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A diagnostic biomarker of acid glycoprotein 1 for distinguishing malignant from benign pulmonary lesions. 用于区分肺部恶性和良性病变的酸性糖蛋白 1 诊断生物标志物。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-09-01 DOI: 10.1177/03936155231192672
Ying Chen, Yueyang Zhang, Ankang Huang, Yongsheng Gong, Weidong Wang, Jicheng Pan, Yanxia Jin

Background: The acid glycoprotein 1 (AGP1) is downregulated in lung cancer. However, the performance of AGP1 in distinguishing benign from malignant lung lesions is still unknown.

Methods: The expression of AGP1 in benign diseases and lung cancer samples was detected by Western blot. The receiver operating characteristic curves, bivariate correlation, and multivariate analysis was analyzed by SPSS software.

Results: AGP1 expression levels were significantly downregulated in lung cancer and correlated with carcinoembryonic antigen (CEA), CA199, and CA724 tumor biomarkers. The diagnostic performance of AGP1 for distinguishing malignant from benign pulmonary lesions was better than the other four clinical biomarkers including CEA, squamous cell carcinoma-associated antigen, neuron-specific enolase, and cytokeratin 19 fragment 21-1, with an area under the curve value of 0.713 at 88.8% sensitivity. Furthermore, the multivariate analysis indicated that the variates of thrombin time and potassium significantly affected the AGP1 levels in lung cancer.

Conclusions: Our study indicates that AGP1 expression is decreased in lung cancer compared to benign samples, which helps distinguish benign and malignant pulmonary lesions.

背景:酸性糖蛋白1(AGP1)在肺癌中呈下调趋势。然而,AGP1 在区分肺部良性和恶性病变方面的作用尚不清楚:方法:采用 Western 印迹法检测 AGP1 在良性疾病和肺癌样本中的表达。结果:AGP1在良性疾病和肺癌样本中的表达水平显著下降,而在恶性疾病中的表达水平则显著升高:结果:AGP1在肺癌中的表达水平明显下调,并与癌胚抗原(CEA)、CA199和CA724等肿瘤生物标志物相关。在区分肺部恶性和良性病变方面,AGP1的诊断性能优于其他四种临床生物标志物,包括癌胚抗原、鳞状细胞癌相关抗原、神经元特异性烯醇化酶和细胞角蛋白19片段21-1,其曲线下面积值为0.713,敏感性为88.8%。此外,多变量分析表明,凝血酶时间和血钾等变量对肺癌患者的 AGP1 水平有显著影响:我们的研究表明,与良性样本相比,AGP1在肺癌中的表达降低,这有助于区分肺部良性和恶性病变。
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引用次数: 0
Diagnostic value of programmed cell death-ligand 1 expression on circulating tumor cells in lung cancer: A systematic review and meta-analysis. 肺癌循环肿瘤细胞中程序性细胞死亡配体 1 表达的诊断价值:系统综述与荟萃分析
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-08-07 DOI: 10.1177/03936155231192674
Meng Cui, Zhiyong Wan, Jia Yang, Dan Liao, Yang Yang, Yin Xiang

The expression of programmed cell death-ligand 1 (PD-L1) on circulating tumor cells offers a noninvasive method for the detection of PD-L1 expression in lung cancer, and could serve as a potential surrogate for cancer tissue. However, discrepant results make it difficult to apply PD-L1 on circulating tumor cells to clinical practice. Therefore, we conducted a meta-analysis to investigate the diagnostic value of PD-L1 on circulating tumor cells in lung cancer. To identify the relationship between the expression of PD-L1 on circulating tumor cells and lung cancer, the PubMed, Web of Science, Embase, China National Knowledge Infrastructure, and Wanfang databases were searched from inception to March 2023. The pooled sensitivity, specificity, positive likelihood ratio, negative likelihood ratio, diagnostic odds ratio, and the corresponding 95% confidence intervals were calculated to assess the diagnostic performance of PD-L1. We also conducted subgroup and sensitivity analyses. A total of 11 studies including 472 lung cancer patients were included in our study. The overall performance in terms of pooled sensitivity and specificity was 0.72 (0.52-0.86) and 0.54 (0.25-0.81), respectively. The positive likelihood ratio, negative likelihood ratio, and area under the curve were 1.57 (0.87-2.84), 0.52 (0.30-0.90), and 0.70 (0.66-0.74), respectively. Deeks' funnel plot test indicated no publication bias. Our analysis demonstrated that positive PD-L1 expression on circulating tumor cells (CTCs) exhibited a moderate diagnostic value in lung cancer, and CTCs may serve as a feasible alternative tissue analysis for the detection of PD-L1 in lung cancer.

循环肿瘤细胞中程序性细胞死亡配体 1(PD-L1)的表达为检测肺癌中 PD-L1 的表达提供了一种无创方法,并可作为癌症组织的潜在替代物。然而,由于结果不一致,很难将循环肿瘤细胞上的 PD-L1 应用于临床实践。因此,我们进行了一项荟萃分析,研究肺癌循环肿瘤细胞中 PD-L1 的诊断价值。为了确定循环肿瘤细胞上 PD-L1 的表达与肺癌之间的关系,我们检索了 PubMed、Web of Science、Embase、中国国家知识基础设施和万方数据库(从开始到 2023 年 3 月)。为了评估 PD-L1 的诊断性能,我们计算了汇总的敏感性、特异性、阳性似然比、阴性似然比、诊断几率比和相应的 95% 置信区间。我们还进行了亚组和敏感性分析。我们的研究共纳入了 11 项研究,包括 472 名肺癌患者。汇总灵敏度和特异性的总体表现分别为 0.72(0.52-0.86)和 0.54(0.25-0.81)。阳性似然比、阴性似然比和曲线下面积分别为 1.57(0.87-2.84)、0.52(0.30-0.90)和 0.70(0.66-0.74)。Deeks漏斗图检验表明无发表偏倚。我们的分析表明,循环肿瘤细胞(CTCs)上的 PD-L1 阳性表达在肺癌中有一定的诊断价值,CTCs 可以作为检测肺癌 PD-L1 的一种可行的替代组织分析。
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引用次数: 0
Overexpression of complement C5a indicates poor survival and therapeutic response in metastatic renal cell carcinoma. 补体C5a的过表达表明转移性肾细胞癌的生存和治疗反应较差。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231161366
Changjun Yang, Faying Yang, Xiang Chen, Yunpeng Li, Xiaoyi Hu, Jianming Guo, Jiaxi Yao

Introduction: Complement C5a is an important component of the innate immune system. An increasing number of reports have revealed the relevance of C5a in tumor progression; however, its exact role in metastatic renal cell carcinoma (mRCC) remains unknown.

Methods: We evaluated C5a expression in tumor tissue microarrays of 231 mRCC patients and analyzed the relationship between C5a levels and clinical outcomes, and the expression of epithelial-mesenchymal transition (EMT)-related proteins, programmed cell death protein 1 (PD-1), and programmed cell death-ligand 1 (PD-L1). In-vitro functional experiments using exogenous C5a stimulation and C5a silencing in renal cell carcinoma cells were used to validate the tissue findings.

Results: High C5a expression was associated with poor therapeutic responses, poor overall and progression-free survival, and high expression of EMT-related proteins and PD-1/PD-L1 in mRCC patients. Exogenous C5a promoted proliferation, migration, and invasion of renal cell carcinoma cells, and induced the expression of EMT-related proteins and PD-1/PD-L1. Conversely, C5a silencing inhibited migration and invasion of renal cell carcinoma cells and decreased the expression of EMT-related proteins and PD-1/PD-L1.

Conclusions: Our findings indicate that elevated C5a expression is associated with poor outcomes in patients with mRCC, and this effect may be partly attributed to the ability of C5a to promote EMT and PD-1/PD-L1 expression. C5a may be a potential novel target for the treatment of mRCC.

补体C5a是先天免疫系统的重要组成部分。越来越多的报道揭示了C5a与肿瘤进展的相关性;然而,其在转移性肾细胞癌(mRCC)中的确切作用尚不清楚。方法:我们评估了231例mRCC患者肿瘤组织微阵列中C5a的表达,分析了C5a水平与临床结局的关系,以及上皮-间质转化(EMT)相关蛋白、程序性细胞死亡蛋白1 (PD-1)和程序性细胞死亡配体1 (PD-L1)的表达。采用外源性C5a刺激和C5a沉默对肾细胞癌细胞的体外功能实验来验证组织发现。结果:高C5a表达与mRCC患者治疗反应差、总生存期和无进展生存期差以及emt相关蛋白和PD-1/PD-L1的高表达相关。外源性C5a促进肾细胞癌细胞的增殖、迁移和侵袭,诱导emt相关蛋白和PD-1/PD-L1的表达。相反,C5a沉默抑制肾细胞癌细胞的迁移和侵袭,降低emt相关蛋白和PD-1/PD-L1的表达。结论:我们的研究结果表明,C5a表达升高与mRCC患者预后不良相关,这种影响可能部分归因于C5a促进EMT和PD-1/PD-L1表达的能力。C5a可能是治疗mRCC的一个潜在的新靶点。
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引用次数: 0
Pleural CEA, CA-15-3, CYFRA 21-1, CA-19-9, CA-125 discriminating malignant from benign pleural effusions: Diagnostic cancer biomarkers. 胸膜CEA、CA-15-3、CYFRA 21-1、CA-19-9、CA-125鉴别良性和恶性胸腔积液:诊断癌症的生物标志物。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231158661
Farzaneh Fazli Khalaf, Mehrnaz Asadi Gharabaghi, Maryam Balibegloo, Hamidreza Davari, Samaneh Afshar, Behnaz Jahanbin

Introduction: There is a need for a rapid, accurate, less-invasive approach to distinguishing malignant from benign pleural effusions. We investigated the diagnostic value of five pleural tumor markers in exudative pleural effusions.

Methods: By immunochemiluminescence assay, we measured pleural concentrations of tumor markers. We used the receiver operating characteristic curve analysis to assess their diagnostic values.

Results: A total of 281 patients were enrolled. All tumor markers were significantly higher in malignant pleural effusions than benign ones. The area under the curve of carcinoembryonic antigen (CEA), carbohydrate antigen (CA) 15-3, cytokeratin fragment 19 (CYFRA) 21-1, CA-19-9, and CA-125 were 0.81, 0.78, 0.75, 0.65, and 0.65, respectively. Combined markers of CEA + CA-15-3 and CEA + CA-15-3 + CYFRA 21-1 had a sensitivity of 87% and 94%, and specificity of 75% and 58%, respectively. We designed a diagnostic algorithm by combining pleural cytology with pleural tumor marker assay. CEA + CYFRA 21-1 + CA-19-9 + CA-15-3 was the best tumor markers panel detecting 96% of cytologically negative malignant pleural effusions, with a negative predictive value of 98%.

Conclusions: Although cytology is specific enough, it has less sensitivity in identifying malignant pleural fluids. As a result, the main gap is detecting malignant pleural effusions with negative cytology. CEA was the best single marker, followed by CA-15-3 and CYFRA 21-1. Through both cytology and suggested panels of tumor markers, malignant and benign pleural effusions could be truly diagnosed with an accuracy of about 98% without the need for more invasive procedures, except for the cohort with negative cytology and a positive tumor markers panel, which require more investigations.

简介:需要一种快速、准确、微创的方法来区分良性和恶性胸腔积液。探讨五种胸膜肿瘤标志物在胸腔渗出性积液中的诊断价值。方法:采用免疫化学发光法测定胸膜肿瘤标志物浓度。我们使用受试者工作特征曲线分析来评估其诊断价值。结果:共纳入281例患者。恶性胸腔积液的各项肿瘤指标均高于良性胸腔积液。癌胚抗原(CEA)、糖类抗原(CA) 15-3、细胞角蛋白片段19 (CYFRA) 21-1、CA-19-9、CA-125的曲线下面积分别为0.81、0.78、0.75、0.65、0.65。CEA + CA-15-3和CEA + CA-15-3 + CYFRA 21-1联合标记的敏感性分别为87%和94%,特异性分别为75%和58%。我们设计了一种结合胸膜细胞学和胸膜肿瘤标志物测定的诊断算法。CEA + CYFRA 21-1 + CA-19-9 + CA-15-3是检测96%细胞学阴性恶性胸腔积液的最佳肿瘤标志物,阴性预测值为98%。结论:虽然细胞学检查具有足够的特异性,但在鉴别恶性胸腔积液时敏感性较低。因此,主要的空白是发现阴性细胞学的恶性胸腔积液。CEA为最佳单标记,CA-15-3次之,CYFRA 21-1次之。除了细胞学阴性和肿瘤标志物阳性的队列需要更多的检查外,通过细胞学和建议的肿瘤标志物组,可以真正诊断出恶性和良性胸腔积液,准确率约为98%,而不需要更多的侵入性手术。
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引用次数: 0
Analysis of systemic inflammatory and coagulation biomarkers in advanced cervical cancer: Prognostic and predictive significance. 晚期宫颈癌的全身炎症和凝血生物标志物分析:预后和预测意义。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231163599
Ningfeng Li, Yan Zhang, Wenjie Qu, Chao Zhang, Zhaoxia Ding, Linlin Wang, Baoxia Cui

Objective: Peripheral systemic inflammatory, nutritional, and coagulation biomarkers have prognostic and predictive value in various malignancies. We evaluated the prognostic and predictive roles of systemic inflammatory, nutritional, and coagulation biomarkers in the circulating blood of patients with advanced cervical cancer.

Methods: A retrospective study of 795 patients with cervical cancer who received concurrent chemoradiation therapy was performed. Overall survival was evaluated by the Kaplan-Meier estimator. Univariate and multivariate Cox regression models were used to determine prognostic factors associated with overall survival.

Results: The median follow-up time was 76 months. In the univariate analysis, overall survival showed positive prognostic value in patients with a platelet-to-lymphocyte ratio (PLR) <164.29 (P = 0.010), and a plasma fibrinogen (FIB) level <4 g/L(P = 0.012). In the multivariate analysis, the PLR (P = 0.036), and FIB level (P = 0.047) maintained their significance for overall survival. Therefore, the PLR and FIB levels are independent prognostic factors in patients with advanced cervical cancer.

Conclusions: Systemic inflammatory and coagulation biomarkers could help to understand survival differences in the clinical treatment of advanced cervical cancer. The PLR and FIB levels are independent prognostic factors of poor survival in patients with advanced cervical cancer.

目的:外周血系统炎症、营养和凝血生物标志物在各种恶性肿瘤中具有预后和预测价值。我们评估了晚期宫颈癌患者循环血液中系统性炎症、营养和凝血生物标志物的预后和预测作用。方法:对795例同步放化疗的宫颈癌患者进行回顾性研究。用Kaplan-Meier估计器评估总生存率。使用单因素和多因素Cox回归模型来确定与总生存相关的预后因素。结果:中位随访时间76个月。在单因素分析中,血小板与淋巴细胞比值(PLR) P = 0.010和血浆纤维蛋白原(FIB)水平P = 0.012的患者的总生存率显示出积极的预后价值。在多因素分析中,PLR (P = 0.036)和FIB水平(P = 0.047)对总生存率保持显著性。因此,PLR和FIB水平是影响晚期宫颈癌患者预后的独立因素。结论:全身炎症和凝血生物标志物有助于了解晚期宫颈癌临床治疗中的生存差异。PLR和FIB水平是晚期宫颈癌患者生存不良的独立预后因素。
{"title":"Analysis of systemic inflammatory and coagulation biomarkers in advanced cervical cancer: Prognostic and predictive significance.","authors":"Ningfeng Li,&nbsp;Yan Zhang,&nbsp;Wenjie Qu,&nbsp;Chao Zhang,&nbsp;Zhaoxia Ding,&nbsp;Linlin Wang,&nbsp;Baoxia Cui","doi":"10.1177/03936155231163599","DOIUrl":"https://doi.org/10.1177/03936155231163599","url":null,"abstract":"<p><strong>Objective: </strong>Peripheral systemic inflammatory, nutritional, and coagulation biomarkers have prognostic and predictive value in various malignancies. We evaluated the prognostic and predictive roles of systemic inflammatory, nutritional, and coagulation biomarkers in the circulating blood of patients with advanced cervical cancer.</p><p><strong>Methods: </strong>A retrospective study of 795 patients with cervical cancer who received concurrent chemoradiation therapy was performed. Overall survival was evaluated by the Kaplan-Meier estimator. Univariate and multivariate Cox regression models were used to determine prognostic factors associated with overall survival.</p><p><strong>Results: </strong>The median follow-up time was 76 months. In the univariate analysis, overall survival showed positive prognostic value in patients with a platelet-to-lymphocyte ratio (PLR) <164.29 (<i>P</i> = 0.010), and a plasma fibrinogen (FIB) level <4 g/L(<i>P</i> = 0.012). In the multivariate analysis, the PLR (<i>P</i> = 0.036), and FIB level (<i>P</i> = 0.047) maintained their significance for overall survival. Therefore, the PLR and FIB levels are independent prognostic factors in patients with advanced cervical cancer.</p><p><strong>Conclusions: </strong>Systemic inflammatory and coagulation biomarkers could help to understand survival differences in the clinical treatment of advanced cervical cancer. The PLR and FIB levels are independent prognostic factors of poor survival in patients with advanced cervical cancer.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":"38 2","pages":"133-138"},"PeriodicalIF":2.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9724590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
MMR markers correlate with clinical outcome in patients with esophageal squamous cell carcinoma. MMR标志物与食管鳞状细胞癌患者的临床预后相关。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231165068
Takuro Yamauchi, Fumiyoshi Fujishima, Junichi Tsunokake, Atsushi Kunimitsu, Ryujiro Akaishi, Yohei Ozawa, Toshiaki Fukutomi, Hiroshi Okamoto, Chiaki Sato, Yusuke Taniyama, Takashi Kamei, Ryo Ichinohasama, Hironobu Sasano

Background: The DNA mismatch repair system is one of the defense mechanisms in the body, and the inactivation of mismatch repair plays a pivotal role in secondary carcinogenesis and progression. However, the significance of mismatch repair in esophageal squamous cell carcinoma (ESCC) has not been established. In this study, we explored the diagnostic and prognostic significance of mismatch repair markers, mutL homologue 1 (MLH1), post-meiotic segregation increased 2 (PMS2), mutS homologue 2 (MSH2), and mutS homologue 6 (MSH6), in patients with ESCC.

Methods: We used a notation based on the proportion of immunoreactivity/expression for immunohistochemistry (PRIME notation), which allows the comparison of mismatch repair expression by assigning a score to PRIME notation. MLH1, PMS2, MSH2, and MSH6 were examined immunohistochemically in 189 surgically resected ESCC specimens.

Results: A total of 100/189 patients with ESCC (53%) received preoperative chemotherapy. The rates of ESCC cases with decreased mismatch repair status were 13.2%, 15.3%, 24.8%, and 12.6% for MLH1, PMS2, MSH2, and MSH6, respectively. The decreased status of individual mismatch repair markers was significantly correlated with worse prognosis in patients with ESCC. Additionally, MSH2, MSH6, and PMS2 were significantly associated with response to preoperative chemotherapy. Multivariate analysis revealed that MLH1, PMS2, and MSH2 are independent prognostic factors.

Conclusion: Our results suggest that mismatch repair is a prognostic biomarker for ESCC and could contribute to the selection of appropriate adjuvant therapy for patients with ESCC.

背景:DNA错配修复系统是机体的防御机制之一,错配修复失活在继发性癌的发生和发展中起着关键作用。然而,错配修复在食管鳞状细胞癌(ESCC)中的意义尚未确定。在这项研究中,我们探讨了错配修复标记,mutL同源物1 (MLH1),减数分裂后分离增加2 (PMS2), mutS同源物2 (MSH2)和mutS同源物6 (MSH6)在ESCC患者中的诊断和预后意义。方法:我们使用基于免疫组织化学免疫反应性/表达比例的记谱法(PRIME记谱法),通过对PRIME记谱法评分,可以比较错配修复表达。对189例手术切除的ESCC标本进行了MLH1、PMS2、MSH2和MSH6免疫组化检测。结果:共有100/189例ESCC患者(53%)接受了术前化疗。MLH1、PMS2、MSH2和MSH6错配修复状态降低的ESCC病例比例分别为13.2%、15.3%、24.8%和12.6%。个体错配修复标记的降低与ESCC患者的预后不良显著相关。此外,MSH2、MSH6和PMS2与术前化疗反应显著相关。多因素分析显示,MLH1、PMS2和MSH2是独立的预后因素。结论:我们的研究结果表明,错配修复是ESCC的预后生物标志物,可以帮助ESCC患者选择合适的辅助治疗。
{"title":"MMR markers correlate with clinical outcome in patients with esophageal squamous cell carcinoma.","authors":"Takuro Yamauchi,&nbsp;Fumiyoshi Fujishima,&nbsp;Junichi Tsunokake,&nbsp;Atsushi Kunimitsu,&nbsp;Ryujiro Akaishi,&nbsp;Yohei Ozawa,&nbsp;Toshiaki Fukutomi,&nbsp;Hiroshi Okamoto,&nbsp;Chiaki Sato,&nbsp;Yusuke Taniyama,&nbsp;Takashi Kamei,&nbsp;Ryo Ichinohasama,&nbsp;Hironobu Sasano","doi":"10.1177/03936155231165068","DOIUrl":"https://doi.org/10.1177/03936155231165068","url":null,"abstract":"<p><strong>Background: </strong>The DNA mismatch repair system is one of the defense mechanisms in the body, and the inactivation of mismatch repair plays a pivotal role in secondary carcinogenesis and progression. However, the significance of mismatch repair in esophageal squamous cell carcinoma (ESCC) has not been established. In this study, we explored the diagnostic and prognostic significance of mismatch repair markers, mutL homologue 1 (MLH1), post-meiotic segregation increased 2 (PMS2), mutS homologue 2 (MSH2), and mutS homologue 6 (MSH6), in patients with ESCC.</p><p><strong>Methods: </strong>We used a notation based on the proportion of immunoreactivity/expression for immunohistochemistry (PRIME notation), which allows the comparison of mismatch repair expression by assigning a score to PRIME notation. MLH1, PMS2, MSH2, and MSH6 were examined immunohistochemically in 189 surgically resected ESCC specimens.</p><p><strong>Results: </strong>A total of 100/189 patients with ESCC (53%) received preoperative chemotherapy. The rates of ESCC cases with decreased mismatch repair status were 13.2%, 15.3%, 24.8%, and 12.6% for MLH1, PMS2, MSH2, and MSH6, respectively. The decreased status of individual mismatch repair markers was significantly correlated with worse prognosis in patients with ESCC. Additionally, MSH2, MSH6, and PMS2 were significantly associated with response to preoperative chemotherapy. Multivariate analysis revealed that MLH1, PMS2, and MSH2 are independent prognostic factors.</p><p><strong>Conclusion: </strong>Our results suggest that mismatch repair is a prognostic biomarker for ESCC and could contribute to the selection of appropriate adjuvant therapy for patients with ESCC.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":"38 2","pages":"105-113"},"PeriodicalIF":2.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10044476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Alterations of commensal microbiota are associated with pancreatic cancer. 共生微生物群的改变与胰腺癌有关。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 Epub Date: 2023-04-05 DOI: 10.1177/03936155231166721
Tian Chen, Xuejiao Li, Gaoming Li, Yun Liu, Xiaochun Huang, Wei Ma, Chao Qian, Jie Guo, Shuo Wang, Qin Qin, Shanrong Liu

Background: Dysbiosis commonly occurs in pancreatic cancer, but its specific characteristics and interactions with pancreatic cancer remain obscure.

Materials and methods: The 16S rRNA sequencing method was used to analyze multisite (oral and gut) microbiota characteristics of pancreatic cancer, chronic pancreatitis, and healthy controls. Differential analysis was used to identify the pancreatic cancer-associated genera and pathways. A random forest algorithm was adopted to establish the diagnostic models for pancreatic cancer.

Results: The chronic pancreatitis group exhibited the lowest microbial diversity, while no significant difference was found between the pancreatic cancer group and healthy controls group. Diagnostic models based on the characteristics of the oral (area under the curve (AUC) 0.916, 95% confidence interval (CI) 0.832-1) or gut (AUC 0.856; 95% CI 0.74, 0.972) microbiota effectively discriminate the pancreatic cancer samples in this study, suggesting saliva as a superior sample type in terms of detection efficiency and clinical compliance. Oral pathogenic genera (Granulicatella, Peptostreptococcus, Alloprevotella, Veillonella, etc.) and gut opportunistic genera (Prevotella, Bifidobacterium, Escherichia/Shigella, Peptostreptococcus, Actinomyces, etc.), were significantly enriched in pancreatic cancer. The 16S function prediction analysis revealed that inflammation, immune suppression, and barrier damage pathways were involved in the course of pancreatic cancer.

Conclusion: This study comprehensively described the microbiota characteristics of pancreatic cancer and suggested potential microbial markers as non-invasive tools for pancreatic cancer diagnosis.

背景:胰腺癌患者通常会出现菌群失调,但其具体特征及其与胰腺癌的相互作用仍不明确:采用 16S rRNA 测序方法分析胰腺癌、慢性胰腺炎和健康对照组的多位点(口腔和肠道)微生物群特征。差异分析用于确定胰腺癌相关菌属和通路。采用随机森林算法建立了胰腺癌诊断模型:结果:慢性胰腺炎组的微生物多样性最低,而胰腺癌组与健康对照组之间无明显差异。在这项研究中,基于口腔(曲线下面积(AUC)0.916,95% 置信区间(CI)0.832-1)或肠道(AUC 0.856;95% CI 0.74,0.972)微生物群特征的诊断模型能有效区分胰腺癌样本,这表明唾液在检测效率和临床依从性方面是一种更优越的样本类型。口腔致病菌属(粒细胞菌属、肽链球菌属、全链球菌属、维龙菌属等)和肠道机会性菌属(普雷沃菌属、双歧杆菌属、埃希菌属/志贺菌属、肽链球菌属、放线菌属等)在胰腺癌中显著富集。16S 功能预测分析表明,炎症、免疫抑制和屏障损伤途径参与了胰腺癌的发病过程:这项研究全面描述了胰腺癌微生物群的特征,并提出了潜在的微生物标记物作为胰腺癌诊断的非侵入性工具。
{"title":"Alterations of commensal microbiota are associated with pancreatic cancer.","authors":"Tian Chen, Xuejiao Li, Gaoming Li, Yun Liu, Xiaochun Huang, Wei Ma, Chao Qian, Jie Guo, Shuo Wang, Qin Qin, Shanrong Liu","doi":"10.1177/03936155231166721","DOIUrl":"10.1177/03936155231166721","url":null,"abstract":"<p><strong>Background: </strong>Dysbiosis commonly occurs in pancreatic cancer, but its specific characteristics and interactions with pancreatic cancer remain obscure.</p><p><strong>Materials and methods: </strong>The 16S rRNA sequencing method was used to analyze multisite (oral and gut) microbiota characteristics of pancreatic cancer, chronic pancreatitis, and healthy controls. Differential analysis was used to identify the pancreatic cancer-associated genera and pathways. A random forest algorithm was adopted to establish the diagnostic models for pancreatic cancer.</p><p><strong>Results: </strong>The chronic pancreatitis group exhibited the lowest microbial diversity, while no significant difference was found between the pancreatic cancer group and healthy controls group. Diagnostic models based on the characteristics of the oral (area under the curve (AUC) 0.916, 95% confidence interval (CI) 0.832-1) or gut (AUC 0.856; 95% CI 0.74, 0.972) microbiota effectively discriminate the pancreatic cancer samples in this study, suggesting saliva as a superior sample type in terms of detection efficiency and clinical compliance. Oral pathogenic genera (<i>Granulicatella</i>, <i>Peptostreptococcus</i>, <i>Alloprevotella</i>, <i>Veillonella</i>, etc.) and gut opportunistic genera (<i>Prevotella</i>, <i>Bifidobacterium</i>, <i>Escherichia/Shigella</i>, <i>Peptostreptococcus</i>, <i>Actinomyces</i>, etc.), were significantly enriched in pancreatic cancer. The 16S function prediction analysis revealed that inflammation, immune suppression, and barrier damage pathways were involved in the course of pancreatic cancer.</p><p><strong>Conclusion: </strong>This study comprehensively described the microbiota characteristics of pancreatic cancer and suggested potential microbial markers as non-invasive tools for pancreatic cancer diagnosis.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":"38 2","pages":"89-98"},"PeriodicalIF":2.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9674648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Diagnosis of malignant pleural effusion with combinations of multiple tumor markers: A comparison study of five machine learning models. 多种肿瘤标志物联合诊断恶性胸腔积液:五种机器学习模型的比较研究。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231158125
Yixi Zhang, Jingyuan Wang, Baosheng Liang, Hanyu Wu, Yangyu Chen

Background: To evaluate the diagnostic value of combinations of tumor markers carcinoembryonic antigen (CEA), carbohydrate antigen (CA) 125, CA153, and CA19-9 in identifying malignant pleural effusion (MPE) from non-malignant pleural effusion (non-MPE) using machine learning, and compare the performance of popular machine learning methods.

Methods: A total of 319 samples were collected from patients with pleural effusion in Beijing and Wuhan, China, from January 2018 to June 2020. Five machine learning methods including Logistic regression, extreme gradient boosting (XGBoost), Bayesian additive regression tree, random forest, and support vector machine were applied to evaluate the diagnostic performance. Sensitivity, specificity, Youden's index, and the area under the receiver operating characteristic curve (AUC) were used to evaluate the performance of different diagnostic models.

Results: For diagnostic models with a single tumor marker, the model using CEA, constructed by XGBoost, performed best (AUC = 0.895, sensitivity = 0.80), and the model with CA153, also by XGBoost, showed the largest specificity 0.98. Among all combinations of tumor markers, the combination of CEA and CA153 achieved the best performance (AUC = 0.921, sensitivity = 0.85) in identifying MPE under the diagnostic model constructed by XGBoost.

Conclusions: Diagnostic models for MPE with a combination of multiple tumor markers outperformed the models with a single tumor marker, particularly in sensitivity. Using machine learning methods, especially XGBoost, could comprehensively improve the diagnostic accuracy of MPE.

背景:评价肿瘤标志物癌胚抗原(CEA)、碳水化合物抗原(CA) 125、CA153和CA19-9联合应用机器学习识别恶性胸腔积液(MPE)和非恶性胸腔积液(非MPE)的诊断价值,并比较常用机器学习方法的性能。方法:2018年1月至2020年6月,在中国北京和武汉收集胸膜积液患者样本319例。采用Logistic回归、极限梯度增强(XGBoost)、贝叶斯加性回归树、随机森林和支持向量机等5种机器学习方法对诊断性能进行评价。采用敏感性、特异性、约登指数和受试者工作特征曲线下面积(AUC)评价不同诊断模型的性能。结果:对于单一肿瘤标志物的诊断模型,使用XGBoost构建的CEA模型效果最好(AUC = 0.895,灵敏度= 0.80),使用XGBoost构建的CA153模型的特异性最大,为0.98。在所有肿瘤标志物组合中,CEA与CA153组合在XGBoost构建的诊断模型下识别MPE的效果最佳(AUC = 0.921,灵敏度= 0.85)。结论:结合多种肿瘤标志物的MPE诊断模型优于单一肿瘤标志物的诊断模型,特别是在敏感性方面。利用机器学习方法,尤其是XGBoost,可以全面提高MPE的诊断准确率。
{"title":"Diagnosis of malignant pleural effusion with combinations of multiple tumor markers: A comparison study of five machine learning models.","authors":"Yixi Zhang,&nbsp;Jingyuan Wang,&nbsp;Baosheng Liang,&nbsp;Hanyu Wu,&nbsp;Yangyu Chen","doi":"10.1177/03936155231158125","DOIUrl":"https://doi.org/10.1177/03936155231158125","url":null,"abstract":"<p><strong>Background: </strong>To evaluate the diagnostic value of combinations of tumor markers carcinoembryonic antigen (CEA), carbohydrate antigen (CA) 125, CA153, and CA19-9 in identifying malignant pleural effusion (MPE) from non-malignant pleural effusion (non-MPE) using machine learning, and compare the performance of popular machine learning methods.</p><p><strong>Methods: </strong>A total of 319 samples were collected from patients with pleural effusion in Beijing and Wuhan, China, from January 2018 to June 2020. Five machine learning methods including Logistic regression, extreme gradient boosting (XGBoost), Bayesian additive regression tree, random forest, and support vector machine were applied to evaluate the diagnostic performance. Sensitivity, specificity, Youden's index, and the area under the receiver operating characteristic curve (AUC) were used to evaluate the performance of different diagnostic models.</p><p><strong>Results: </strong>For diagnostic models with a single tumor marker, the model using CEA, constructed by XGBoost, performed best (AUC = 0.895, sensitivity = 0.80), and the model with CA153, also by XGBoost, showed the largest specificity 0.98. Among all combinations of tumor markers, the combination of CEA and CA153 achieved the best performance (AUC = 0.921, sensitivity = 0.85) in identifying MPE under the diagnostic model constructed by XGBoost.</p><p><strong>Conclusions: </strong>Diagnostic models for MPE with a combination of multiple tumor markers outperformed the models with a single tumor marker, particularly in sensitivity. Using machine learning methods, especially XGBoost, could comprehensively improve the diagnostic accuracy of MPE.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":"38 2","pages":"139-146"},"PeriodicalIF":2.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9670205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Effect of secretory DKK3 on circulating CD56bright natural killer cells in patients with liver cancer. 分泌DKK3对肝癌患者循环CD56bright自然杀伤细胞的影响
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231169796
Da-Hua Liu, Gui-Min Wen, Chang-Liang Song, Pu Xia

Background: Liver cancer seriously threatens human health. Natural killer (NK) cells are an important part of the innate immune system and have strong anti-tumor ability. Immunotherapy based on NK cells has become a hot topic in the treatment of liver cancer.

Methods: In this study, we checked the serum DKK3 (sDKK3) and circulating CD56bright NK cells using ELISA and flow cytometry, respectively, in the blood of liver cancer patients. The effect on recombinant human DKK3 (rhDKK3) on CD56bright NK cells was analyzed in vitro.

Results: We found low levels of sDKK3 in liver cancer patients and a negative correlation between sDKK3 and circulating CD56bright NK cells. In addition, we found that DKK3 induced the differentiation and improved the cytotoxicity of CD56bright NK cells for the first time. It could be used as an agonist for NK cell-based immunotherapy.

Conclusions: Improving the clinical efficacy of NK cells through DKK3 will become a new strategy for cancer immunotherapy.

研究背景:肝癌严重威胁人类健康。自然杀伤细胞(NK)是先天免疫系统的重要组成部分,具有很强的抗肿瘤能力。基于NK细胞的免疫治疗已成为肝癌治疗的热点。方法:采用ELISA和流式细胞术分别检测肝癌患者血液中DKK3 (sDKK3)和循环CD56bright NK细胞。体外分析重组人DKK3 (rhDKK3)对CD56bright NK细胞的影响。结果:我们在肝癌患者中发现了低水平的sDKK3,并且sDKK3与循环CD56bright NK细胞呈负相关。此外,我们首次发现DKK3诱导CD56bright NK细胞分化并提高细胞毒性。它可以作为NK细胞免疫治疗的激动剂。结论:通过DKK3提高NK细胞的临床疗效将成为肿瘤免疫治疗的新策略。
{"title":"Effect of secretory DKK3 on circulating CD56<sup>bright</sup> natural killer cells in patients with liver cancer.","authors":"Da-Hua Liu,&nbsp;Gui-Min Wen,&nbsp;Chang-Liang Song,&nbsp;Pu Xia","doi":"10.1177/03936155231169796","DOIUrl":"https://doi.org/10.1177/03936155231169796","url":null,"abstract":"<p><strong>Background: </strong>Liver cancer seriously threatens human health. Natural killer (NK) cells are an important part of the innate immune system and have strong anti-tumor ability. Immunotherapy based on NK cells has become a hot topic in the treatment of liver cancer.</p><p><strong>Methods: </strong>In this study, we checked the serum DKK3 (sDKK3) and circulating CD56<sup>bright</sup> NK cells using ELISA and flow cytometry, respectively, in the blood of liver cancer patients. The effect on recombinant human DKK3 (rhDKK3) on CD56<sup>bright</sup> NK cells was analyzed in vitro.</p><p><strong>Results: </strong>We found low levels of sDKK3 in liver cancer patients and a negative correlation between sDKK3 and circulating CD56<sup>bright</sup> NK cells. In addition, we found that DKK3 induced the differentiation and improved the cytotoxicity of CD56<sup>bright</sup> NK cells for the first time. It could be used as an agonist for NK cell-based immunotherapy.</p><p><strong>Conclusions: </strong>Improving the clinical efficacy of NK cells through DKK3 will become a new strategy for cancer immunotherapy.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":"38 2","pages":"99-104"},"PeriodicalIF":2.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9724639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gleason Score-related MT1L as biomarker for prognosis in prostate adenocarcinoma and contribute to tumor progression in vitro. Gleason评分相关的MT1L作为前列腺癌预后的生物标志物,在体外促进肿瘤进展。
IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-06-01 DOI: 10.1177/03936155231156458
Lei Liu, Yaping Li, Shiying Tang, Bin Yang, Qiming Zhang, Ruotao Xiao, Xiaofei Hou, Cheng Liu, Lulin Ma

Background: The Gleason Score is well correlated with biological behavior and prognosis in prostate adenocarcinoma (PRAD). This study was derived to determine the clinical significance and function of Gleason-Score-related genes in PRAD.

Methods: RNA-sequencing profiles and clinical data were extracted from the The Cancer Genome Atlas PRAD database. The Gleason-Score-related genes were screened out by the Jonckheere-Terpstra rank-based test. The "limma" R package was performed for differentially expressed genes. Next, a Kaplan-Meier survival analysis was performed. Correlation MT1L expression levels with tumor stage, non-tumor tissue stage, radiation therapy, and residual tumor were analyzed. Further, MT1L expression was detected in PRAD cell lines by reverse transcription-quantitative polymerase chain reaction assay. Overexpression of MT1L was constructed and used for cell count kit-8, flow cytometric assay, transwell assay, and wound-healing assay.

Results: Survival analysis showed 15 Gleason-Score-related genes as prognostic biomarkers in PRAD. The high-frequency deletion of MT1L was verified in PRAD. Furthermore, MT1L expression was decreased in PRAD cell lines than RWPE-1 cells, and overexpression of MT1L repressed cell proliferation and migration, and induced apoptosis in PC-3 cells.

Conclusion: Gleason-Score-related MT1L may serve as a biomarker of poor prognostic biomarker in PRAD. In addition, MT1L plays a tumor suppressor in PRAD progression, which is beneficial for PRAD diagnosis and treatment research.

背景:Gleason评分与前列腺腺癌(PRAD)的生物学行为和预后有很好的相关性。本研究旨在确定格里森评分相关基因在PRAD中的临床意义和功能。方法:从the Cancer Genome Atlas PRAD数据库中提取rna测序图谱和临床数据。gleason - score相关基因通过Jonckheere-Terpstra秩基础测试筛选出来。对差异表达基因进行“limma”R包装。接下来,进行Kaplan-Meier生存分析。分析MT1L表达水平与肿瘤分期、非肿瘤组织分期、放疗及残余肿瘤的相关性。此外,通过逆转录-定量聚合酶链反应法检测了MT1L在PRAD细胞系中的表达。构建过表达的MT1L,并将其用于细胞计数试剂盒-8、流式细胞术实验、transwell实验和伤口愈合实验。结果:生存分析显示15个gleason评分相关基因可作为PRAD的预后生物标志物。在PRAD中证实了MT1L的高频缺失。与RWPE-1细胞相比,PRAD细胞中MT1L的表达降低,MT1L的过表达抑制了PC-3细胞的增殖和迁移,诱导了细胞凋亡。结论:与gleason评分相关的MT1L可作为PRAD不良预后的生物标志物。此外,MT1L在PRAD进展中发挥抑瘤作用,有利于PRAD的诊断和治疗研究。
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International Journal of Biological Markers
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