognition tasks and compare them against a model pretrained with 1330hours of short action-oriented video clips from YouTube (Kinetics-700). HVM-1models perform competitively against the Kinetics-700 pretrained model indownstream evaluations despite substantial qualitative differences between thespatiotemporal characteristics of the corresponding pretraining datasets. HVM-1models also learn more accurate and more robust object representations comparedto models pretrained with the image-based MAE algorithm on the same data,demonstrating the potential benefits of learning to predict temporalregularities in natural videos for learning better object representations.
我们介绍了类人视频模型(HVM-1),它是使用近 5000 个小时的经过整理的类人视频数据(主要是以时间为中心的连续视频记录),并使用时空掩码自动编码器(ST-MAE)算法训练而成的大型视频模型。我们评估了这些模型在下游少镜头视频和图像识别任务中的表现,并将它们与使用 1330 小时 YouTube 短动作导向视频片段(Kinetics-700)预训练的模型进行了比较。在下游评估中,尽管相应预训练数据集的时空特征在质量上存在很大差异,但 HVM-1 模型与 Kinetics-700 预训练模型相比仍具有竞争力。与在相同数据上使用基于图像的 MAE 算法预训练的模型相比,HVM-1 模型还能学习到更准确、更稳健的物体表征,这证明了学习预测自然视频中的时间规律对学习更好的物体表征的潜在好处。
{"title":"HVM-1: Large-scale video models pretrained with nearly 5000 hours of human-like video data","authors":"A. Emin Orhan","doi":"arxiv-2407.18067","DOIUrl":"https://doi.org/arxiv-2407.18067","url":null,"abstract":"We introduce Human-like Video Models (HVM-1), large-scale video models\u0000pretrained with nearly 5000 hours of curated human-like video data (mostly\u0000egocentric, temporally extended, continuous video recordings), using the\u0000spatiotemporal masked autoencoder (ST-MAE) algorithm. We release two 633M\u0000parameter models trained at spatial resolutions of 224x224 and 448x448 pixels.\u0000We evaluate the performance of these models in downstream few-shot video and\u0000image recognition tasks and compare them against a model pretrained with 1330\u0000hours of short action-oriented video clips from YouTube (Kinetics-700). HVM-1\u0000models perform competitively against the Kinetics-700 pretrained model in\u0000downstream evaluations despite substantial qualitative differences between the\u0000spatiotemporal characteristics of the corresponding pretraining datasets. HVM-1\u0000models also learn more accurate and more robust object representations compared\u0000to models pretrained with the image-based MAE algorithm on the same data,\u0000demonstrating the potential benefits of learning to predict temporal\u0000regularities in natural videos for learning better object representations.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141774252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preliminary Results of Neuromorphic Controller Design and a Parkinson's Disease Dataset Building for Closed-Loop Deep Brain Stimulation 神经形态控制器设计和帕金森病数据集构建的初步结果,用于闭环深度脑刺激
Pub Date : 2024-07-25 DOI: arxiv-2407.17756
Ananna Biswas, Hongyu An
Parkinson's Disease afflicts millions of individuals globally. Emerging as apromising brain rehabilitation therapy for Parkinson's Disease, Closed-loopDeep Brain Stimulation (CL-DBS) aims to alleviate motor symptoms. The CL-DBSsystem comprises an implanted battery-powered medical device in the chest thatsends stimulation signals to the brains of patients. These electricalstimulation signals are delivered to targeted brain regions via electrodes,with the magnitude of stimuli adjustable. However, current CL-DBS systemsutilize energy-inefficient approaches, including reinforcement learning, fuzzyinterface, and field-programmable gate array (FPGA), among others. Theseapproaches make the traditional CL-DBS system impractical for implanted andwearable medical devices. This research proposes a novel neuromorphic approachthat builds upon Leaky Integrate and Fire neuron (LIF) controllers to adjustthe magnitude of DBS electric signals according to the various severities of PDpatients. Our neuromorphic controllers, on-off LIF controller, and dual LIFcontroller, successfully reduced the power consumption of CL-DBS systems by 19%and 56%, respectively. Meanwhile, the suppression efficiency increased by 4.7%and 6.77%. Additionally, to address the data scarcity of Parkinson's Diseasesymptoms, we built Parkinson's Disease datasets that include the raw neuralactivities from the subthalamic nucleus at beta oscillations, which are typicalphysiological biomarkers for Parkinson's Disease.
帕金森病困扰着全球数百万人。闭环深部脑刺激疗法(CL-DBS)作为一种新兴的帕金森病脑康复疗法,旨在缓解运动症状。闭环深部脑刺激系统包括一个植入胸腔的电池供电医疗设备,向患者大脑发送刺激信号。这些电刺激信号通过电极传递到目标脑区,刺激强度可调。然而,目前的CL-DBS系统采用了能效低的方法,包括强化学习、模糊接口和现场可编程门阵列(FPGA)等。这些方法使得传统的 CL-DBS 系统无法用于植入式和可穿戴式医疗设备。本研究提出了一种新颖的神经形态方法,该方法建立在漏电积分和火神经元(LIF)控制器的基础上,可根据帕金森病患者的不同严重程度调整 DBS 电信号的大小。我们的神经形态控制器、开-关 LIF 控制器和双 LIF 控制器成功地将 CL-DBS 系统的功耗分别降低了 19% 和 56%。同时,抑制效率提高了 4.7% 和 6.77%。此外,针对帕金森病症状数据稀缺的问题,我们建立了帕金森病数据集,其中包括眼下核β振荡时的原始神经活动,这是帕金森病的典型生理生物标志物。
{"title":"Preliminary Results of Neuromorphic Controller Design and a Parkinson's Disease Dataset Building for Closed-Loop Deep Brain Stimulation","authors":"Ananna Biswas, Hongyu An","doi":"arxiv-2407.17756","DOIUrl":"https://doi.org/arxiv-2407.17756","url":null,"abstract":"Parkinson's Disease afflicts millions of individuals globally. Emerging as a\u0000promising brain rehabilitation therapy for Parkinson's Disease, Closed-loop\u0000Deep Brain Stimulation (CL-DBS) aims to alleviate motor symptoms. The CL-DBS\u0000system comprises an implanted battery-powered medical device in the chest that\u0000sends stimulation signals to the brains of patients. These electrical\u0000stimulation signals are delivered to targeted brain regions via electrodes,\u0000with the magnitude of stimuli adjustable. However, current CL-DBS systems\u0000utilize energy-inefficient approaches, including reinforcement learning, fuzzy\u0000interface, and field-programmable gate array (FPGA), among others. These\u0000approaches make the traditional CL-DBS system impractical for implanted and\u0000wearable medical devices. This research proposes a novel neuromorphic approach\u0000that builds upon Leaky Integrate and Fire neuron (LIF) controllers to adjust\u0000the magnitude of DBS electric signals according to the various severities of PD\u0000patients. Our neuromorphic controllers, on-off LIF controller, and dual LIF\u0000controller, successfully reduced the power consumption of CL-DBS systems by 19%\u0000and 56%, respectively. Meanwhile, the suppression efficiency increased by 4.7%\u0000and 6.77%. Additionally, to address the data scarcity of Parkinson's Disease\u0000symptoms, we built Parkinson's Disease datasets that include the raw neural\u0000activities from the subthalamic nucleus at beta oscillations, which are typical\u0000physiological biomarkers for Parkinson's Disease.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141774247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Minimal motifs for habituating systems 习惯化系统的最小图案
Pub Date : 2024-07-25 DOI: arxiv-2407.18204
Matthew Smart, Stanislav Y. Shvartsman, Martin Mönnigmann
Habituation - a phenomenon in which a dynamical system exhibits a diminishingresponse to repeated stimulations that eventually recovers when the stimulus iswithheld - is universally observed in living systems from animals tounicellular organisms. Despite its prevalence, generic mechanisms for thisfundamental form of learning remain poorly defined. Drawing inspiration fromprior work on systems that respond adaptively to step inputs, we studyhabituation from a nonlinear dynamics perspective. This approach enables us toformalize classical hallmarks of habituation that have been experimentallyidentified in diverse organisms and stimulus scenarios. We use this frameworkto investigate distinct dynamical circuits capable of habituation. Inparticular, we show that driven linear dynamics of a memory variable withstatic nonlinearities acting at the input and output can implement numeroushallmarks in a mathematically interpretable manner. This work establishes afoundation for understanding the dynamical substrates of this primitivelearning behavior and offers a blueprint for the identification of habituatingcircuits in biological systems.
从动物到细胞生物的生命系统中都普遍存在习惯化现象,即动态系统对重复刺激的反应逐渐减弱,而当停止刺激时,这种反应最终会恢复。尽管这种现象普遍存在,但这种基本学习形式的通用机制仍未得到很好的界定。我们从对阶跃输入做出适应性反应的系统的前人研究中汲取灵感,从非线性动力学的角度研究了习得。这种方法使我们能够将习惯化的经典特征形式化,这些特征已在不同生物体和刺激情景中得到实验验证。我们利用这一框架来研究能够产生习惯化的独特动力学回路。特别是,我们表明,记忆变量的驱动线性动力学与作用于输入和输出的静态非线性可以以数学上可解释的方式实现众多特征。这项研究为理解这种原始学习行为的动力学基础奠定了基础,并为识别生物系统中的习惯化电路提供了蓝图。
{"title":"Minimal motifs for habituating systems","authors":"Matthew Smart, Stanislav Y. Shvartsman, Martin Mönnigmann","doi":"arxiv-2407.18204","DOIUrl":"https://doi.org/arxiv-2407.18204","url":null,"abstract":"Habituation - a phenomenon in which a dynamical system exhibits a diminishing\u0000response to repeated stimulations that eventually recovers when the stimulus is\u0000withheld - is universally observed in living systems from animals to\u0000unicellular organisms. Despite its prevalence, generic mechanisms for this\u0000fundamental form of learning remain poorly defined. Drawing inspiration from\u0000prior work on systems that respond adaptively to step inputs, we study\u0000habituation from a nonlinear dynamics perspective. This approach enables us to\u0000formalize classical hallmarks of habituation that have been experimentally\u0000identified in diverse organisms and stimulus scenarios. We use this framework\u0000to investigate distinct dynamical circuits capable of habituation. In\u0000particular, we show that driven linear dynamics of a memory variable with\u0000static nonlinearities acting at the input and output can implement numerous\u0000hallmarks in a mathematically interpretable manner. This work establishes a\u0000foundation for understanding the dynamical substrates of this primitive\u0000learning behavior and offers a blueprint for the identification of habituating\u0000circuits in biological systems.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141774248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Use-dependent Biases as Optimal Action under Information Bottleneck 依赖使用的偏见是信息瓶颈下的最优行动
Pub Date : 2024-07-25 DOI: arxiv-2407.17793
Hokin X. Deng, Adrian M. Haith
Use-dependent bias is a phenomenon in human sensorimotor behavior wherebymovements become biased towards previously repeated actions. Despite beingwell-documented, the reason why this phenomenon occurs is not year clearlyunderstood. Here, we propose that use-dependent biases can be understood as arational strategy for movement under limitations on the capacity to processsensory information to guide motor output. We adopt an information-theoreticapproach to characterize sensorimotor information processing and determine howbehavior should be optimized given limitations to this capacity. We show thatthis theory naturally predicts the existence of use-dependent biases. Ourframework also generates two further predictions. The first prediction relatesto handedness. The dominant hand is associated with enhanced dexterity andreduced movement variability compared to the non-dominant hand, which wepropose relates to a greater capacity for information processing in regionsthat control movement of the dominant hand. Consequently, the dominant handshould exhibit smaller use-dependent biases compared to the non-dominant hand.The second prediction relates to how use-dependent biases are affected bymovement speed. When moving faster, it is more challenging to correct forinitial movement errors online during the movement. This should exacerbatecosts associated with initial directional error and, according to our theory,reduce the extent of use-dependent biases compared to slower movements, andvice versa. We show that these two empirical predictions, the handedness effectand the speed-dependent effect, are confirmed by experimental data.
使用依赖偏差是人类感官运动行为中的一种现象,即运动偏向于先前重复的动作。尽管这种现象已被广泛记录,但人们对其发生的原因还没有清楚的认识。在此,我们提出,使用依赖性偏差可以理解为在处理感觉信息以指导运动输出的能力受到限制的情况下的运动理性策略。我们采用信息论的方法来描述感觉运动信息处理的特点,并确定在这种能力受到限制的情况下应如何优化行为。我们的研究表明,这一理论自然而然地预测了依赖于使用的偏差的存在。我们的框架还产生了两个进一步的预测。第一个预测与手性有关。与非惯用手相比,惯用手具有更强的灵活性和更低的运动变异性,我们认为这与控制惯用手运动的区域具有更强的信息处理能力有关。因此,与非惯用手相比,惯用手应表现出较小的与使用相关的偏差。当移动速度较快时,在移动过程中在线纠正初始移动误差更具挑战性。根据我们的理论,这应该会加剧与初始方向错误相关的成本,并与较慢的移动速度相比,减少与使用相关的偏差程度,反之亦然。我们的研究表明,实验数据证实了这两个经验预测,即 "手性效应 "和 "速度依赖效应"。
{"title":"Use-dependent Biases as Optimal Action under Information Bottleneck","authors":"Hokin X. Deng, Adrian M. Haith","doi":"arxiv-2407.17793","DOIUrl":"https://doi.org/arxiv-2407.17793","url":null,"abstract":"Use-dependent bias is a phenomenon in human sensorimotor behavior whereby\u0000movements become biased towards previously repeated actions. Despite being\u0000well-documented, the reason why this phenomenon occurs is not year clearly\u0000understood. Here, we propose that use-dependent biases can be understood as a\u0000rational strategy for movement under limitations on the capacity to process\u0000sensory information to guide motor output. We adopt an information-theoretic\u0000approach to characterize sensorimotor information processing and determine how\u0000behavior should be optimized given limitations to this capacity. We show that\u0000this theory naturally predicts the existence of use-dependent biases. Our\u0000framework also generates two further predictions. The first prediction relates\u0000to handedness. The dominant hand is associated with enhanced dexterity and\u0000reduced movement variability compared to the non-dominant hand, which we\u0000propose relates to a greater capacity for information processing in regions\u0000that control movement of the dominant hand. Consequently, the dominant hand\u0000should exhibit smaller use-dependent biases compared to the non-dominant hand.\u0000The second prediction relates to how use-dependent biases are affected by\u0000movement speed. When moving faster, it is more challenging to correct for\u0000initial movement errors online during the movement. This should exacerbate\u0000costs associated with initial directional error and, according to our theory,\u0000reduce the extent of use-dependent biases compared to slower movements, and\u0000vice versa. We show that these two empirical predictions, the handedness effect\u0000and the speed-dependent effect, are confirmed by experimental data.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141785198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neural field equations with time-periodic external inputs and some applications to visual processing 具有时间周期性外部输入的神经场方程及其在视觉处理中的一些应用
Pub Date : 2024-07-24 DOI: arxiv-2407.17294
Maria Virginia Bolelli, Dario Prandi
The aim of this work is to present a mathematical framework for the study offlickering inputs in visual processing tasks. When combined with geometricpatterns, these inputs influence and induce interesting psychophysicalphenomena, such as the MacKay and the Billock-Tsou effects, where the subjectsperceive specific afterimages typically modulated by the flickering frequency.Due to the symmetry-breaking structure of the inputs, classical bifurcationtheory and multi-scale analysis techniques are not very effective in ourcontext. We thus take an approach based on the input-output framework ofcontrol theory for Amari-type neural fields. This allows us to prove that, whendriven by periodic inputs, the dynamics converge to a periodic state. Moreover,we study under which assumptions these nonlinear dynamics can be effectivelylinearised, and in this case we present a precise approximation of the integralkernel for short-range excitatory and long-range inhibitory neuronalinteractions. Finally, for inputs concentrated at the center of the visualfield with a flickering background, we directly relate the width of theillusory contours appearing in the afterimage with both the flickeringfrequency and the strength of the inhibition.
这项研究的目的是提出一个数学框架,用于研究视觉处理任务中的 "闪烁输入"。当这些输入与几何图案相结合时,就会影响并诱发有趣的心理物理现象,例如麦凯效应和比洛克-特苏效应,受试者会感知到通常由闪烁频率调制的特定残像。由于输入的对称性破坏结构,经典的分岔理论和多尺度分析技术在我们的语境中并不十分有效。因此,我们采用了一种基于阿马里型神经场控制理论输入-输出框架的方法。这使我们能够证明,在周期性输入的驱动下,动力学会收敛到周期性状态。此外,我们还研究了在哪些假设条件下这些非线性动力学可以被有效线性化,在这种情况下,我们提出了短程兴奋性和长程抑制性神经元相互作用的整数核的精确近似值。最后,对于集中在视场中心的闪烁背景输入,我们将余像中出现的幻觉轮廓宽度与闪烁频率和抑制强度直接联系起来。
{"title":"Neural field equations with time-periodic external inputs and some applications to visual processing","authors":"Maria Virginia Bolelli, Dario Prandi","doi":"arxiv-2407.17294","DOIUrl":"https://doi.org/arxiv-2407.17294","url":null,"abstract":"The aim of this work is to present a mathematical framework for the study of\u0000flickering inputs in visual processing tasks. When combined with geometric\u0000patterns, these inputs influence and induce interesting psychophysical\u0000phenomena, such as the MacKay and the Billock-Tsou effects, where the subjects\u0000perceive specific afterimages typically modulated by the flickering frequency.\u0000Due to the symmetry-breaking structure of the inputs, classical bifurcation\u0000theory and multi-scale analysis techniques are not very effective in our\u0000context. We thus take an approach based on the input-output framework of\u0000control theory for Amari-type neural fields. This allows us to prove that, when\u0000driven by periodic inputs, the dynamics converge to a periodic state. Moreover,\u0000we study under which assumptions these nonlinear dynamics can be effectively\u0000linearised, and in this case we present a precise approximation of the integral\u0000kernel for short-range excitatory and long-range inhibitory neuronal\u0000interactions. Finally, for inputs concentrated at the center of the visual\u0000field with a flickering background, we directly relate the width of the\u0000illusory contours appearing in the afterimage with both the flickering\u0000frequency and the strength of the inhibition.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141774343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
arXiv - QuanBio - Neurons and Cognition
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1