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Transcriptome analysis of the tardigrade Hypsibius exemplaris exposed to the DNA-damaging agent bleomycin 暴露于 DNA 损伤剂博莱霉素的游仆虫 Hypsibius exemplaris 的转录组分析
Pub Date : 2024-06-05 DOI: 10.2183/pjab.pjab.100.023
Yuki YOSHIDA, Akiyoshi HIRAYAMA, Kazuharu ARAKAWA

Tardigrades are microscopic animals that are renowned for their capabilities of tolerating near-complete desiccation by entering an ametabolic state called anhydrobiosis. However, many species also show high tolerance against radiation in the active state as well, suggesting cross-tolerance via the anhydrobiosis mechanism. Previous studies utilized indirect DNA damaging agents to identify core components of the cross-tolerance machinery in species with high anhydrobiosis capacities. However, it was difficult to distinguish whether transcriptomic changes were specific to DNA damage or mutual with anhydrobiosis. To this end, we performed transcriptome analysis on bleomycin-exposed Hypsibius exemplaris. We observed induction of several tardigrade-specific gene families, including a previously identified novel anti-oxidative stress family, which may be a core component of the cross-tolerance mechanism. We also identified enrichment of the tryptophan metabolism pathway, for which metabolomic analysis suggested engagement of this pathway in stress tolerance. These results provide several candidates for the core component of cross-tolerance, as well as possible anhydrobiosis machinery.

迟发型生物是一种微小动物,它们能够通过进入一种称为 "无水生物状态 "的新陈代谢状态来耐受近乎完全的干燥。然而,许多物种在活性状态下也表现出对辐射的高度耐受性,这表明它们通过无水解机制具有交叉耐受性。以前的研究利用间接 DNA 损伤剂来确定具有高生物活化能力的物种中交叉耐受机制的核心成分。然而,很难区分转录组的变化是 DNA 损伤所特有的,还是与无生物水化相互影响的。为此,我们对暴露于博莱霉素的hypsibius exemplaris进行了转录组分析。我们观察到诱导了几个迟发型特异基因家族,包括之前发现的一个新型抗氧化应激家族,它可能是交叉耐受机制的核心组成部分。我们还发现色氨酸代谢途径的富集,代谢组分析表明该途径参与了应激耐受。这些结果为交叉耐受的核心成分提供了几个候选者,也为可能的无水解机制提供了候选者。
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引用次数: 0
Perturbed maternal microbiota shapes offspring microbiota during early colonization period in mice 母体微生物群紊乱影响小鼠早期定植期的子代微生物群
Pub Date : 2024-05-02 DOI: 10.2183/pjab.100.020
Shiro TOCHITANI, Takamitsu TSUKAHARA, Ryo INOUE

Recent studies have highlighted the impact of disrupted maternal gut microbiota on the colonization of offspring gut microbiota, with implications for offspring developmental trajectories. The extent to which offspring inherit the characteristics of altered maternal gut microbiota remains elusive. In this study, we employed a mouse model where maternal gut microbiota disruption was induced using non-absorbable antibiotics. Systematic chronological analyses of dam fecal samples, offspring luminal content, and offspring gut tissue samples revealed a notable congruence between offspring gut microbiota profiles and those of the perturbed maternal gut microbiota, highlighting the profound influence of maternal microbiota on early-life colonization of offspring gut microbiota. Nonetheless, certain dominant bacterial genera in maternal microbiota did not transfer to the offspring, indicating a bacterial taxonomy-dependent mechanism in the inheritance of maternal gut microbiota. Our results embody the vertical transmission dynamics of disrupted maternal gut microbiota in an animal model, where the gut microbiota of an offspring closely mirrors the gut microbiota of its mother.

最近的研究强调了母体肠道微生物群紊乱对子代肠道微生物群定植的影响,以及对子代发育轨迹的影响。子代在多大程度上继承了母体肠道微生物群改变的特征仍是一个未知数。在这项研究中,我们采用了一种小鼠模型,利用非吸收性抗生素诱导母体肠道微生物群的破坏。对母鼠粪便样本、子代肠腔内容物和子代肠道组织样本进行的系统年代学分析表明,子代肠道微生物群特征与受干扰的母体肠道微生物群特征明显一致,这突出表明母体微生物群对子代肠道微生物群的早期定植具有深远影响。然而,母体微生物群中的某些优势菌属并没有转移到子代,这表明母体肠道微生物群的遗传机制取决于细菌分类学。我们的研究结果体现了母体肠道微生物群紊乱在动物模型中的垂直传播动态,即子代的肠道微生物群与其母亲的肠道微生物群密切相关。
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引用次数: 0
Isolation and grouping of RNA phages by Itaru Watanabe et al. (1967) Itaru Watanabe 等人对 RNA 噬菌体的分离和分组(1967 年)
Pub Date : 2024-04-11 DOI: 10.2183/pjab.100.017
Fumio ARISAKA

I. Watanabe et al. isolated approximately 30 strains of RNA phages from various parts of Japan. To isolate RNA phages, they assessed the infection specificity of male Escherichia coli and RNase sensitivity. They found that the isolated strains of RNA phages could be serologically separated into three groups. Furthermore, most of them were serologically related, and the antiphage rabbit serum prepared by one of these phages neutralized most of the other phages. The only serologically unrelated phage was the RNA phage Qβ, which was isolated at the Institute for Virus Research, Kyoto University, in 1961.

I.Watanabe 等人从日本各地分离出约 30 株 RNA 噬菌体。为了分离 RNA 噬菌体,他们评估了雄性大肠杆菌的感染特异性和 RNase 的敏感性。他们发现,分离出的 RNA 噬菌体菌株在血清学上可分为三组。此外,大多数噬菌体在血清学上是相关的,其中一种噬菌体制备的抗噬菌体兔血清能中和大多数其他噬菌体。唯一血清无关的噬菌体是 RNA 噬菌体 Qβ,它于 1961 年在京都大学病毒研究所分离出来。
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引用次数: 0
Molecular mechanisms of self-incompatibility in Brassicaceae and Solanaceae 十字花科和茄科植物自相容性的分子机制
Pub Date : 2024-04-11 DOI: 10.2183/pjab.100.014
Kohji MURASE, Seiji TAKAYAMA, Akira ISOGAI

Self-incompatibility (SI) is a mechanism for preventing self-fertilization in flowering plants. SI is controlled by a single S-locus with multiple haplotypes (S-haplotypes). When the pistil and pollen share the same S-haplotype, the pollen is recognized as self and rejected by the pistil. This review introduces our research on Brassicaceae and Solanaceae SI systems to identify the S-determinants encoded at the S-locus and uncover the mechanisms of self/nonself-discrimination and pollen rejection. The recognition mechanisms of SI systems differ between these families. A self-recognition system is adopted by Brassicaceae, whereas a collaborative nonself-recognition system is used by Solanaceae. Work by our group and subsequent studies indicate that plants have evolved diverse SI systems.

自交不亲和(SI)是一种防止开花植物自交的机制。自交不亲和是由具有多种单倍型(S-单倍型)的单个 S-基因座控制的。当雌蕊和花粉具有相同的 S 单倍型时,花粉会被识别为自花受精而被雌蕊排斥。本综述介绍了我们对十字花科(Brassicaceae)和茄科(Solanaceae)SI系统的研究,以确定S基因座编码的S决定因子,并揭示自交/非自交识别和花粉排斥的机制。这两个科的 SI 系统的识别机制各不相同。十字花科(Brassicaceae)采用的是自我识别系统,而茄科(Solanaceae)采用的是协作非自我识别系统。我们研究小组的工作和随后的研究表明,植物进化出了多种多样的 SI 系统。
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引用次数: 0
Kawai-type multianvil ultrahigh-pressure technology 川井式多管超高压技术
Pub Date : 2024-02-03 DOI: 10.2183/pjab.100.013
Tetsuo IRIFUNE

Since the large-volume press with a double-stage multianvil system was created by the late Professor Naoto Kawai, this apparatus (Kawai-type multianvil apparatus or KMA) has been developed for higher-pressure generation, in situ X-ray and neutron observations, deformation experiments, measurements of physical properties, synthesis of high-pressure phases, etc., utilizing its large sample volume and capacity in stable and homogeneous high temperature generation compared to those of competitive diamond anvil cells. These advancements in KMA technology have been made primarily by Japanese scientists and engineers, which yielded a wealth of new experimental data on phase transitions, melting relations, and physical characteristics of minerals and rocks, leading to significant constraints on the structures, chemical compositions, and dynamics of the deep Earth. KMA technology has also been used for synthesis of novel functional materials such as nano-polycrystalline diamond and transparent nano-ceramics, opening a new research field of ultrahigh-pressure materials science.

自已故的川井直人教授创造出带有双级多砧系统的大容积压力机以来,这种设备(川井型多砧设备或 KMA)已被开发用于高压生成、原位 X 射线和中子观测、形变实验、物理性质测量、高压相合成等,与同类金刚石砧室相比,KMA 具有样品容积大、容量大的特点,能够稳定、均匀地进行高温生成。KMA 技术的这些进步主要是由日本科学家和工程师取得的,他们在矿物和岩石的相变、熔融关系和物理特性方面获得了大量新的实验数据,从而对地球深部的结构、化学成分和动力学产生了重要的制约作用。KMA 技术还被用于合成纳米多晶金刚石和透明纳米陶瓷等新型功能材料,开辟了超高压材料科学的新研究领域。
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引用次数: 0
Analysis of the spatial distribution of the landslides triggered by the 1923 Great Kanto Earthquake, Japan 1923 年日本关东大地震引发的山体滑坡的空间分布分析
Pub Date : 2023-12-29 DOI: 10.2183/pjab.100.009
Ryo ENDO, Junko IWAHASHI

The Great Kanto Earthquake that occurred in the southern part of Kanto district, Japan, on September 1, 1923, was reported to have triggered numerous landslides (over 89,080 slope failures over an area of 86.32 km2). This study investigated the relationship between the landslide occurrence caused by this earthquake and geomorphology, geology, soil, seismic ground motion, and coseismic deformation. We found that a higher landslide density was mainly related to a larger absolute curvature and a higher slope angle, as well as to several geological units (Neogene plutonic rock, accretionary prism, and metamorphic rocks). Moreover, we performed decision tree analyses, which showed that slope angle, geology, and coseismic deformation were correlated to landslide density in that order. However, no clear correlation was found between landslide density and seismic ground motion. These results suggest that landslide density was greater in areas of large slope angle or fragile geology in the area with strong shaking enough to trigger landslides.

据报道,1923 年 9 月 1 日发生在日本关东地区南部的关东大地震引发了大量滑坡(在 86.32 平方公里的面积上发生了 89 080 多处斜坡崩塌)。本研究调查了此次地震引发的滑坡与地貌、地质、土壤、地震地面运动和共震变形之间的关系。我们发现,较高的滑坡密度主要与较大的绝对曲率和较高的坡角以及几个地质单元(新元古代深成岩、增生棱岩和变质岩)有关。此外,我们还进行了决策树分析,结果表明坡角、地质和同震变形依次与滑坡密度相关。然而,在滑坡密度与地震地面运动之间没有发现明显的相关性。这些结果表明,在强震动足以引发滑坡的地区,坡角大或地质脆弱的地区滑坡密度更大。
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引用次数: 0
Recent progress in the chemistry of heavy aromatics 重芳烃化学的最新进展
Pub Date : 2023-12-11 DOI: 10.2183/pjab.99.027
Shiori FUJIMORI, Yoshiyuki MIZUHATA, Norihiro TOKITOH

The aromaticity and synthetic application of “heavy benzenes”, i.e., benzenes containing a heavier Group 14 element (Si, Ge, Sn, and Pb) in place of skeletal carbon, have been the targets of many theoretical and synthetic studies. Although the introduction of a sterically demanding substituent enabled us to synthesize and isolate heavy aromatic species as a stable compound by suppressing their high reactivity and tendency to polymerize, the existence of a protection group is an obstruction to the development of functional materials based on heavy aromatics. This review will delineate the most recent topics in the chemistry of heavy aromatics, i.e., the chemistry of “metallabenzenyl anions”, which are the heavier Group 14 element analogs of phenyl anions stabilized by taking advantage of charge repulsion instead of steric protection.

重苯",即含有较重的第 14 族元素(Si、Ge、Sn 和 Pb)以代替骨架碳的苯,其芳香性和合成应用一直是许多理论和合成研究的目标。虽然引入立体要求较高的取代基能够抑制重芳香族的高反应性和聚合倾向,从而合成并分离出稳定的重芳香族化合物,但保护基的存在阻碍了以重芳香族为基础的功能材料的发展。本综述将阐述重芳烃化学的最新课题,即 "金属苯阴离子 "的化学。"金属苯阴离子 "是较重的第 14 族元素苯基阴离子的类似物,利用电荷斥力而不是立体保护的优势使其稳定。
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引用次数: 0
Diffuse neutrino background from past core collapse supernovae 来自过去核心坍缩超新星的弥散中微子背景
Pub Date : 2023-12-11 DOI: 10.2183/pjab.99.026
Shin’ichiro ANDO, Nick EKANGER, Shunsaku HORIUCHI, Yusuke KOSHIO

Core collapse supernovae are among the most powerful explosions in the Universe, which emit thermal neutrinos that carry away most of the gravitational binding energy released. These neutrinos produce a diffuse supernova neutrino background (DSNB), which is one of the largest energy budgets among all radiation backgrounds. Detecting the DSNB is an important goal of modern high-energy astrophysics and particle physics, which provides valuable insights into core collapse modeling, neutrino physics, and cosmic supernova rate history. In this review, the key ingredients of DSNB calculation and what can be learned from future detections, including black hole formation and non-standard neutrino interactions are discussed. Moreover, an overview of the latest updates in neutrino experiments, which could lead to the detection of the DSNB in the next decade, is provided. With the promise of this breakthrough discovery on the horizon, the study of DSNB has great potential to further our understanding of the Universe.

核心坍缩超新星是宇宙中最强大的爆炸之一,它释放出的热中微子带走了所释放的大部分引力束缚能。这些中微子会产生弥散超新星中微子背景(DSNB),它是所有辐射背景中最大的能量预算之一。探测DSNB是现代高能天体物理学和粒子物理学的一个重要目标,它为内核坍缩建模、中微子物理学和宇宙超新星速率历史提供了宝贵的见解。在这篇综述中,将讨论 DSNB 计算的关键要素以及从未来探测中可以了解到的内容,包括黑洞形成和非标准中微子相互作用。此外,还概述了中微子实验的最新进展,这些进展可能导致在未来十年中探测到 DSNB。在这一突破性发现即将到来之际,DSNB 的研究对于进一步加深我们对宇宙的理解有着巨大的潜力。
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Proceedings of the Japan Academy, Series B
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